Experiment: mixed community control; M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS14335 and cobF are separated by 72 nucleotides cobF and COO64_RS14345 overlap by 35 nucleotides COO64_RS14345 and COO64_RS14350 are separated by 52 nucleotides COO64_RS14350 and COO64_RS14355 are separated by 296 nucleotides
COO64_RS14335: COO64_RS14335 - OprD family porin, at 428,000 to 429,289
_RS14335
COO64_RS14340: cobF - precorrin-6A synthase (deacetylating), at 429,362 to 430,111
cobF
COO64_RS14345: COO64_RS14345 - glycosyltransferase, at 430,077 to 431,396
_RS14345
COO64_RS14350: COO64_RS14350 - response regulator, at 431,449 to 431,820
_RS14350
COO64_RS14355: COO64_RS14355 - response regulator, at 432,117 to 435,599
_RS14355
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 429.091 kb on + strand, within COO64_RS14335 at 429.092 kb on - strand, within COO64_RS14335 at 429.092 kb on - strand, within COO64_RS14335 at 429.092 kb on - strand, within COO64_RS14335 at 429.152 kb on + strand, within COO64_RS14335 at 429.152 kb on + strand, within COO64_RS14335 at 429.153 kb on - strand, within COO64_RS14335 at 429.199 kb on + strand at 429.200 kb on - strand at 429.209 kb on + strand at 429.209 kb on + strand at 429.221 kb on + strand at 429.222 kb on - strand at 429.222 kb on - strand at 429.230 kb on + strand at 429.230 kb on + strand at 429.231 kb on - strand at 429.231 kb on - strand at 429.231 kb on - strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.269 kb on + strand at 429.270 kb on - strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.297 kb on + strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.298 kb on - strand at 429.327 kb on + strand at 429.327 kb on + strand at 429.328 kb on - strand at 429.328 kb on - strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.329 kb on + strand at 429.330 kb on - strand at 429.590 kb on + strand, within cobF at 429.591 kb on - strand, within cobF at 429.591 kb on - strand, within cobF at 429.635 kb on + strand, within cobF at 429.635 kb on + strand, within cobF at 429.635 kb on + strand, within cobF at 429.636 kb on - strand, within cobF at 429.636 kb on - strand, within cobF at 429.636 kb on - strand, within cobF at 429.711 kb on - strand, within cobF at 429.711 kb on - strand, within cobF at 429.742 kb on - strand, within cobF at 429.836 kb on - strand, within cobF at 429.962 kb on + strand, within cobF at 429.962 kb on + strand, within cobF at 429.962 kb on + strand, within cobF at 429.962 kb on + strand, within cobF at 429.962 kb on + strand, within cobF at 429.963 kb on - strand, within cobF at 429.974 kb on + strand, within cobF at 430.088 kb on + strand at 430.088 kb on + strand at 430.088 kb on + strand at 430.088 kb on + strand at 430.088 kb on + strand at 430.088 kb on + strand at 430.089 kb on - strand at 430.089 kb on - strand at 430.089 kb on - strand at 430.089 kb on - strand at 430.089 kb on - strand at 430.089 kb on - strand at 430.147 kb on + strand at 430.148 kb on - strand at 430.148 kb on - strand at 430.340 kb on - strand, within COO64_RS14345 at 430.340 kb on - strand, within COO64_RS14345 at 430.473 kb on - strand, within