Experiment: mixed community control; M9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt COO64_RS02940 and COO64_RS02945 are separated by 81 nucleotides COO64_RS02945 and COO64_RS02950 are separated by 161 nucleotides COO64_RS02950 and COO64_RS02955 are separated by 2 nucleotides
COO64_RS02940: COO64_RS02940 - TonB-dependent receptor, at 60,900 to 63,593
_RS02940
COO64_RS02945: COO64_RS02945 - heme acquisition protein HasA, at 63,675 to 64,292
_RS02945
COO64_RS02950: COO64_RS02950 - type I secretion system permease/ATPase, at 64,454 to 66,223
_RS02950
COO64_RS02955: COO64_RS02955 - HlyD family type I secretion periplasmic adaptor subunit, at 66,226 to 67,560
_RS02955
Position (kb) 64
65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.510 kb on + strand at 63.510 kb on + strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.511 kb on - strand at 63.583 kb on - strand at 63.583 kb on - strand at 63.583 kb on - strand at 63.658 kb on + strand at 63.658 kb on + strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.659 kb on - strand at 63.662 kb on + strand at 63.662 kb on + strand at 63.662 kb on + strand at 63.663 kb on - strand at 63.663 kb on - strand at 63.663 kb on - strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.693 kb on + strand at 63.694 kb on - strand at 63.694 kb on - strand at 63.706 kb on - strand at 63.714 kb on + strand at 63.714 kb on + strand at 63.715 kb on - strand at 63.729 kb on + strand at 63.729 kb on + strand at 63.729 kb on + strand at 63.730 kb on - strand at 63.774 kb on + strand, within COO64_RS02945 at 63.775 kb on - strand, within COO64_RS02945 at 63.775 kb on - strand, within COO64_RS02945 at 63.823 kb on - strand, within COO64_RS02945 at 63.853 kb on - strand, within COO64_RS02945 at 63.853 kb on - strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.894 kb on + strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.895 kb on - strand, within COO64_RS02945 at 63.939 kb on + strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.940 kb on - strand, within COO64_RS02945 at 63.975 kb on + strand, within COO64_RS02945 at 63.976 kb on - strand, within COO64_RS02945 at 64.101 kb on + strand, within COO64_RS02945 at 64.101 kb on + strand, within COO64_RS02945 at 64.102 kb on - strand, within COO64_RS02945 at 64.488 kb on + strand at 64.488 kb on + strand at 64.488 kb on + strand at 64.489 kb on - strand at 64.489 kb on - strand at 64.489 kb on - strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.580 kb on + strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.581 kb on - strand at 64.595 kb on + strand at 64.595 kb on + strand at 64.595 kb on + strand at 64.596 kb on - strand at 64.767 kb on - strand, within COO64_RS02950 at 64.892 kb on + strand, within COO64_RS02950 at 65.063 kb on - strand, within COO64_RS02950 at 65.223 kb on + strand, within COO64_RS02950 at 65.224 kb on - strand, within COO64_RS02950 at 65.370 kb on - strand, within COO64_RS02950 at 65.370 kb on - strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.381 