Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2278

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,161,436	+				-0.0
1,161,436	+				-0.4
1,161,436	+				+0.1
1,161,436	+				+0.1
1,161,436	+				+0.4
1,161,436	+				+1.0
1,161,437	-				-0.2
1,161,437	-				+2.1
1,161,437	-				+0.0
1,161,437	-				+0.3
1,161,619	+		GFF2276	0.64	-0.4
1,161,619	+		GFF2276	0.64	+1.0
1,161,619	+		GFF2276	0.64	-1.3
1,161,619	+		GFF2276	0.64	-0.2
1,161,672	+				+0.2
1,161,672	+				+0.0
1,161,672	+				-0.2
1,161,673	-				+1.0
1,161,673	-				+0.2
1,161,673	-				+0.0
1,161,718	+				+0.3
1,161,718	+				-0.7
1,161,718	+				-0.9
1,161,718	+				+0.2
1,161,718	+				-0.7
1,161,718	+				-0.8
1,161,718	+				+0.4
1,161,718	+				+0.1
1,161,718	+				-0.9
1,161,718	+				+0.1
1,161,718	+				+0.2
1,161,718	+				-1.2
1,161,718	+				+0.6
1,161,718	+				+1.9
1,161,718	+				+0.1
1,161,719	-				+0.5
1,161,719	-				+0.3
1,161,719	-				+0.2
1,161,719	-				-0.1
1,161,719	-				+0.1
1,161,719	-				-0.6
1,161,719	-				-0.5
1,161,719	-				-0.1
1,161,719	-				-0.5
1,161,719	-				+0.3
1,161,719	-				+0.3
1,161,720	+				-0.2
1,161,720	+				-0.7
1,161,720	+				+0.1
1,161,720	+				-0.3
1,161,720	+				-1.1
1,161,720	+				-0.2
1,161,919	+				-0.2
1,161,919	+				+0.8
1,161,919	+				-0.4
1,161,919	+				-0.6
1,161,955	+				-0.1
1,161,955	+				-0.3
1,161,956	-				+0.0
1,161,956	-				+0.2
1,161,956	-				+0.0
1,161,956	-				+0.0
1,161,994	+				+0.0
1,161,994	+				-1.9
1,161,994	+				-0.6
1,161,994	+				-0.7
1,161,994	+				-0.8
1,161,994	+				-0.4
1,161,994	+				-0.6
1,161,994	+				+1.7
1,161,994	+				+0.1
1,161,994	+				-0.7
1,161,994	+				-0.2
1,161,994	+				+0.9
1,161,994	+				-0.3
1,161,994	+				-0.5
1,161,994	+				+0.0
1,161,994	+				-0.2
1,161,994	+				+0.0
1,161,994	+				-0.1
1,161,994	+				-0.1
1,161,994	+				-1.2
1,161,994	+				+0.8
1,161,994	+				-0.2
1,161,994	+				+0.1
1,161,994	+				-0.5
1,161,994	+				-1.0
1,161,994	+				+0.1
1,161,994	+				-0.3
1,161,994	+				+0.7
1,161,994	+				-1.0
1,161,995	-				-0.1
1,161,995	-				-0.6
1,161,995	-				-0.2
1,161,995	-				+0.0
1,161,995	-				+0.6
1,161,995	-				-0.4
1,161,995	-				+0.2
1,161,995	-				+0.3
1,161,995	-				+0.0
1,161,995	-				-0.0
1,161,995	-				+0.7
1,161,995	-				+0.3
1,161,995	-				+0.4
1,161,995	-				-0.4
1,161,995	-				-0.1
1,161,995	-				+0.0
1,161,995	-				-0.3
1,161,995	-				-0.1
1,161,995	-				+0.1
1,161,995	-				-0.2
1,161,995	-				+0.6
1,162,055	+				-0.1
1,162,055	+				+1.0
1,162,055	+				+1.6
1,162,055	+				+0.1
1,162,056	-				+0.5
1,162,108	+		GFF2277	0.30	-0.1
1,162,108	+		GFF2277	0.30	+1.0
1,162,108	+		GFF2277	0.30	+0.4
1,162,108	+		GFF2277	0.30	-0.3
1,162,108	+		GFF2277	0.30	+0.8
1,162,108	+		GFF2277	0.30	+1.0
1,162,108	+		GFF2277	0.30	+0.3
1,162,108	+		GFF2277	0.30	+0.0
1,162,108	+		GFF2277	0.30	-0.2
