Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3147 and GFF3148 overlap by 4 nucleotides GFF3148 and GFF3149 overlap by 14 nucleotides GFF3149 and GFF3150 are separated by 14 nucleotides GFF3150 and GFF3151 are separated by 30 nucleotides GFF3151 and GFF3152 are separated by 157 nucleotides
GFF3147 - IncF plasmid conjugative transfer pilus assembly protein TraB, at 25,473 to 26,891
GFF3147
GFF3148 - IncF plasmid conjugative transfer pilus assembly protein TraK, at 26,888 to 27,883
GFF3148
GFF3149 - IncF plasmid conjugative transfer pilus assembly protein TraE, at 27,870 to 28,436
GFF3149
GFF3150 - IncF plasmid conjugative transfer pilus assembly protein TraL, at 28,451 to 28,750
GFF3150
GFF3151 - hypothetical protein, at 28,781 to 29,143
GFF3151
GFF3152 - FIG003465: Conjugative transfer outer membrane protein, at 29,301 to 29,651
GFF3152
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.916 kb on + strand at 26.916 kb on + strand at 26.917 kb on - strand at 26.917 kb on - strand at 26.917 kb on - strand at 27.337 kb on - strand, within GFF3148 at 27.337 kb on - strand, within GFF3148 at 27.402 kb on + strand, within GFF3148 at 27.402 kb on + strand, within GFF3148 at 27.403 kb on - strand, within GFF3148 at 27.403 kb on - strand, within GFF3148 at 28.142 kb on - strand, within GFF3149 at 28.232 kb on - strand, within GFF3149 at 28.734 kb on + strand at 28.734 kb on + strand at 28.734 kb on + strand at 28.735 kb on - strand at 28.851 kb on + strand, within GFF3151 at 28.851 kb on + strand, within GFF3151 at 28.852 kb on - strand, within GFF3151
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 26,916 + -0.4 26,916 + -0.6 26,917 - +0.2 26,917 - +0.4 26,917 - -0.2 27,337 - GFF3148 0.45 +0.3 27,337 - GFF3148 0.45 +0.5 27,402 + GFF3148 0.52 -0.2 27,402 + GFF3148 0.52 +0.3 27,403 - GFF3148 0.52 -0.4 27,403 - GFF3148 0.52 -0.1 28,142 - GFF3149 0.48 +0.1 28,232 - GFF3149 0.64 +0.7 28,734 + -0.6 28,734 + -0.1 28,734 + +1.1 28,735 - -0.4 28,851 + GFF3151 0.19 -0.1 28,851 + GFF3151 0.19 +0.8 28,852 - GFF3151 0.20 +0.5
Or see this region's nucleotide sequence