Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1583

Experiment: Ying_AminoAcid20 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep B; time point 1
439,212	+				-0.2
439,285	-				+0.2
439,420	-		GFF1583	0.23	+0.4
439,717	-		GFF1583	0.55	+1.1
439,717	-		GFF1583	0.55	-0.1
439,806	+		GFF1583	0.65	-0.2
440,179	+				+0.1
440,180	-				+0.7
440,180	-				-0.4
440,212	+				+0.2
440,641	+		GFF1584	0.37	-0.5
440,641	+		GFF1584	0.37	-0.2
440,641	+		GFF1584	0.37	-0.0
440,641	+		GFF1584	0.37	+0.3
440,642	-		GFF1584	0.37	+0.2
440,677	+		GFF1584	0.41	+0.9
440,678	-		GFF1584	0.41	-0.2
440,678	-		GFF1584	0.41	-1.0
440,678	-		GFF1584	0.41	-0.9