Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1394 and GFF1395 are separated by 22 nucleotides GFF1395 and GFF1396 are separated by 3 nucleotides
GFF1394 - ABC transporter, fused ATPase and inner membrane subunits (EC 3.6.3.27), at 249,781 to 251,574
GFF1394
GFF1395 - HlyD family secretion protein, at 251,597 to 253,018
GFF1395
GFF1396 - cyclolysin secretion ATP-binding protein, at 253,022 to 255,229
GFF1396
Position (kb) 251
252
253
254 Strain fitness (log2 ratio) -2
-1
0
1 at 250.621 kb on + strand, within GFF1394 at 250.621 kb on + strand, within GFF1394 at 250.622 kb on - strand, within GFF1394 at 250.622 kb on - strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.813 kb on + strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 250.814 kb on - strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.143 kb on + strand, within GFF1394 at 251.144 kb on - strand, within GFF1394 at 251.144 kb on - strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.200 kb on + strand, within GFF1394 at 251.201 kb on - strand, within GFF1394 at 251.201 kb on - strand, within GFF1394 at 251.410 kb on + strand at 251.411 kb on - strand at 251.411 kb on - strand at 251.649 kb on + strand at 251.747 kb on - strand, within GFF1395 at 251.770 kb on - strand, within GFF1395 at 251.841 kb on + strand, within GFF1395 at 251.850 kb on + strand, within GFF1395 at 251.930 kb on + strand, within GFF1395 at 251.930 kb on + strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 251.931 kb on - strand, within GFF1395 at 252.273 kb on + strand, within GFF1395 at 252.976 kb on + strand at 253.023 kb on + strand at 253.024 kb on - strand at 253.233 kb on + strand at 253.590 kb on + strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.591 kb on - strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.965 kb on + strand, within GFF1396 at 253.966 kb on - strand, within GFF1396
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 250,621 + GFF1394 0.47 +0.0 250,621 + GFF1394 0.47 -0.7 250,622 - GFF1394 0.47 +0.1 250,622 - GFF1394 0.47 +0.5 250,813 + GFF1394 0.58 +0.4 250,813 + GFF1394 0.58 -0.2 250,813 + GFF1394 0.58 +0.3 250,813 + GFF1394 0.58 +0.6 250,813 + GFF1394 0.58 +0.2 250,813 + GFF1394 0.58 -0.2 250,813 + GFF1394 0.58 -0.2 250,814 - GFF1394 0.58 -0.0 250,814 - GFF1394 0.58 +0.2 250,814 - GFF1394 0.58 -0.3 250,814 - GFF1394 0.58 +0.4 250,814 - GFF1394 0.58 +0.2 251,143 + GFF1394 0.76 -0.6 251,143 + GFF1394 0.76 +0.1 251,143 + GFF1394 0.76 +1.1 251,144 - GFF1394 0.76 -0.3 251,144 - GFF1394 0.76 -0.7 251,200 + GFF1394 0.79 +0.3 251,200 + GFF1394 0.79 -0.8 251,200 + GFF1394 0.79 -0.2 251,201 - GFF1394 0.79 +0.4 251,201 - GFF1394 0.79 +0.6 251,410 + -0.4 251,411 - -0.2 251,411 - +0.2 251,649 + +0.2 251,747 - GFF1395 0.11 -0.4 251,770 - GFF1395 0.12 -0.4 251,841 + GFF1395 0.17 +1.0 251,850 + GFF1395 0.18 +0.0 251,930 + GFF1395 0.23 -0.0 251,930 + GFF1395 0.23 -1.0 251,931 - GFF1395 0.23 -0.2 251,931 - GFF1395 0.23 -2.3 251,931 - GFF1395 0.23 +0.1 252,273 + GFF1395 0.48 -0.8 252,976 + -0.9 253,023 + -0.6 253,024 - -0.2 253,233 + -0.1 253,590 + GFF1396 0.26 +0.3 253,591 - GFF1396 0.26 +0.5 253,591 - GFF1396 0.26 -0.2 253,591 - GFF1396 0.26 +0.5 253,965 + GFF1396 0.43 -0.0 253,965 + GFF1396 0.43 -0.0 253,966 - GFF1396 0.43 +0.4
Or see this region's nucleotide sequence