COO64_RS14345 at 430.589 kb on + strand, within COO64_RS14345 at 430.590 kb on - strand, within COO64_RS14345 at 430.618 kb on + strand, within COO64_RS14345 at 430.618 kb on + strand, within COO64_RS14345 at 430.618 kb on + strand, within COO64_RS14345 at 430.618 kb on + strand, within COO64_RS14345 at 430.619 kb on - strand, within COO64_RS14345 at 430.619 kb on - strand, within COO64_RS14345 at 430.627 kb on + strand, within COO64_RS14345 at 430.627 kb on + strand, within COO64_RS14345 at 430.628 kb on - strand, within COO64_RS14345 at 430.628 kb on - strand, within COO64_RS14345 at 430.628 kb on - strand, within COO64_RS14345 at 430.628 kb on - strand, within COO64_RS14345 at 430.631 kb on + strand, within COO64_RS14345 at 430.631 kb on + strand, within COO64_RS14345 at 430.631 kb on + strand, within COO64_RS14345 at 430.631 kb on + strand, within COO64_RS14345 at 430.632 kb on - strand, within COO64_RS14345 at 430.632 kb on - strand, within COO64_RS14345 at 430.632 kb on - strand, within COO64_RS14345 at 430.632 kb on - strand, within COO64_RS14345 at 430.632 kb on - strand, within COO64_RS14345 at 430.891 kb on + strand, within COO64_RS14345 at 430.891 kb on + strand, within COO64_RS14345 at 430.891 kb on + strand, within COO64_RS14345 at 430.892 kb on - strand, within COO64_RS14345 at 430.892 kb on - strand, within COO64_RS14345 at 431.273 kb on + strand at 431.274 kb on - strand at 431.359 kb on + strand at 431.359 kb on + strand at 431.359 kb on + strand at 431.360 kb on - strand at 431.360 kb on - strand at 431.360 kb on - strand at 431.364 kb on + strand at 431.364 kb on + strand at 431.364 kb on + strand at 431.365 kb on - strand at 431.390 kb on + strand at 431.390 kb on + strand at 431.426 kb on - strand at 431.428 kb on + strand at 431.429 kb on - strand at 431.450 kb on + strand at 431.450 kb on + strand at 431.450 kb on + strand at 431.451 kb on - strand at 431.451 kb on - strand at 431.623 kb on - strand, within COO64_RS14350 at 431.852 kb on + strand at 431.852 kb on + strand at 431.853 kb on - strand at 431.853 kb on - strand at 431.853 kb on - strand at 431.853 kb on - strand at 431.853 kb on - strand at 431.853 kb on - strand at 431.886 kb on + strand at 431.895 kb on + strand at 431.918 kb on + strand at 431.918 kb on + strand at 431.927 kb on - strand at 431.956 kb on + strand at 431.956 kb on + strand at 432.006 kb on - strand at 432.146 kb on + strand at 432.146 kb on + strand at 432.147 kb on - strand at 432.147 kb on - strand at 432.156 kb on - strand at 432.234 kb on + strand at 432.234 kb on + strand at 432.235 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mixed community control; M9 remove 429,091 + COO64_RS14335 0.85 +0.6 429,092 - COO64_RS14335 0.85 -0.2 429,092 - COO64_RS14335 0.85 +0.2 429,092 - COO64_RS14335 0.85 +0.0 429,152 + COO64_RS14335 0.89 +1.1 429,152 + COO64_RS14335 0.89 +0.3 429,153 - COO64_RS14335 0.89 +1.1 429,199 + -0.2 429,200 - -0.4 429,209 + +0.3 429,209 + -0.5 429,221 + -0.1 429,222 - -0.5 429,222 - -0.5 429,230 + -1.2 429,230 + -0.3 429,231 - +0.1 429,231 - -1.4 429,231 - -1.7 429,269 + +1.4 429,269 + -0.3 429,269 + +0.4 429,269 + +0.0 429,270 - -0.3 