Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2762 and GFF2763 are separated by 155 nucleotides GFF2763 and GFF2764 are separated by 35 nucleotides GFF2764 and GFF2765 are separated by 50 nucleotides
GFF2762 - FIG00347566: hypothetical protein, at 360,780 to 362,651
GFF2762
GFF2763 - Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23), at 362,807 to 363,646
GFF2763
GFF2764 - Permease of the drug/metabolite transporter (DMT) superfamily, at 363,682 to 364,593
GFF2764
GFF2765 - Uracil-DNA glycosylase, family 4, at 364,644 to 365,507
GFF2765
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 361.861 kb on + strand, within GFF2762 at 361.861 kb on + strand, within GFF2762 at 361.861 kb on + strand, within GFF2762 at 361.861 kb on + strand, within GFF2762 at 361.900 kb on + strand, within GFF2762 at 361.900 kb on + strand, within GFF2762 at 361.900 kb on + strand, within GFF2762 at 361.901 kb on - strand, within GFF2762 at 362.057 kb on - strand, within GFF2762 at 362.192 kb on - strand, within GFF2762 at 362.206 kb on + strand, within GFF2762 at 362.206 kb on + strand, within GFF2762 at 362.206 kb on + strand, within GFF2762 at 362.206 kb on + strand, within GFF2762 at 362.206 kb on + strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.207 kb on - strand, within GFF2762 at 362.230 kb on + strand, within GFF2762 at 362.272 kb on + strand, within GFF2762 at 362.705 kb on - strand at 362.727 kb on + strand at 362.727 kb on + strand at 362.728 kb on - strand at 362.728 kb on - strand at 362.893 kb on - strand, within GFF2763 at 362.893 kb on - strand, within GFF2763 at 363.138 kb on + strand, within GFF2763 at 363.306 kb on + strand, within GFF2763 at 363.330 kb on + strand, within GFF2763 at 363.330 kb on + strand, within GFF2763 at 363.330 kb on + strand, within GFF2763 at 363.525 kb on + strand, within GFF2763 at 363.526 kb on - strand, within GFF2763 at 363.657 kb on + strand at 363.669 kb on + strand at 363.988 kb on + strand, within GFF2764 at 363.988 kb on + strand, within GFF2764 at 363.988 kb on + strand, within GFF2764 at 364.339 kb on + strand, within GFF2764 at 364.339 kb on + strand, within GFF2764 at 364.340 kb on - strand, within GFF2764 at 364.340 kb on - strand, within GFF2764 at 364.427 kb on + strand, within GFF2764 at 364.427 kb on + strand, within GFF2764 at 364.427 kb on + strand, within GFF2764 at 364.428 kb on - strand, within GFF2764 at 364.428 kb on - strand, within GFF2764
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 361,861 + GFF2762 0.58 -0.0 361,861 + GFF2762 0.58 +0.4 361,861 + GFF2762 0.58 -1.6 361,861 + GFF2762 0.58 +0.3 361,900 + GFF2762 0.60 +0.5 361,900 + GFF2762 0.60 +0.1 361,900 + GFF2762 0.60 +0.2 361,901 - GFF2762 0.60 +0.1 362,057 - GFF2762 0.68 +0.3 362,192 - GFF2762 0.75 +1.1 362,206 + GFF2762 0.76 -0.3 362,206 + GFF2762 0.76 +0.3 362,206 + GFF2762 0.76 +0.4 362,206 + GFF2762 0.76 -0.8 362,206 + GFF2762 0.76 +0.8 362,207 - GFF2762 0.76 +0.3 362,207 - GFF2762 0.76 +0.1 362,207 - GFF2762 0.76 +0.6 362,207 - GFF2762 0.76 -0.0 362,207 - GFF2762 0.76 +0.9 362,207 - GFF2762 0.76 -0.1 362,230 + GFF2762 0.77 +0.5 362,272 + GFF2762 0.80 -0.1 362,705 - +0.6 362,727 + +0.8 362,727 + -0.1 362,728 - +0.3 362,728 - +0.2 362,893 - GFF2763 0.10 -2.5 362,893 - GFF2763 0.10 -1.3 363,138 + GFF2763 0.39 -2.5 363,306 + GFF2763 0.59 -1.1 363,330 + GFF2763 0.62 -0.5 363,330 + GFF2763 0.62 -2.4 363,330 + GFF2763 0.62 -3.3 363,525 + GFF2763 0.85 -2.7 363,526 - GFF2763 0.86 -3.2 363,657 + +0.8 363,669 + -0.1 363,988 + GFF2764 0.34 -1.0 363,988 + GFF2764 0.34 -0.4 363,988 + GFF2764 0.34 +1.3 364,339 + GFF2764 0.72 -0.4 364,339 + GFF2764 0.72 -0.8 364,340 - GFF2764 0.72 +0.4 364,340 - GFF2764 0.72 -0.5 364,427 + GFF2764 0.82 -0.7 364,427 + GFF2764 0.82 -0.1 364,427 + GFF2764 0.82 +0.1 364,428 - GFF2764 0.82 -1.9 364,428 - GFF2764 0.82 +0.1
Or see this region's nucleotide sequence