1,162,109	-		GFF2277	0.31	+0.1
1,162,109	-		GFF2277	0.31	+0.0
1,162,109	-		GFF2277	0.31	-0.2
1,162,222	+				-0.2
1,162,239	+				-0.2
1,162,273	+				-0.0
1,162,273	+				+0.3
1,162,273	+				+0.1
1,162,273	+				-0.2
1,162,273	+				-0.2
1,162,274	-				-0.7
1,162,274	-				-0.9
1,162,274	-				+0.6
1,162,274	-				+0.8
1,162,278	+				+0.4
1,162,278	+				-0.5
1,162,278	+				-0.1
1,162,278	+				+0.0
1,162,278	+				-0.5
1,162,278	+				-0.6
1,162,278	+				-0.1
1,162,279	-				+0.5
1,162,279	-				+0.2
1,162,279	-				-0.8
1,162,288	+				-0.3
1,162,288	+				+0.3
1,162,311	+				+1.6
1,162,311	+				-1.0
1,162,312	-				-0.3
1,162,312	-				+1.6
1,162,312	-				-0.1
1,162,325	+				+0.8
1,162,325	+				+0.4
1,162,325	+				-1.1
1,162,325	+				-0.2
1,162,325	+				-1.1
1,162,325	+				+1.1
1,162,326	-				+0.3
1,162,326	-				+0.2
1,162,326	-				-0.5
1,162,541	-				+0.8
1,162,541	-				-0.1
1,162,609	+				+0.2
1,162,609	+				-0.6
1,162,609	+				+0.0
1,162,609	+				-0.0
1,162,609	+				-0.3
1,162,609	+				+1.0
1,162,609	+				-0.5
1,162,610	-				+0.5
1,162,610	-				+0.3
1,162,610	-				-0.2
1,162,621	+				-0.5
1,162,622	-				-0.8
1,162,804	+		GFF2278	0.14	+0.4
1,162,805	-		GFF2278	0.14	-0.0
1,162,805	-		GFF2278	0.14	-0.2
1,162,805	-		GFF2278	0.14	-0.4
1,162,805	-		GFF2278	0.14	+0.2
1,162,914	-		GFF2278	0.18	-0.4
1,162,930	+		GFF2278	0.19	-0.1
1,162,930	+		GFF2278	0.19	-0.1
1,162,930	+		GFF2278	0.19	+0.8
1,162,931	-		GFF2278	0.19	-0.1
1,162,931	-		GFF2278	0.19	-0.1
1,162,965	+		GFF2278	0.20	+0.6
1,163,254	+		GFF2278	0.31	-0.3
1,163,254	+		GFF2278	0.31	-0.5
1,163,254	+		GFF2278	0.31	-0.1
1,163,254	+		GFF2278	0.31	-0.2
1,163,255	-		GFF2278	0.31	+2.0
1,163,255	-		GFF2278	0.31	+0.3
1,163,362	+		GFF2278	0.35	-0.1
1,163,363	-		GFF2278	0.35	-0.2
1,163,471	-		GFF2278	0.39	+0.4
1,163,630	-		GFF2278	0.45	+0.3
1,163,680	+		GFF2278	0.47	-0.0
1,163,686	+		GFF2278	0.47	-0.3
1,163,687	-		GFF2278	0.47	-1.2
1,163,687	-		GFF2278	0.47	+0.8
1,163,795	-		GFF2278	0.51	+1.4
1,163,795	-		GFF2278	0.51	-0.2
1,163,823	+		GFF2278	0.52	+0.0
1,163,824	+		GFF2278	0.52	+0.4
1,163,824	+		GFF2278	0.52	-0.2
1,163,825	-		GFF2278	0.52	-0.2
1,163,825	-		GFF2278	0.52	-0.1
1,163,825	-		GFF2278	0.52	-0.4
1,163,825	-		GFF2278	0.52	-0.2
1,163,845	+		GFF2278	0.53	+0.2
1,163,902	+		GFF2278	0.55	-0.6
1,163,902	+		GFF2278	0.55	-0.2
1,163,902	+		GFF2278	0.55	+0.6
1,163,902	+		GFF2278	0.55	+0.2
1,163,902	+		GFF2278	0.55	+0.4
1,163,903	-		GFF2278	0.55	+0.2
1,163,903	-		GFF2278	0.55	-0.0
1,163,903	-		GFF2278	0.55	+0.8
1,164,010	+		GFF2278	0.59	-0.2
1,164,010	+		GFF2278	0.59	+0.3
1,164,010	+		GFF2278	0.59	-0.1
1,164,010	+		GFF2278	0.59	-0.2
1,164,011	-		GFF2278	0.59	+0.4
1,164,011	-		GFF2278	0.59	+0.6
1,164,011	-		GFF2278	0.59	+0.1
1,164,011	-		GFF2278	0.59	-0.3
1,164,011	-		GFF2278	0.59	+0.1
1,164,118	+		GFF2278	0.63	-0.3