kb on + strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.382 kb on - strand, within COO64_RS02950 at 65.546 kb on - strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.589 kb on + strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.590 kb on - strand, within COO64_RS02950 at 65.684 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.825 kb on + strand, within COO64_RS02950 at 65.826 kb on - strand, within COO64_RS02950 at 65.826 kb on - strand, within COO64_RS02950 at 65.903 kb on + strand, within COO64_RS02950 at 65.983 kb on + strand, within COO64_RS02950 at 66.059 kb on - strand at 66.073 kb on - strand at 66.139 kb on + strand at 66.139 kb on + strand at 66.140 kb on - strand at 66.140 kb on - strand at 66.140 kb on - strand at 66.174 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.203 kb on + strand at 66.204 kb on - strand at 66.204 kb on - strand at 66.411 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.556 kb on + strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.557 kb on - strand, within COO64_RS02955 at 66.697 kb on - strand, within COO64_RS02955 at 66.865 kb on + strand, within COO64_RS02955 at 66.865 kb on + strand, within COO64_RS02955 at 66.866 kb on - strand, within COO64_RS02955 at 66.866 kb on - strand, within COO64_RS02955 at 66.904 kb on + strand, within COO64_RS02955 at 67.009 kb on + strand, within COO64_RS02955 at 67.010 kb on - strand, within COO64_RS02955 at 67.010 kb on - strand, within COO64_RS02955
Per-strain Table
Position Strand Gene LocusTag Fraction mixed community control; M9 remove 63,510 + -0.9 63,510 + -0.0 63,511 - +0.4 63,511 - -0.3 63,511 - +0.7 63,511 - +0.3 63,583 - -0.1 63,583 - -0.4 63,583 - -0.7 63,658 + -1.3 63,658 + +0.8 63,659 - -0.5 63,659 - -0.1 63,659 - -0.0 63,662 + +0.1 63,662 + -0.7 63,662 + +0.5 63,663 - -1.1 63,663 - -0.9 63,663 - +0.4 63,693 + -0.5 63,693 + -0.1 63,693 + -0.5 63,693 + -0.7 63,694 - -0.6 63,694 - +0.1 63,706 - +0.7 63,714 + -1.3 63,714 + -0.1 63,715 - -0.6 63,729 + -0.6 63,729 + -0.6 63,729 + -0.1 63,730 - -0.3 63,774 + COO64_RS02945 0.16 -1.3 63,775 - COO64_RS02945 0.16 +1.1 63,775 - COO64_RS02945 0.16 -0.9 63,823 - COO64_RS02945 0.24 -1.5 63,853 - COO64_RS02945 0.29 -2.0 63,853 - COO64_RS02945 0.29 +0.2 63,894 + COO64_RS02945 0.35 -0.1 63,894 + COO64_RS02945 0.35 -0.0 63,894 + COO64_RS02945 0.35 -0.4 63,894 + COO64_RS02945 0.35 +1.7 63,894 + COO64_RS02945 0.35 +0.3 63,894 + COO64_RS02945 0.35 +0.3 63,894 + COO64_RS02945 0.35 +0.2 63,894 + COO64_RS02945 0.35 +0.4 63,894 + COO64_RS02945 0.35 +0.4 63,894 + COO64_RS02945 0.35 +0.5 63,894 + COO64_RS02945 0.35 -0.8 63,894 + COO64_RS02945 0.35 -1.5 63,894 + COO64_RS02945 0.35 -0.7 63,894 + COO64_RS02945 0.35 +0.1 63,895 - COO64_RS02945 0.36 -0.6 63,895 - COO64_RS02945 0.36 -0.1 63,895 - COO64_RS02945 0.36 +0.1 63,895 - COO64_RS02945 0.36 -0.9 63,895 - COO64_RS02945 0.36 -1.1 63,895 - COO64_RS02945 0.36 +0.3 63,895 - COO64_RS02945 0.36 -0.1 63,895 - COO64_RS02945 0.36 -0.7 63,895 - COO64_RS02945 0.36 +0.8 63,895 - COO64_RS02945 0.36 -0.6 63,895 - COO64_RS02945 0.36 -1.9 63,895 - COO64_RS02945 0.36 +0.4 63,895 - COO64_RS02945 0.36 +0.1 63,895 - COO64_RS02945 0.36 +0.6 63,895 - COO64_RS02945 0.36 +0.2 63,895 - COO64_RS02945 0.36 +0.0 63,895 - COO64_RS02945 0.36 -0.7 63,939 + COO64_RS02945 0.43 +1.7 63,940 - COO64_RS02945 0.43 -0.1 63,940 - COO64_RS02945 0.43 -0.7 63,940 - COO64_RS02945 0.43 +1.1 63,940 - COO64_RS02945 0.43 -0.3 63,940 - COO64_RS02945 0.43 -0.5 63,975 + COO64_RS02945 0.49 +0.5 63,976 - COO64_RS02945 0.49 +0.9 64,101 + COO64_RS02945 0.69 +1.1 64,101 + COO64_RS02945 0.69 +0.9 64,102 - COO64_RS02945 0.69 -0.1 64,488 + +0.2 64,488 + -0.8 64,488 + -0.7 64,489 - +0.3 64,489 - -0.3 64,489 - -0.9 64,580 + -2.3 64,580 + -0.1 64,580 + +0.7 64,580 + -0.7 64,580 + -1.1 64,581 - -0.4 64,581 - +0.2 64,581 - -0.3 64,581 - +0.3 64,581 - +0.2 64,581 - -0.2 64,581 - -0.3 64,581 - +0.8 64,581 - +1.3 64,581 - -0.0 64,581 - -0.0 64,595 + -0.0 64,595 + +0.3 64,595 + +0.9 64,596 - -1.1 64,767 - COO64_RS02950 0.18 +0.4 64,892 + COO64_RS02950 0.25 -1.1 65,063 - COO64_RS02950 0.34 -1.0 65,223 + COO64_RS02950 0.43 +0.3 65,224 - COO64_RS02950 0.44 +0.3 65,370 - COO64_RS02950 0.52 -0.7 65,370 - COO64_RS02950 0.52 +2.2 65,381 + COO64_RS02950 0.52 -2.9 65,381 + COO64_RS02950 0.52 +0.7 65,381 + COO64_RS02950 0.52 -0.5 65,382 - COO64_RS02950 0.52 -0.9 65,382 - COO64_RS02950 0.52 +0.4 65,382 - COO64_RS02950 0.52 -0.7 65,382 - COO64_RS02950 0.52 +0.0 65,382 - COO64_RS02950 0.52 +0.6 65,546 - COO64_RS02950 0.62 -0.3 65,589 + COO64_RS02950 0.64 -0.9 65,589 + COO64_RS02950 0.64 -0.4 65,589 + COO64_RS02950 0.64 -1.3 65,590 - COO64_RS02950 0.64 -0.4 65,590 - COO64_RS02950 0.64 +0.1 65,590 - COO64_RS02950 0.64 -0.0 65,684 + COO64_RS02950 0.69 -0.5 65,825 + COO64_RS02950 0.77 +0.4 65,825 + COO64_RS02950 0.77 +0.1 65,825 + COO64_RS02950 0.77 -2.2 65,825 + COO64_RS02950 0.77 -0.3 65,825 + COO64_RS02950 0.77 -0.1 65,826 - COO64_RS02950 0.78 -0.0 65,826 - COO64_RS02950 0.78 +0.3 65,903 + COO64_RS02950 0.82 +0.3 65,983 + COO64_RS02950 0.86 +0.5 66,059 - +1.4 66,073 - -1.3 66,139 + +0.3 66,139 + -0.0 66,140 - +0.3 66,140 - -0.4 66,140 - -1.2 66,174 + +0.4 66,203 + -0.2 66,203 + -0.3 66,203 + -0.2 66,203 + +0.3 66,204 - -0.3 66,204 - -0.8 66,411 + COO64_RS02955 0.14 +0.1 66,556 + COO64_RS02955 0.25 -0.6 66,556 + COO64_RS02955 0.25 -0.9 66,556 + COO64_RS02955 0.25 +0.1 66,556 + COO64_RS02955 0.25 +0.4 66,557 - COO64_RS02955 0.25 +1.2 66,557 - COO64_RS02955 0.25 -0.4 66,557 - COO64_RS02955 0.25 -1.3 66,557 - COO64_RS02955 0.25 +0.3 66,557 - COO64_RS02955 0.25 +1.5 66,557 - COO64_RS02955 0.25 +0.0 66,557 - COO64_RS02955 0.25 +0.6 66,557 - COO64_RS02955 0.25 -0.6 66,557 - COO64_RS02955 0.25 -1.7 66,697 - COO64_RS02955 0.35 +0.9 66,865 + COO64_RS02955 0.48 -0.8 66,865 + COO64_RS02955 0.48 -0.7 66,866 - COO64_RS02955 0.48 -0.3 66,866 - COO64_RS02955 0.48 -0.7 66,904 + COO64_RS02955 0.51 -1.3 67,009 + COO64_RS02955 0.59 +0.2 67,010 - COO64_RS02955 0.59 +0.6 67,010 - COO64_RS02955 0.59 +0.3
Or see this region's nucleotide sequence