Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF277

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF276 and GFF277 are separated by 284 nucleotidesGFF277 and GFF278 are separated by 50 nucleotides GFF276 - Peptide chain release factor 2; programmed frameshift-containing, at 290,866 to 291,765 GFF276 GFF277 - hypothetical protein, at 292,050 to 292,607 GFF277 GFF278 - Alpha/beta hydrolase fold, at 292,658 to 293,575 GFF278 Position (kb) 292 293Strain fitness (log2 ratio) -2 -1 0 1at 291.993 kb on - strandat 291.997 kb on - strandat 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.195 kb on + strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.196 kb on - strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.207 kb on + strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.208 kb on - strand, within GFF277at 292.214 kb on - strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.240 kb on + strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.241 kb on - strand, within GFF277at 292.295 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.424 kb on - strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.444 kb on + strand, within GFF277at 292.608 kb on - strandat 292.618 kb on + strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.619 kb on - strandat 292.654 kb on + strandat 292.654 kb on + strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.655 kb on - strandat 292.878 kb on + strand, within GFF278at 292.879 kb on - strand, within GFF278at 292.906 kb on - strand, within GFF278at 293.067 kb on + strand, within GFF278at 293.067 kb on + strand, within GFF278at 293.220 kb on + strand, within GFF278at 293.220 kb on + strand, within GFF278at 293.221 kb on + strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.221 kb on - strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.331 kb on + strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.332 kb on - strand, within GFF278at 293.517 kb on + strandat 293.517 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.571 kb on + strandat 293.572 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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291,993 - -1.1
291,997 - -0.8
292,195 + GFF277 0.26 +0.7
292,195 + GFF277 0.26 -0.3
292,195 + GFF277 0.26 +0.4
292,195 + GFF277 0.26 +0.3
292,196 - GFF277 0.26 +0.2
292,196 - GFF277 0.26 -1.0
292,196 - GFF277 0.26 +0.5
292,196 - GFF277 0.26 +0.2
292,196 - GFF277 0.26 -1.2
292,207 + GFF277 0.28 -0.2
292,207 + GFF277 0.28 +0.3
292,208 - GFF277 0.28 -0.0
292,208 - GFF277 0.28 -0.9
292,208 - GFF277 0.28 +0.1
292,214 - GFF277 0.29 +1.2
292,240 + GFF277 0.34 -0.1
292,240 + GFF277 0.34 +0.5
292,240 + GFF277 0.34 -0.5
292,240 + GFF277 0.34 -0.3
292,240 + GFF277 0.34 +0.0
292,240 + GFF277 0.34 +1.1
292,240 + GFF277 0.34 +0.3
292,241 - GFF277 0.34 +0.1
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.1
292,241 - GFF277 0.34 -0.6
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.5
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 +0.2
292,241 - GFF277 0.34 -0.0
292,241 - GFF277 0.34 -0.2
292,241 - GFF277 0.34 -0.2
292,295 - GFF277 0.44 -0.2
292,424 - GFF277 0.67 -0.3
292,424 - GFF277 0.67 +0.4
292,444 + GFF277 0.71 +0.2
292,444 + GFF277 0.71 +0.3
292,608 - +0.3
292,618 + -0.8
292,619 - -0.3
292,619 - +0.1
292,619 - -0.0
292,619 - +0.2
292,619 - -0.3
292,619 - +0.2
292,654 + -0.7
292,654 + +0.2
292,655 - +0.2
292,655 - -0.8
292,655 - +1.2
292,655 - -0.0
292,878 + GFF278 0.24 +1.2
292,879 - GFF278 0.24 -0.6
292,906 - GFF278 0.27 +0.1
293,067 + GFF278 0.45 -0.1
293,067 + GFF278 0.45 -0.4
293,220 + GFF278 0.61 -0.2
293,220 + GFF278 0.61 +0.0
293,221 + GFF278 0.61 +0.1
293,221 - GFF278 0.61 -1.0
293,221 - GFF278 0.61 +0.2
293,221 - GFF278 0.61 -0.0
293,221 - GFF278 0.61 -0.2
293,221 - GFF278 0.61 -0.5
293,221 - GFF278 0.61 -0.1
293,331 + GFF278 0.73 +0.0
293,331 + GFF278 0.73 +1.1
293,331 + GFF278 0.73 -0.5
293,331 + GFF278 0.73 +0.2
293,332 - GFF278 0.73 -0.4
293,332 - GFF278 0.73 -0.2
293,332 - GFF278 0.73 -0.1
293,332 - GFF278 0.73 -1.8
293,332 - GFF278 0.73 -2.2
293,517 + +0.2
293,517 + -0.8
293,571 + -0.2
293,571 + -1.3
293,571 + +0.2
293,571 + +0.1
293,572 - -0.6

Or see this region's nucleotide sequence