Experiment: Ying_AminoAcid20 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF112 and GFF113 are separated by 1 nucleotides GFF113 and GFF114 overlap by 1 nucleotides GFF114 and GFF115 are separated by 46 nucleotides
GFF112 - Ku domain protein, at 121,637 to 122,470
GFF112
GFF113 - Membrane protein, putative, at 122,472 to 123,383
GFF113
GFF114 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 123,383 to 124,240
GFF114
GFF115 - Phosphoenolpyruvate carboxylase (EC 4.1.1.31), at 124,287 to 127,127
GFF115
Position (kb) 123
124
125 Strain fitness (log2 ratio) -1
0
1
2 at 122.644 kb on + strand, within GFF113 at 122.644 kb on + strand, within GFF113 at 122.645 kb on - strand, within GFF113 at 122.818 kb on + strand, within GFF113 at 122.884 kb on + strand, within GFF113 at 122.884 kb on + strand, within GFF113 at 122.885 kb on - strand, within GFF113 at 122.885 kb on - strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.091 kb on + strand, within GFF113 at 123.092 kb on - strand, within GFF113 at 123.092 kb on - strand, within GFF113 at 123.092 kb on - strand, within GFF113 at 123.092 kb on - strand, within GFF113 at 123.092 kb on - strand, within GFF113 at 123.280 kb on + strand, within GFF113 at 123.280 kb on + strand, within GFF113 at 123.280 kb on + strand, within GFF113 at 123.281 kb on - strand, within GFF113 at 123.281 kb on - strand, within GFF113 at 123.281 kb on - strand, within GFF113 at 123.281 kb on - strand, within GFF113 at 123.537 kb on + strand, within GFF114 at 123.537 kb on + strand, within GFF114 at 123.538 kb on - strand, within GFF114 at 123.546 kb on + strand, within GFF114 at 123.648 kb on + strand, within GFF114 at 123.739 kb on - strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.762 kb on + strand, within GFF114 at 123.763 kb on - strand, within GFF114 at 123.763 kb on - strand, within GFF114 at 123.763 kb on - strand, within GFF114 at 123.813 kb on + strand, within GFF114 at 123.814 kb on - strand, within GFF114 at 123.814 kb on - strand, within GFF114 at 123.858 kb on + strand, within GFF114 at 123.858 kb on + strand, within GFF114 at 123.858 kb on + strand, within GFF114 at 123.859 kb on - strand, within GFF114 at 123.859 kb on - strand, within GFF114 at 123.859 kb on - strand, within GFF114 at 123.876 kb on + strand, within GFF114 at 123.876 kb on + strand, within GFF114 at 123.876 kb on + strand, within GFF114 at 123.877 kb on - strand, within GFF114 at 123.877 kb on - strand, within GFF114 at 124.056 kb on + strand, within GFF114 at 124.251 kb on + strand at 124.252 kb on - strand at 124.432 kb on + strand at 124.433 kb on - strand at 124.594 kb on + strand, within GFF115 at 124.595 kb on - strand, within GFF115 at 124.765 kb on + strand, within GFF115 at 124.919 kb on - strand, within GFF115 at 124.919 kb on - strand, within GFF115 at 124.919 kb on - strand, within GFF115 at 124.942 kb on + strand, within GFF115 at 124.943 kb on - strand, within GFF115 at 124.943 kb on - strand, within GFF115 at 125.101 kb on + strand, within GFF115 at 125.101 kb on + strand, within GFF115 at 125.101 kb on + strand, within GFF115 at 125.185 kb on + strand, within GFF115 at 125.185 kb on + strand, within GFF115 at 125.185 kb on + strand, within GFF115 at 125.185 kb on + strand, within GFF115 at 125.186 kb on - strand, within GFF115
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep B; time point 1 remove 122,644 + GFF113 0.19 -0.4 122,644 + GFF113 0.19 +0.3 122,645 - GFF113 0.19 -0.0 122,818 + GFF113 0.38 -0.5 122,884 + GFF113 0.45 +2.2 122,884 + GFF113 0.45 -0.6 122,885 - GFF113 0.45 -0.4 122,885 - GFF113 0.45 +0.3 123,091 + GFF113 0.68 +0.2 123,091 + GFF113 0.68 +0.3 123,091 + GFF113 0.68 -0.9 123,091 + GFF113 0.68 -0.0 123,091 + GFF113 0.68 -0.5 123,091 + GFF113 0.68 -0.5 123,091 + GFF113 0.68 -0.3 123,091 + GFF113 0.68 -0.4 123,091 + GFF113 0.68 +0.2 123,092 - GFF113 0.68 -1.4 123,092 - GFF113 0.68 +0.2 123,092 - GFF113 0.68 -0.3 123,092 - GFF113 0.68 +0.3 123,092 - GFF113 0.68 -0.8 123,280 + GFF113 0.89 +0.0 123,280 + GFF113 0.89 +1.9 123,280 + GFF113 0.89 +0.1 123,281 - GFF113 0.89 +0.1 123,281 - GFF113 0.89 +0.4 123,281 - GFF113 0.89 +0.1 123,281 - GFF113 0.89 +0.0 123,537 + GFF114 0.18 +0.5 123,537 + GFF114 0.18 -1.3 123,538 - GFF114 0.18 -0.7 123,546 + GFF114 0.19 -0.5 123,648 + GFF114 0.31 +0.5 123,739 - GFF114 0.41 -0.7 123,762 + GFF114 0.44 +0.2 123,762 + GFF114 0.44 -0.2 123,762 + GFF114 0.44 -0.7 123,762 + GFF114 0.44 +0.5 123,762 + GFF114 0.44 -0.6 123,762 + GFF114 0.44 -0.3 123,763 - GFF114 0.44 -0.0 123,763 - GFF114 0.44 -1.3 123,763 - GFF114 0.44 +0.3 123,813 + GFF114 0.50 +0.5 123,814 - GFF114 0.50 -0.7 123,814 - GFF114 0.50 +0.8 123,858 + GFF114 0.55 -0.8 123,858 + GFF114 0.55 -0.2 123,858 + GFF114 0.55 +0.8 123,859 - GFF114 0.55 -0.1 123,859 - GFF114 0.55 -1.2 123,859 - GFF114 0.55 -0.5 123,876 + GFF114 0.57 -0.6 123,876 + GFF114 0.57 +0.8 123,876 + GFF114 0.57 +0.6 123,877 - GFF114 0.58 -1.0 123,877 - GFF114 0.58 -0.5 124,056 + GFF114 0.78 -0.9 124,251 + +0.2 124,252 - +0.9 124,432 + -0.7 124,433 - -0.0 124,594 + GFF115 0.11 -0.0 124,595 - GFF115 0.11 +1.8 124,765 + GFF115 0.17 -0.0 124,919 - GFF115 0.22 -0.0 124,919 - GFF115 0.22 +0.3 124,919 - GFF115 0.22 -0.5 124,942 + GFF115 0.23 +0.0 124,943 - GFF115 0.23 -0.2 124,943 - GFF115 0.23 -0.5 125,101 + GFF115 0.29 -0.0 125,101 + GFF115 0.29 -1.6 125,101 + GFF115 0.29 +0.2 125,185 + GFF115 0.32 -0.2 125,185 + GFF115 0.32 -0.5 125,185 + GFF115 0.32 -0.4 125,185 + GFF115 0.32 -0.9 125,186 - GFF115 0.32 +0.0
Or see this region's nucleotide sequence