Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1222

Experiment: Ying_AminoAcid20 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1220 and GFF1221 are separated by 17 nucleotidesGFF1221 and GFF1222 overlap by 4 nucleotidesGFF1222 and GFF1223 are separated by 19 nucleotidesGFF1223 and GFF1224 are separated by 110 nucleotidesGFF1224 and GFF1225 are separated by 41 nucleotides GFF1220 - Pantoate--beta-alanine ligase (EC 6.3.2.1), at 84,920 to 85,771 GFF1220 GFF1221 - hypothetical protein, at 85,789 to 86,031 GFF1221 GFF1222 - Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94), at 86,028 to 87,050 GFF1222 GFF1223 - Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state), at 87,070 to 87,528 GFF1223 GFF1224 - Glutaredoxin 3 (Grx3), at 87,639 to 87,896 GFF1224 GFF1225 - FIG136845: Rhodanese-related sulfurtransferase, at 87,938 to 88,348 GFF1225 Position (kb) 86 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.030 kb on - strandat 86.179 kb on + strand, within GFF1222at 86.179 kb on + strand, within GFF1222at 86.179 kb on + strand, within GFF1222at 86.180 kb on - strand, within GFF1222at 86.180 kb on - strand, within GFF1222at 86.503 kb on + strand, within GFF1222at 86.503 kb on + strand, within GFF1222at 86.503 kb on + strand, within GFF1222at 86.503 kb on + strand, within GFF1222at 86.899 kb on + strand, within GFF1222at 86.899 kb on + strand, within GFF1222at 86.899 kb on + strand, within GFF1222at 87.071 kb on + strandat 87.071 kb on + strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.072 kb on - strandat 87.125 kb on + strand, within GFF1223at 87.125 kb on + strand, within GFF1223at 87.125 kb on + strand, within GFF1223at 87.125 kb on + strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.126 kb on - strand, within GFF1223at 87.209 kb on + strand, within GFF1223at 87.209 kb on + strand, within GFF1223at 87.210 kb on - strand, within GFF1223at 87.215 kb on + strand, within GFF1223at 87.215 kb on + strand, within GFF1223at 87.215 kb on + strand, within GFF1223at 87.368 kb on + strand, within GFF1223at 87.368 kb on + strand, within GFF1223at 87.368 kb on + strand, within GFF1223at 87.368 kb on + strand, within GFF1223at 87.368 kb on + strand, within GFF1223at 87.369 kb on - strand, within GFF1223at 87.369 kb on - strand, within GFF1223at 87.369 kb on - strand, within GFF1223at 87.485 kb on + strandat 87.485 kb on + strandat 87.486 kb on - strandat 87.486 kb on - strandat 87.486 kb on - strandat 87.486 kb on - strandat 87.579 kb on + strandat 87.609 kb on + strandat 87.610 kb on - strandat 87.610 kb on - strandat 87.610 kb on - strandat 87.610 kb on - strandat 87.610 kb on - strandat 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.796 kb on + strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.797 kb on - strand, within GFF1224at 87.856 kb on + strand, within GFF1224at 87.856 kb on + strand, within GFF1224at 87.856 kb on + strand, within GFF1224at 87.856 kb on + strand, within GFF1224at 87.857 kb on - strand, within GFF1224at 87.857 kb on - strand, within GFF1224at 87.866 kb on - strand, within GFF1224at 88.011 kb on + strand, within GFF1225

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1
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86,030 - +2.2
86,179 + GFF1222 0.15 -2.4
86,179 + GFF1222 0.15 -2.6
86,179 + GFF1222 0.15 -0.8
86,180 - GFF1222 0.15 -3.4
86,180 - GFF1222 0.15 -1.0
86,503 + GFF1222 0.46 -3.4
86,503 + GFF1222 0.46 -3.6
86,503 + GFF1222 0.46 -1.9
86,503 + GFF1222 0.46 -3.2
86,899 + GFF1222 0.85 -1.3
86,899 + GFF1222 0.85 -2.5
86,899 + GFF1222 0.85 -3.4
87,071 + -0.4
87,071 + +0.3
87,072 - +0.4
87,072 - -0.2
87,072 - -0.8
87,072 - -0.7
87,072 - -3.1
87,072 - +0.4
87,072 - -0.3
87,072 - +0.1
87,072 - -0.0
87,125 + GFF1223 0.12 -1.0
87,125 + GFF1223 0.12 +0.2
87,125 + GFF1223 0.12 -0.3
87,125 + GFF1223 0.12 +0.0
87,126 - GFF1223 0.12 -0.6
87,126 - GFF1223 0.12 -2.0
87,126 - GFF1223 0.12 -1.9
87,126 - GFF1223 0.12 +0.1
87,126 - GFF1223 0.12 -2.0
87,126 - GFF1223 0.12 -2.4
87,126 - GFF1223 0.12 -0.9
87,126 - GFF1223 0.12 -0.3
87,126 - GFF1223 0.12 -2.2
87,126 - GFF1223 0.12 -0.8
87,126 - GFF1223 0.12 -0.6
87,126 - GFF1223 0.12 -0.7
87,209 + GFF1223 0.30 +0.1
87,209 + GFF1223 0.30 -0.9
87,210 - GFF1223 0.31 -1.9
87,215 + GFF1223 0.32 -0.8
87,215 + GFF1223 0.32 -0.8
87,215 + GFF1223 0.32 +1.0
87,368 + GFF1223 0.65 -0.0
87,368 + GFF1223 0.65 -0.0
87,368 + GFF1223 0.65 -0.6
87,368 + GFF1223 0.65 -0.5
87,368 + GFF1223 0.65 -2.3
87,369 - GFF1223 0.65 -0.5
87,369 - GFF1223 0.65 -0.9
87,369 - GFF1223 0.65 -0.0
87,485 + -0.8
87,485 + -0.5
87,486 - -0.5
87,486 - -0.7
87,486 - +1.5
87,486 - -1.5
87,579 + -1.3
87,609 + -0.9
87,610 - +0.1
87,610 - -0.9
87,610 - -0.1
87,610 - -0.1
87,610 - -0.2
87,796 + GFF1224 0.61 +0.4
87,796 + GFF1224 0.61 -0.1
87,796 + GFF1224 0.61 +0.1
87,796 + GFF1224 0.61 -1.2
87,796 + GFF1224 0.61 +0.1
87,796 + GFF1224 0.61 +0.2
87,796 + GFF1224 0.61 -0.4
87,796 + GFF1224 0.61 -0.9
87,796 + GFF1224 0.61 +0.2
87,797 - GFF1224 0.61 +0.2
87,797 - GFF1224 0.61 -0.0
87,797 - GFF1224 0.61 +0.1
87,797 - GFF1224 0.61 +0.4
87,797 - GFF1224 0.61 +0.4
87,797 - GFF1224 0.61 -0.1
87,797 - GFF1224 0.61 -0.9
87,797 - GFF1224 0.61 +0.5
87,797 - GFF1224 0.61 -0.5
87,797 - GFF1224 0.61 +0.5
87,856 + GFF1224 0.84 +0.8
87,856 + GFF1224 0.84 -0.0
87,856 + GFF1224 0.84 -0.0
87,856 + GFF1224 0.84 +0.4
87,857 - GFF1224 0.84 +0.0
87,857 - GFF1224 0.84 +0.2
87,866 - GFF1224 0.88 +0.1
88,011 + GFF1225 0.18 -0.5

Or see this region's nucleotide sequence