Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2595 and GFF2596 overlap by 30 nucleotides GFF2596 and GFF2597 are separated by 79 nucleotides GFF2597 and GFF2598 are separated by 23 nucleotides GFF2598 and GFF2599 are separated by 8 nucleotides
GFF2595 - hypothetical protein, at 188,620 to 189,363
GFF2595
GFF2596 - hypothetical protein, at 189,334 to 189,453
GFF2596
GFF2597 - Hypothetical protein YaeJ with similarity to translation release factor, at 189,533 to 189,937
GFF2597
GFF2598 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 189,961 to 190,722
GFF2598
GFF2599 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 190,731 to 192,146
GFF2599
Position (kb) 189
190
191 Strain fitness (log2 ratio) -1
0
1 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 188.972 kb on + strand, within GFF2595 at 189.290 kb on + strand at 189.291 kb on - strand at 189.291 kb on - strand at 189.451 kb on + strand at 189.482 kb on - strand at 189.488 kb on + strand at 189.510 kb on + strand at 190.160 kb on + strand, within GFF2598 at 190.160 kb on + strand, within GFF2598 at 190.490 kb on + strand, within GFF2598 at 190.491 kb on - strand, within GFF2598 at 190.957 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.119 kb on + strand, within GFF2599 at 191.120 kb on - strand, within GFF2599 at 191.120 kb on - strand, within GFF2599 at 191.126 kb on - strand, within GFF2599 at 191.191 kb on + strand, within GFF2599 at 191.192 kb on - strand, within GFF2599 at 191.272 kb on + strand, within GFF2599 at 191.273 kb on - strand, within GFF2599
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 188,972 + GFF2595 0.47 -0.8 188,972 + GFF2595 0.47 +0.6 188,972 + GFF2595 0.47 +1.2 189,290 + -0.1 189,291 - +0.6 189,291 - -1.1 189,451 + -0.1 189,482 - +0.1 189,488 + -1.1 189,510 + -0.5 190,160 + GFF2598 0.26 +0.4 190,160 + GFF2598 0.26 +0.1 190,490 + GFF2598 0.69 +0.5 190,491 - GFF2598 0.70 +0.3 190,957 + GFF2599 0.16 +0.2 191,119 + GFF2599 0.27 -0.6 191,119 + GFF2599 0.27 +0.1 191,119 + GFF2599 0.27 +0.5 191,119 + GFF2599 0.27 +0.7 191,119 + GFF2599 0.27 +0.0 191,119 + GFF2599 0.27 -0.3 191,119 + GFF2599 0.27 -0.4 191,120 - GFF2599 0.27 -0.1 191,120 - GFF2599 0.27 -0.5 191,126 - GFF2599 0.28 -0.2 191,191 + GFF2599 0.32 -0.0 191,192 - GFF2599 0.33 -0.6 191,272 + GFF2599 0.38 +0.7 191,273 - GFF2599 0.38 -1.1
Or see this region's nucleotide sequence