Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3188 and GFF3189 are separated by 68 nucleotides GFF3189 and GFF3190 are separated by 138 nucleotides
GFF3188 - hypothetical protein, at 69,384 to 70,496
GFF3188
GFF3189 - putative type II restriction endonuclease, at 70,565 to 71,482
GFF3189
GFF3190 - Chromosome partition protein smc, at 71,621 to 74,065
GFF3190
Position (kb) 70
71
72 Strain fitness (log2 ratio) -2
-1
0
1 at 69.570 kb on + strand, within GFF3188 at 69.621 kb on + strand, within GFF3188 at 69.622 kb on - strand, within GFF3188 at 69.624 kb on + strand, within GFF3188 at 69.625 kb on - strand, within GFF3188 at 69.625 kb on - strand, within GFF3188 at 69.852 kb on + strand, within GFF3188 at 69.853 kb on - strand, within GFF3188 at 69.853 kb on - strand, within GFF3188 at 69.953 kb on + strand, within GFF3188 at 69.953 kb on + strand, within GFF3188 at 69.953 kb on + strand, within GFF3188 at 69.954 kb on - strand, within GFF3188 at 69.954 kb on - strand, within GFF3188 at 69.996 kb on + strand, within GFF3188 at 70.242 kb on + strand, within GFF3188 at 70.254 kb on + strand, within GFF3188 at 70.254 kb on + strand, within GFF3188 at 70.254 kb on + strand, within GFF3188 at 70.254 kb on + strand, within GFF3188 at 70.254 kb on + strand, within GFF3188 at 70.255 kb on - strand, within GFF3188 at 70.255 kb on - strand, within GFF3188 at 70.255 kb on - strand, within GFF3188 at 70.255 kb on - strand, within GFF3188 at 70.260 kb on + strand, within GFF3188 at 70.261 kb on - strand, within GFF3188 at 70.326 kb on + strand, within GFF3188 at 70.330 kb on - strand, within GFF3188 at 70.415 kb on + strand at 70.514 kb on + strand at 70.514 kb on + strand at 70.515 kb on - strand at 70.626 kb on + strand at 70.811 kb on + strand, within GFF3189 at 70.811 kb on + strand, within GFF3189 at 70.812 kb on - strand, within GFF3189 at 71.106 kb on + strand, within GFF3189 at 71.376 kb on + strand, within GFF3189 at 71.376 kb on + strand, within GFF3189 at 71.376 kb on + strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.377 kb on - strand, within GFF3189 at 71.418 kb on + strand at 71.758 kb on + strand at 71.840 kb on + strand at 71.841 kb on - strand at 71.844 kb on - strand at 71.906 kb on + strand, within GFF3190 at 72.041 kb on + strand, within GFF3190 at 72.088 kb on + strand, within GFF3190 at 72.294 kb on + strand, within GFF3190
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 69,570 + GFF3188 0.17 -0.4 69,621 + GFF3188 0.21 -0.1 69,622 - GFF3188 0.21 -0.8 69,624 + GFF3188 0.22 -0.4 69,625 - GFF3188 0.22 -0.0 69,625 - GFF3188 0.22 +0.3 69,852 + GFF3188 0.42 +0.6 69,853 - GFF3188 0.42 -0.1 69,853 - GFF3188 0.42 +0.1 69,953 + GFF3188 0.51 -0.1 69,953 + GFF3188 0.51 -0.2 69,953 + GFF3188 0.51 +0.0 69,954 - GFF3188 0.51 +1.6 69,954 - GFF3188 0.51 +0.9 69,996 + GFF3188 0.55 -0.0 70,242 + GFF3188 0.77 +0.7 70,254 + GFF3188 0.78 -0.4 70,254 + GFF3188 0.78 -0.1 70,254 + GFF3188 0.78 -0.1 70,254 + GFF3188 0.78 +0.4 70,254 + GFF3188 0.78 +0.7 70,255 - GFF3188 0.78 +0.0 70,255 - GFF3188 0.78 -0.4 70,255 - GFF3188 0.78 +0.2 70,255 - GFF3188 0.78 -0.2 70,260 + GFF3188 0.79 +0.4 70,261 - GFF3188 0.79 -0.3 70,326 + GFF3188 0.85 +0.2 70,330 - GFF3188 0.85 -0.1 70,415 + -0.0 70,514 + -1.1 70,514 + +0.3 70,515 - -1.8 70,626 + -0.2 70,811 + GFF3189 0.27 +1.0 70,811 + GFF3189 0.27 +0.4 70,812 - GFF3189 0.27 +0.2 71,106 + GFF3189 0.59 -0.9 71,376 + GFF3189 0.88 -0.4 71,376 + GFF3189 0.88 +0.1 71,376 + GFF3189 0.88 +0.6 71,377 - GFF3189 0.88 +0.3 71,377 - GFF3189 0.88 +0.6 71,377 - GFF3189 0.88 -1.7 71,377 - GFF3189 0.88 -0.6 71,377 - GFF3189 0.88 -0.1 71,377 - GFF3189 0.88 +0.2 71,377 - GFF3189 0.88 -0.3 71,377 - GFF3189 0.88 +1.3 71,418 + -0.2 71,758 + +0.2 71,840 + -1.0 71,841 - -0.2 71,844 - +1.2 71,906 + GFF3190 0.12 +0.1 72,041 + GFF3190 0.17 +0.4 72,088 + GFF3190 0.19 -0.3 72,294 + GFF3190 0.28 +0.3
Or see this region's nucleotide sequence