Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1525 and GFF1526 are separated by 38 nucleotides GFF1526 and GFF1527 overlap by 4 nucleotides GFF1527 and GFF1528 overlap by 4 nucleotides
GFF1525 - Benzoylformate decarboxylase (EC 4.1.1.7), at 379,949 to 381,496
GFF1525
GFF1526 - Aldehyde dehydrogenase (EC 1.2.1.3), at 381,535 to 382,986
GFF1526
GFF1527 - Tricarboxylate transport protein TctC, at 382,983 to 383,945
GFF1527
GFF1528 - hypothetical protein, at 383,942 to 384,085
GFF1528
Position (kb) 381
382
383 Strain fitness (log2 ratio) -1
0
1
2 at 380.692 kb on - strand, within GFF1525 at 380.692 kb on - strand, within GFF1525 at 381.153 kb on + strand, within GFF1525 at 381.154 kb on - strand, within GFF1525 at 381.192 kb on + strand, within GFF1525 at 381.192 kb on + strand, within GFF1525 at 381.193 kb on - strand, within GFF1525 at 381.270 kb on + strand, within GFF1525 at 381.397 kb on - strand at 381.397 kb on - strand at 381.492 kb on + strand at 381.492 kb on + strand at 381.545 kb on + strand at 381.546 kb on - strand at 381.546 kb on - strand at 381.575 kb on + strand at 381.605 kb on + strand at 381.740 kb on + strand, within GFF1526 at 381.741 kb on - strand, within GFF1526 at 381.893 kb on + strand, within GFF1526 at 381.893 kb on + strand, within GFF1526 at 381.893 kb on + strand, within GFF1526 at 382.568 kb on + strand, within GFF1526 at 382.632 kb on - strand, within GFF1526 at 383.485 kb on + strand, within GFF1527 at 383.486 kb on - strand, within GFF1527 at 383.486 kb on - strand, within GFF1527 at 383.639 kb on - strand, within GFF1527 at 383.839 kb on + strand, within GFF1527 at 383.872 kb on + strand at 383.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 380,692 - GFF1525 0.48 -0.1 380,692 - GFF1525 0.48 -0.3 381,153 + GFF1525 0.78 +0.2 381,154 - GFF1525 0.78 +1.4 381,192 + GFF1525 0.80 -0.2 381,192 + GFF1525 0.80 -0.1 381,193 - GFF1525 0.80 +0.4 381,270 + GFF1525 0.85 -0.1 381,397 - +0.1 381,397 - -1.0 381,492 + +0.5 381,492 + -1.0 381,545 + -0.3 381,546 - +2.1 381,546 - -0.3 381,575 + -0.7 381,605 + +0.4 381,740 + GFF1526 0.14 -0.8 381,741 - GFF1526 0.14 -0.5 381,893 + GFF1526 0.25 -1.0 381,893 + GFF1526 0.25 -0.0 381,893 + GFF1526 0.25 -0.5 382,568 + GFF1526 0.71 -0.0 382,632 - GFF1526 0.76 -0.2 383,485 + GFF1527 0.52 -0.7 383,486 - GFF1527 0.52 -0.0 383,486 - GFF1527 0.52 -0.3 383,639 - GFF1527 0.68 +0.5 383,839 + GFF1527 0.89 +0.5 383,872 + +0.1 383,873 - -0.1
Or see this region's nucleotide sequence