429,297 + +0.8 429,297 + -0.6 429,297 + -0.7 429,297 + +0.1 429,297 + -0.2 429,297 + -0.8 429,297 + +0.7 429,298 - -0.4 429,298 - +0.8 429,298 - +0.9 429,298 - -1.0 429,298 - +0.4 429,298 - -0.5 429,298 - +0.7 429,298 - -1.0 429,327 + -0.9 429,327 + +0.8 429,328 - -0.5 429,328 - +0.2 429,329 + -0.4 429,329 + -0.1 429,329 + +1.0 429,330 - -1.2 429,590 + cobF COO64_RS14340 0.30 +0.2 429,591 - cobF COO64_RS14340 0.31 -0.2 429,591 - cobF COO64_RS14340 0.31 +0.2 429,635 + cobF COO64_RS14340 0.36 +0.3 429,635 + cobF COO64_RS14340 0.36 +0.3 429,635 + cobF COO64_RS14340 0.36 +0.7 429,636 - cobF COO64_RS14340 0.37 +1.5 429,636 - cobF COO64_RS14340 0.37 -0.0 429,636 - cobF COO64_RS14340 0.37 +0.3 429,711 - cobF COO64_RS14340 0.47 -0.5 429,711 - cobF COO64_RS14340 0.47 -0.1 429,742 - cobF COO64_RS14340 0.51 -0.5 429,836 - cobF COO64_RS14340 0.63 -0.2 429,962 + cobF COO64_RS14340 0.80 +1.7 429,962 + cobF COO64_RS14340 0.80 -0.7 429,962 + cobF COO64_RS14340 0.80 -1.1 429,962 + cobF COO64_RS14340 0.80 +0.5 429,962 + cobF COO64_RS14340 0.80 +0.6 429,963 - cobF COO64_RS14340 0.80 -0.7 429,974 + cobF COO64_RS14340 0.82 +0.1 430,088 + -1.4 430,088 + +0.1 430,088 + -0.2 430,088 + -0.7 430,088 + -1.4 430,088 + -0.7 430,089 - -0.6 430,089 - -1.1 430,089 - -0.8 430,089 - +0.4 430,089 - -0.6 430,089 - +0.2 430,147 + +0.2 430,148 - +1.1 430,148 - -1.0 430,340 - COO64_RS14345 0.20 +0.4 430,340 - COO64_RS14345 0.20 +0.8 430,473 - COO64_RS14345 0.30 +0.7 430,589 + COO64_RS14345 0.39 -0.6 430,590 - COO64_RS14345 0.39 +1.1 430,618 + COO64_RS14345 0.41 -1.0 430,618 + COO64_RS14345 0.41 -1.8 430,618 + COO64_RS14345 0.41 +1.9 430,618 + COO64_RS14345 0.41 -0.6 430,619 - COO64_RS14345 0.41 -0.4 430,619 - COO64_RS14345 0.41 -0.5 430,627 + COO64_RS14345 0.42 -0.2 430,627 + COO64_RS14345 0.42 -0.4 430,628 - COO64_RS14345 0.42 -0.4 430,628 - COO64_RS14345 0.42 +0.1 430,628 - COO64_RS14345 0.42 +0.3 430,628 - COO64_RS14345 0.42 -1.1 430,631 + COO64_RS14345 0.42 -0.2 430,631 + COO64_RS14345 0.42 +1.5 430,631 + COO64_RS14345 0.42 +0.4 430,631 + COO64_RS14345 0.42 +0.6 430,632 - COO64_RS14345 0.42 -0.6 430,632 - COO64_RS14345 0.42 +0.4 430,632 - COO64_RS14345 0.42 -0.5 430,632 - COO64_RS14345 0.42 +0.0 430,632 - COO64_RS14345 0.42 +3.3 430,891 + COO64_RS14345 0.62 +0.4 430,891 + COO64_RS14345 0.62 -0.4 430,891 + COO64_RS14345 0.62 +0.8 430,892 - COO64_RS14345 0.62 +1.8 430,892 - COO64_RS14345 0.62 +1.4 431,273 + -1.5 431,274 - +0.0 431,359 + -0.3 431,359 + +0.7 431,359 + -0.3 431,360 - +0.1 431,360 - +1.0 431,360 - +0.3 431,364 + +0.5 431,364 + -0.3 431,364 + +0.1 431,365 - +1.1 431,390 + +0.1 431,390 + +0.1 431,426 - -0.2 431,428 + +0.1 431,429 - -0.1 431,450 + -0.1 431,450 + -1.1 431,450 + +0.8 431,451 - +0.3 431,451 - -0.0 431,623 - COO64_RS14350 0.47 -0.2 431,852 + +0.4 431,852 + -0.5 431,853 - -0.2 431,853 - +0.4 431,853 - -1.7 431,853 - -0.9 431,853 - +0.0 431,853 - -1.1 431,886 + -1.1 431,895 + +0.2 431,918 + -1.7 431,918 + -0.1 431,927 - -2.3 431,956 + +1.1 431,956 + +0.2 432,006 - -0.1 432,146 + +0.3 432,146 + +0.4 432,147 - +0.4 432,147 - -0.3 432,156 - -0.2 432,234 + -0.0 432,234 + -1.5 432,235 - +0.0
Or see this region's nucleotide sequence