Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2190

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,079,096	+		GFF2188	0.16	-0.4
1,079,096	+		GFF2188	0.16	-0.2
1,079,097	-		GFF2188	0.17	-0.4
1,079,097	-		GFF2188	0.17	-1.6
1,079,097	-		GFF2188	0.17	+0.1
1,079,097	-		GFF2188	0.17	+0.2
1,079,097	-		GFF2188	0.17	+0.1
1,079,097	-		GFF2188	0.17	+0.3
1,079,104	+		GFF2188	0.18	-0.7
1,079,105	-		GFF2188	0.18	-0.4
1,079,135	+		GFF2188	0.24	+0.4
1,079,201	+		GFF2188	0.38	+1.6
1,079,202	-		GFF2188	0.38	+0.6
1,079,294	+		GFF2188	0.56	+0.4
1,079,295	-		GFF2188	0.57	+0.2
1,079,295	-		GFF2188	0.57	-0.3
1,079,593	+		GFF2189	0.40	-0.7
1,079,593	+		GFF2189	0.40	+0.0
1,079,593	+		GFF2189	0.40	+0.9
1,079,593	+		GFF2189	0.40	+0.1
1,079,593	+		GFF2189	0.40	+0.1
1,079,792	+				-0.4
1,079,792	+				+0.2
1,079,792	+				-0.0
1,079,792	+				-0.4
1,079,792	+				+1.6
1,079,792	+				-0.7
1,079,793	-				-0.8
1,079,815	+				-0.2
1,079,815	+				-1.1
1,079,988	+		GFF2190	0.48	-2.5
1,079,994	+		GFF2190	0.50	+0.3
1,079,994	+		GFF2190	0.50	-0.7
1,079,995	-		GFF2190	0.51	-0.7
1,079,995	-		GFF2190	0.51	-0.4
1,080,099	+				+0.3
1,080,099	+				+0.6
1,080,100	-				+0.0
1,080,103	+				-0.7
1,080,104	-				+0.7
1,080,200	+				+0.7
1,080,200	+				+1.0
1,080,200	+				-0.5
1,080,200	+				+0.5
1,080,200	+				-0.7
1,080,200	+				-0.3
1,080,200	+				-0.6
1,080,201	-				-0.1
1,080,201	-				+1.1
1,080,201	-				+0.6
1,080,201	-				-0.9
1,080,201	-				+0.6
1,080,225	+				-0.2
1,080,226	-				+0.1
1,080,338	-				-0.1