Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1879 and GFF1880 are separated by 18 nucleotides GFF1880 and GFF1881 are separated by 15 nucleotides GFF1881 and GFF1882 are separated by 10 nucleotides GFF1882 and GFF1883 are separated by 13 nucleotides
GFF1879 - TRAP-type C4-dicarboxylate transport system, large permease component, at 742,666 to 743,967
GFF1879
GFF1880 - Putative threonine efflux protein, at 743,986 to 744,621
GFF1880
GFF1881 - Exodeoxyribonuclease III (EC 3.1.11.2), at 744,637 to 745,428
GFF1881
GFF1882 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 745,439 to 746,155
GFF1882
GFF1883 - hypothetical protein, at 746,169 to 746,852
GFF1883
Position (kb) 744
745
746 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 743.869 kb on + strand at 743.887 kb on + strand at 743.888 kb on - strand at 743.923 kb on + strand at 743.923 kb on + strand at 743.923 kb on + strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 743.924 kb on - strand at 744.170 kb on + strand, within GFF1880 at 744.171 kb on - strand, within GFF1880 at 744.171 kb on - strand, within GFF1880 at 744.356 kb on + strand, within GFF1880 at 744.357 kb on - strand, within GFF1880 at 744.357 kb on - strand, within GFF1880 at 744.357 kb on - strand, within GFF1880 at 744.374 kb on + strand, within GFF1880 at 744.374 kb on + strand, within GFF1880 at 744.374 kb on + strand, within GFF1880 at 744.375 kb on - strand, within GFF1880 at 744.375 kb on - strand, within GFF1880 at 744.593 kb on + strand at 744.594 kb on - strand at 744.594 kb on - strand at 744.653 kb on + strand at 744.698 kb on + strand at 744.698 kb on + strand at 744.698 kb on + strand at 744.698 kb on + strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.699 kb on - strand at 744.749 kb on + strand, within GFF1881 at 744.749 kb on + strand, within GFF1881 at 744.749 kb on + strand, within GFF1881 at 744.749 kb on + strand, within GFF1881 at 744.749 kb on + strand, within GFF1881 at 744.749 kb on + strand, within GFF1881 at 744.750 kb on - strand, within GFF1881 at 744.750 kb on - strand, within GFF1881 at 744.750 kb on - strand, within GFF1881 at 744.750 kb on - strand, within GFF1881 at 744.779 kb on + strand, within GFF1881 at 744.809 kb on + strand, within GFF1881 at 744.809 kb on + strand, within GFF1881 at 744.809 kb on + strand, within GFF1881 at 744.810 kb on - strand, within GFF1881 at 744.810 kb on - strand, within GFF1881 at 744.810 kb on - strand, within GFF1881 at 744.845 kb on + strand, within GFF1881 at 744.846 kb on - strand, within GFF1881 at 744.846 kb on - strand, within GFF1881 at 745.025 kb on + strand, within GFF1881 at 745.026 kb on - strand, within GFF1881 at 745.046 kb on + strand, within GFF1881 at 745.046 kb on + strand, within GFF1881 at 745.047 kb on - strand, within GFF1881 at 745.047 kb on - strand, within GFF1881 at 745.047 kb on - strand, within GFF1881 at 745.091 kb on + strand, within GFF1881 at 745.091 kb on + strand, within GFF1881 at 745.091 kb on + strand, within GFF1881 at 745.092 kb on - strand, within GFF1881 at 745.092 kb on - strand, within GFF1881 at 745.092 kb on - strand, within GFF1881 at 745.092 kb on - strand, within GFF1881 at 745.178 kb on + strand, within GFF1881 at 745.215 kb on - strand, within GFF1881 at 745.215 kb on - strand, within GFF1881 at 745.215 kb on - strand, within GFF1881 at 745.232 kb on + strand, within GFF1881 at 745.232 kb on + strand, within