Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2131

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
1,019,281	+		GFF2129	0.87	+0.1
1,019,281	+		GFF2129	0.87	+0.6
1,019,282	-		GFF2129	0.87	-0.4
1,019,330	+				-0.1
1,019,330	+				+1.3
1,019,330	+				+0.7
1,019,331	-				-0.3
1,019,331	-				-0.2
1,019,331	-				+0.1
1,019,482	+				+0.6
1,019,482	+				-2.3
1,019,482	+				-1.3
1,019,482	+				-0.3
1,019,482	+				+0.2
1,019,482	+				+0.3
1,019,483	-				-0.6
1,019,740	+		GFF2130	0.40	-0.1
1,019,741	-		GFF2130	0.40	-0.2
1,019,741	-		GFF2130	0.40	-0.4
1,020,068	-		GFF2130	0.86	-0.4
1,020,569	+		GFF2131	0.52	+0.0
1,020,569	+		GFF2131	0.52	+0.7
1,020,569	+		GFF2131	0.52	-0.9
1,020,569	+		GFF2131	0.52	+0.4
1,020,570	-		GFF2131	0.52	-0.3
1,020,570	-		GFF2131	0.52	-1.5
1,020,710	+		GFF2131	0.76	-0.3
1,020,710	+		GFF2131	0.76	+0.0
1,020,711	-		GFF2131	0.76	-1.1
1,020,711	-		GFF2131	0.76	-1.8
1,020,711	-		GFF2131	0.76	-0.5
1,020,711	-		GFF2131	0.76	-0.4
1,020,802	-				-0.1
1,020,866	+				+0.2
1,020,866	+				+0.3
1,020,867	-				-0.2
1,020,867	-				+1.1
1,020,890	+				-0.3
1,021,012	+				-0.1
1,021,013	-				+0.1
1,021,284	+		GFF2132	0.31	+0.1
1,021,299	-		GFF2132	0.32	+0.1