1,164,118	+		GFF2278	0.63	-0.5
1,164,119	-		GFF2278	0.63	+0.2
1,164,119	-		GFF2278	0.63	-0.2
1,164,119	-		GFF2278	0.63	+0.0
1,164,119	-		GFF2278	0.63	+0.1
1,164,193	+		GFF2278	0.66	+0.0
1,164,194	-		GFF2278	0.66	-0.3
1,164,194	-		GFF2278	0.66	+0.9
1,164,226	+		GFF2278	0.67	+0.7
1,164,227	-		GFF2278	0.67	-0.5
1,164,257	-		GFF2278	0.69	+0.1
1,164,278	-		GFF2278	0.69	+1.0
1,164,334	+		GFF2278	0.71	-0.4
1,164,335	-		GFF2278	0.71	+0.1
1,164,335	-		GFF2278	0.71	+0.1
1,164,442	+		GFF2278	0.75	-0.1
1,164,442	+		GFF2278	0.75	-0.1
1,164,442	+		GFF2278	0.75	+0.6
1,164,442	+		GFF2278	0.75	-0.1
1,164,442	+		GFF2278	0.75	-0.1
1,164,442	+		GFF2278	0.75	+0.4
1,164,442	+		GFF2278	0.75	+0.1
1,164,442	+		GFF2278	0.75	-0.2
1,164,442	+		GFF2278	0.75	+0.1
1,164,442	+		GFF2278	0.75	+1.6
1,164,442	+		GFF2278	0.75	-0.4
1,164,442	+		GFF2278	0.75	+0.0
1,164,443	-		GFF2278	0.75	-0.3
1,164,443	-		GFF2278	0.75	-0.4
1,164,443	-		GFF2278	0.75	+1.4
1,164,443	-		GFF2278	0.75	+0.9
1,164,443	-		GFF2278	0.75	+0.2
1,164,443	-		GFF2278	0.75	+0.6
1,164,443	-		GFF2278	0.75	+0.0
1,164,544	+		GFF2278	0.79	-0.1
1,164,544	+		GFF2278	0.79	+0.1
1,164,544	+		GFF2278	0.79	+0.7
1,164,545	-		GFF2278	0.79	+1.9
1,164,545	-		GFF2278	0.79	-0.8
1,164,545	-		GFF2278	0.79	-0.2
1,164,545	-		GFF2278	0.79	+1.4
1,164,653	-		GFF2278	0.83	+0.1
1,164,733	+		GFF2278	0.86	+0.3
1,164,733	+		GFF2278	0.86	+1.0
1,164,734	-		GFF2278	0.86	+0.0
1,164,772	+		GFF2278	0.88	-0.3
1,164,773	-		GFF2278	0.88	-0.2
1,164,980	-				-0.2
1,164,980	-				+0.6
1,165,075	+				-0.1
1,165,076	-				-0.2
1,165,305	+		GFF2279	0.24	+0.6
1,165,323	+		GFF2279	0.27	-0.5
1,165,323	+		GFF2279	0.27	-0.7
1,165,323	+		GFF2279	0.27	-0.3
1,165,324	-		GFF2279	0.27	-0.7
1,165,324	-		GFF2279	0.27	+0.5
1,165,405	-		GFF2279	0.36	-0.1
1,165,444	-		GFF2279	0.40	-0.3
1,165,444	-		GFF2279	0.40	+0.1
1,165,449	+		GFF2279	0.41	-0.1
1,165,449	+		GFF2279	0.41	+0.1
1,165,449	+		GFF2279	0.41	-0.5
1,165,450	-		GFF2279	0.41	-1.6
1,165,450	-		GFF2279	0.41	-0.1
1,165,450	-		GFF2279	0.41	+0.6
1,165,450	-		GFF2279	0.41	+0.1
1,165,450	-		GFF2279	0.41	+0.7
1,165,450	-		GFF2279	0.41	-0.2
1,165,450	-		GFF2279	0.41	+0.1
1,165,450	-		GFF2279	0.41	-0.7
1,165,578	+		GFF2279	0.56	-0.6
1,165,578	+		GFF2279	0.56	+0.1
1,165,578	+		GFF2279	0.56	+0.4
1,165,596	+		GFF2279	0.58	-0.8
1,165,596	+		GFF2279	0.58	-0.0
1,165,597	-		GFF2279	0.58	+0.2
1,165,597	-		GFF2279	0.58	-1.0
1,165,597	-		GFF2279	0.58	-0.7
1,165,752	+		GFF2279	0.76	-0.3
1,165,753	-		GFF2279	0.76	+0.4
1,165,842	+		GFF2279	0.86	+0.0
1,165,950	+				-0.7
1,165,951	-				-0.3
1,166,039	+				+2.2
1,166,039	+				-0.2
1,166,039	+				+1.0
1,166,039	+				-0.6
1,166,039	+				-0.6
1,166,039	+				-0.7
1,166,040	-				-0.8
1,166,040	-				+0.1
1,166,040	-				+0.2
1,166,040	-				-0.1
1,166,040	-				-0.2
1,166,040	-				+0.8
1,166,040	-				+0.7