GFF1881 at 745.233 kb on - strand, within GFF1881 at 745.233 kb on - strand, within GFF1881 at 745.250 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.335 kb on + strand, within GFF1881 at 745.336 kb on - strand, within GFF1881 at 745.336 kb on - strand, within GFF1881 at 745.336 kb on - strand, within GFF1881 at 745.336 kb on - strand, within GFF1881 at 745.336 kb on - strand, within GFF1881 at 745.450 kb on + strand at 745.450 kb on + strand at 745.450 kb on + strand at 745.451 kb on - strand at 745.451 kb on - strand at 745.575 kb on - strand, within GFF1882 at 745.575 kb on - strand, within GFF1882 at 745.634 kb on + strand, within GFF1882 at 745.635 kb on - strand, within GFF1882 at 745.692 kb on - strand, within GFF1882 at 745.692 kb on - strand, within GFF1882 at 745.692 kb on - strand, within GFF1882 at 745.692 kb on - strand, within GFF1882 at 745.692 kb on - strand, within GFF1882 at 745.763 kb on + strand, within GFF1882 at 745.763 kb on + strand, within GFF1882 at 745.764 kb on - strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.009 kb on + strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.010 kb on - strand, within GFF1882 at 746.072 kb on + strand, within GFF1882 at 746.072 kb on + strand, within GFF1882 at 746.072 kb on + strand, within GFF1882 at 746.073 kb on - strand, within GFF1882 at 746.129 kb on + strand at 746.130 kb on - strand at 746.141 kb on + strand at 746.142 kb on - strand at 746.142 kb on - strand at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.268 kb on + strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.269 kb on - strand, within GFF1883 at 746.391 kb on + strand, within GFF1883 at 746.391 kb on + strand, within GFF1883 at 746.391 kb on + strand, within GFF1883 at 746.391 kb on + strand, within GFF1883 at 746.391 kb on + strand, within GFF1883 at 746.392 kb on - strand, within GFF1883 at 746.392 kb on - strand, within GFF1883 at 746.392 kb on - strand, within GFF1883 at 746.392 kb on - strand, within GFF1883 at 746.392 kb on - strand, within GFF1883 at 746.392 kb on - strand, within GFF1883
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 743,869 + +0.8 743,887 + +0.7 743,888 - +0.4 743,923 + +0.2 743,923 + -0.5 743,923 + -0.0 743,924 - -1.2 743,924 - +0.2 743,924 - +1.2 743,924 - +0.3 743,924 - -0.3 743,924 - -0.2 743,924 - +0.2 743,924 - -0.1 743,924 - +2.2 743,924 - -0.1 743,924 - -0.3 744,170 + GFF1880 0.29 +1.5 744,171 - GFF1880 0.29 -0.5 744,171 - GFF1880 0.29 +0.1 744,356 + GFF1880 0.58 -0.7 744,357 - GFF1880 0.58 +1.4 744,357 - GFF1880 0.58 +0.9 744,357 - GFF1880 0.58 -0.1 744,374 + GFF1880 0.61 -0.3 744,374 + GFF1880 0.61 -0.2 744,374 + GFF1880 0.61 -0.2 744,375 - GFF1880 0.61 -0.1 744,375 - GFF1880 0.61 -0.1 744,593 + +0.4 744,594 - +0.9 744,594 - +1.5 744,653 + +0.4 744,698 + +0.0 744,698 + -0.2 744,698 + +0.3 744,698 + -0.4 744,699 - +0.3 744,699 - +0.5 744,699 - +0.6 744,699 - +0.6 744,699 - -0.1 744,699 - +0.1 744,699 - -0.5 744,749 + GFF1881 0.14 +0.0 744,749 + GFF1881 0.14 +1.2 744,749 + GFF1881 0.14 +0.8 744,749 + GFF1881 0.14 -0.5 744,749 + GFF1881 0.14 +0.2 744,749 + GFF1881 0.14 +0.4 744,750 - GFF1881 0.14 +0.2 744,750 - GFF1881 0.14 -0.1 744,750 - GFF1881 0.14 +1.3 744,750 - GFF1881 0.14 -0.9 744,779 + GFF1881 0.18 -0.5 744,809 + GFF1881 0.22 -0.1 744,809 + GFF1881 0.22 +0.4 744,809 + GFF1881 0.22 +0.1 744,810 - GFF1881 0.22 -0.1 744,810 - GFF1881 0.22 -0.8 744,810 - GFF1881 0.22 -0.6 744,845 + GFF1881 0.26 -0.2 744,846 - GFF1881 0.26 -0.7 744,846 - GFF1881 0.26 -0.8 745,025 + GFF1881 0.49 -0.2 745,026 - GFF1881 0.49 -0.4 745,046 + GFF1881 0.52 -0.1 745,046 + GFF1881 0.52 +0.5 745,047 - GFF1881 0.52 -0.4 745,047 - GFF1881 0.52 -0.0 745,047 - GFF1881 0.52 +1.0 745,091 + GFF1881 0.57 -1.0 745,091 + GFF1881 0.57 +0.1 745,091 + GFF1881 0.57 -1.0 745,092 - GFF1881 0.57 -0.3 745,092 - GFF1881 0.57 +0.7 745,092 - GFF1881 0.57 +1.4 745,092 - GFF1881 0.57 -0.2 745,178 + GFF1881 0.68 +0.8 745,215 - GFF1881 0.73 +0.2 745,215 - GFF1881 0.73 -0.3 745,215 - GFF1881 0.73 +0.5 745,232 + GFF1881 0.75 -0.0 745,232 + GFF1881 0.75 +0.4 745,233 - GFF1881 0.75 -0.1 745,233 - GFF1881 0.75 +0.1 745,250 + GFF1881 0.77 +0.2 745,335 + GFF1881 0.88 +0.1 745,335 + GFF1881 0.88 -0.4 745,335 + GFF1881 0.88 -0.1 745,335 + GFF1881 0.88 -0.1 745,335 + GFF1881 0.88 +0.6 745,335 + GFF1881 0.88 -0.6 745,335 + GFF1881 0.88 -0.9 745,335 + GFF1881 0.88 -0.2 745,336 - GFF1881 0.88 +0.4 745,336 - GFF1881 0.88 +1.3 745,336 - GFF1881 0.88 -0.2 745,336 - GFF1881 0.88 +0.0 745,336 - GFF1881 0.88 +0.2 745,450 + -1.4 745,450 + -4.1 745,450 + -1.7 745,451 - -3.2 745,451 - +0.0 745,575 - GFF1882 0.19 -3.1 745,575 - GFF1882 0.19 -1.7 745,634 + GFF1882 0.27 -1.8 745,635 - GFF1882 0.27 -2.2 745,692 - GFF1882 0.35 -3.1 745,692 - GFF1882 0.35 -2.0 745,692 - GFF1882 0.35 -3.2 745,692 - GFF1882 0.35 -1.7 745,692 - GFF1882 0.35 -2.4 745,763 + GFF1882 0.45 -2.8 745,763 + GFF1882 0.45 -3.2 745,764 - GFF1882 0.45 -2.4 746,009 + GFF1882 0.79 -1.9 746,009 + GFF1882 0.79 -1.4 746,009 + GFF1882 0.79 -0.7 746,009 + GFF1882 0.79 -0.4 746,009 + GFF1882 0.79 -0.7 746,009 + GFF1882 0.79 -3.4 746,009 + GFF1882 0.79 -2.5 746,009 + GFF1882 0.79 -2.0 746,009 + GFF1882 0.79 -1.7 746,010 - GFF1882 0.80 -2.8 746,010 - GFF1882 0.80 -2.9 746,010 - GFF1882 0.80 -3.5 746,010 - GFF1882 0.80 -1.8 746,010 - GFF1882 0.80 -4.2 746,010 - GFF1882 0.80 -2.2 746,010 - GFF1882 0.80 -0.9 746,072 + GFF1882 0.88 -3.0 746,072 + GFF1882 0.88 -1.7 746,072 + GFF1882 0.88 -1.7 746,073 - GFF1882 0.88 -2.5 746,129 + -1.0 746,130 - -2.1 746,141 + -2.0 746,142 - -1.3 746,142 - -2.5 746,268 + GFF1883 0.14 +0.4 746,268 + GFF1883 0.14 +0.1 746,268 + GFF1883 0.14 +0.3 746,268 + GFF1883 0.14 +1.0 746,268 + GFF1883 0.14 -0.0 746,268 + GFF1883 0.14 -0.0 746,268 + GFF1883 0.14 +0.0 746,268 + GFF1883 0.14 -0.4 746,268 + GFF1883 0.14 -0.5 746,268 + GFF1883 0.14 +0.5 746,268 + GFF1883 0.14 +0.3 746,268 + GFF1883 0.14 +0.0 746,268 + GFF1883 0.14 +0.4 746,268 + GFF1883 0.14 -0.5 746,269 - GFF1883 0.15 -0.3 746,269 - GFF1883 0.15 -0.2 746,269 - GFF1883 0.15 -0.5 746,269 - GFF1883 0.15 -0.3 746,269 - GFF1883 0.15 +0.3 746,269 - GFF1883 0.15 +0.9 746,269 - GFF1883 0.15 +0.6 746,269 - GFF1883 0.15 +0.2 746,269 - GFF1883 0.15 +1.6 746,269 - GFF1883 0.15 +0.3 746,269 - GFF1883 0.15 +0.4 746,269 - GFF1883 0.15 +0.1 746,269 - GFF1883 0.15 -0.5 746,269 - GFF1883 0.15 +0.5 746,269 - GFF1883 0.15 -0.2 746,269 - GFF1883 0.15 +0.0 746,269 - GFF1883 0.15 +0.4 746,269 - GFF1883 0.15 +0.0 746,269 - GFF1883 0.15 -0.2 746,391 + GFF1883 0.32 -1.2 746,391 + GFF1883 0.32 -0.1 746,391 + GFF1883 0.32 -0.5 746,391 + GFF1883 0.32 +0.5 746,391 + GFF1883 0.32 +0.5 746,392 - GFF1883 0.33 -0.1 746,392 - GFF1883 0.33 +0.1 746,392 - GFF1883 0.33 -0.3 746,392 - GFF1883 0.33 -0.2 746,392 - GFF1883 0.33 +0.3 746,392 - GFF1883 0.33 -0.5
Or see this region's nucleotide sequence