Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2958

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2957 and GFF2958 are separated by 28 nucleotidesGFF2958 and GFF2959 overlap by 8 nucleotides GFF2957 - TRAP transporter solute receptor, unknown substrate 5, at 36,118 to 37,131 GFF2957 GFF2958 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5, at 37,160 to 37,699 GFF2958 GFF2959 - TRAP-type C4-dicarboxylate transport system, large permease component, at 37,692 to 38,993 GFF2959 Position (kb) 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 36.160 kb on + strandat 36.160 kb on + strandat 36.161 kb on - strandat 36.238 kb on + strand, within GFF2957at 36.238 kb on + strand, within GFF2957at 36.238 kb on + strand, within GFF2957at 36.239 kb on - strand, within GFF2957at 36.239 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.245 kb on - strand, within GFF2957at 36.538 kb on + strand, within GFF2957at 36.539 kb on - strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.571 kb on + strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.572 kb on - strand, within GFF2957at 36.808 kb on + strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.809 kb on - strand, within GFF2957at 36.814 kb on + strand, within GFF2957at 37.055 kb on - strandat 37.401 kb on - strand, within GFF2958at 37.401 kb on - strand, within GFF2958at 37.701 kb on + strandat 37.702 kb on - strandat 37.791 kb on + strandat 37.792 kb on - strandat 37.863 kb on + strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.864 kb on - strand, within GFF2959at 37.939 kb on - strand, within GFF2959at 38.179 kb on - strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.265 kb on + strand, within GFF2959at 38.266 kb on - strand, within GFF2959at 38.266 kb on - strand, within GFF2959at 38.403 kb on + strand, within GFF2959at 38.404 kb on - strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.556 kb on + strand, within GFF2959at 38.557 kb on - strand, within GFF2959at 38.557 kb on - strand, within GFF2959

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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36,160 + -0.4
36,160 + +1.6
36,161 - +0.5
36,238 + GFF2957 0.12 +0.1
36,238 + GFF2957 0.12 -0.2
36,238 + GFF2957 0.12 +0.6
36,239 - GFF2957 0.12 -0.7
36,239 - GFF2957 0.12 -0.0
36,245 - GFF2957 0.13 +0.1
36,245 - GFF2957 0.13 -1.1
36,245 - GFF2957 0.13 +0.1
36,245 - GFF2957 0.13 -0.0
36,245 - GFF2957 0.13 +0.3
36,245 - GFF2957 0.13 +0.6
36,538 + GFF2957 0.41 -0.2
36,539 - GFF2957 0.42 -0.4
36,571 + GFF2957 0.45 -0.2
36,571 + GFF2957 0.45 -0.2
36,571 + GFF2957 0.45 +0.4
36,571 + GFF2957 0.45 -1.2
36,572 - GFF2957 0.45 -0.1
36,572 - GFF2957 0.45 +0.0
36,572 - GFF2957 0.45 -0.1
36,808 + GFF2957 0.68 -1.9
36,809 - GFF2957 0.68 +0.2
36,809 - GFF2957 0.68 +0.0
36,809 - GFF2957 0.68 +0.0
36,809 - GFF2957 0.68 +0.2
36,814 + GFF2957 0.69 +0.3
37,055 - +1.8
37,401 - GFF2958 0.45 -0.2
37,401 - GFF2958 0.45 -0.7
37,701 + -0.4
37,702 - -2.3
37,791 + -0.0
37,792 - +1.4
37,863 + GFF2959 0.13 -1.3
37,864 - GFF2959 0.13 +0.1
37,864 - GFF2959 0.13 +0.4
37,864 - GFF2959 0.13 +1.6
37,864 - GFF2959 0.13 -0.9
37,939 - GFF2959 0.19 -0.1
38,179 - GFF2959 0.37 +0.2
38,265 + GFF2959 0.44 -0.9
38,265 + GFF2959 0.44 +0.6
38,265 + GFF2959 0.44 +0.1
38,265 + GFF2959 0.44 -1.4
38,265 + GFF2959 0.44 -1.2
38,266 - GFF2959 0.44 -0.2
38,266 - GFF2959 0.44 +0.4
38,403 + GFF2959 0.55 +1.4
38,404 - GFF2959 0.55 +0.9
38,556 + GFF2959 0.66 -0.5
38,556 + GFF2959 0.66 +1.0
38,556 + GFF2959 0.66 +1.0
38,557 - GFF2959 0.66 +0.9
38,557 - GFF2959 0.66 -0.2

Or see this region's nucleotide sequence