Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05064

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_05063 and BACOVA_05064 are separated by 72 nucleotidesBACOVA_05064 and BACOVA_05065 are separated by 18 nucleotidesBACOVA_05065 and BACOVA_05066 are separated by 0 nucleotides BACOVA_05063: BACOVA_05063 - hypothetical protein, at 536,533 to 537,450 _05063 BACOVA_05064: BACOVA_05064 - hypothetical protein, at 537,523 to 538,473 _05064 BACOVA_05065: BACOVA_05065 - putative shikimate dehydrogenase, at 538,492 to 539,244 _05065 BACOVA_05066: BACOVA_05066 - hypothetical protein, at 539,245 to 540,273 _05066 Position (kb) 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 536.638 kb on - strand, within BACOVA_05063at 536.680 kb on - strand, within BACOVA_05063at 536.684 kb on + strand, within BACOVA_05063at 536.701 kb on + strand, within BACOVA_05063at 536.709 kb on + strand, within BACOVA_05063at 536.710 kb on - strand, within BACOVA_05063at 536.724 kb on + strand, within BACOVA_05063at 536.730 kb on + strand, within BACOVA_05063at 536.730 kb on + strand, within BACOVA_05063at 536.730 kb on + strand, within BACOVA_05063at 536.730 kb on + strand, within BACOVA_05063at 536.731 kb on - strand, within BACOVA_05063at 536.731 kb on - strand, within BACOVA_05063at 536.732 kb on + strand, within BACOVA_05063at 536.736 kb on + strand, within BACOVA_05063at 536.737 kb on - strand, within BACOVA_05063at 536.760 kb on + strand, within BACOVA_05063at 536.794 kb on + strand, within BACOVA_05063at 536.871 kb on + strand, within BACOVA_05063at 536.872 kb on - strand, within BACOVA_05063at 536.944 kb on - strand, within BACOVA_05063at 537.027 kb on + strand, within BACOVA_05063at 537.027 kb on + strand, within BACOVA_05063at 537.027 kb on + strand, within BACOVA_05063at 537.027 kb on + strand, within BACOVA_05063at 537.027 kb on + strand, within BACOVA_05063at 537.028 kb on - strand, within BACOVA_05063at 537.028 kb on - strand, within BACOVA_05063at 537.028 kb on - strand, within BACOVA_05063at 537.029 kb on + strand, within BACOVA_05063at 537.030 kb on - strand, within BACOVA_05063at 537.030 kb on - strand, within BACOVA_05063at 537.093 kb on - strand, within BACOVA_05063at 537.102 kb on + strand, within BACOVA_05063at 537.130 kb on - strand, within BACOVA_05063at 537.160 kb on + strand, within BACOVA_05063at 537.160 kb on + strand, within BACOVA_05063at 537.161 kb on - strand, within BACOVA_05063at 537.174 kb on + strand, within BACOVA_05063at 537.175 kb on - strand, within BACOVA_05063at 537.175 kb on - strand, within BACOVA_05063at 537.179 kb on - strand, within BACOVA_05063at 537.270 kb on - strand, within BACOVA_05063at 537.270 kb on - strand, within BACOVA_05063at 537.283 kb on + strand, within BACOVA_05063at 537.283 kb on + strand, within BACOVA_05063at 537.283 kb on + strand, within BACOVA_05063at 537.284 kb on - strand, within BACOVA_05063at 537.284 kb on - strand, within BACOVA_05063at 537.284 kb on - strand, within BACOVA_05063at 537.285 kb on + strand, within BACOVA_05063at 537.286 kb on - strand, within BACOVA_05063at 537.310 kb on + strand, within BACOVA_05063at 537.311 kb on - strand, within BACOVA_05063at 537.380 kb on + strandat 537.381 kb on - strandat 537.382 kb on + strandat 537.382 kb on + strandat 537.383 kb on - strandat 537.383 kb on - strandat 537.400 kb on + strandat 537.424 kb on + strandat 537.428 kb on - strandat 537.474 kb on + strandat 537.514 kb on - strandat 537.515 kb on + strandat 537.518 kb on + strandat 537.519 kb on - strandat 537.519 kb on - strandat 537.533 kb on + strandat 537.533 kb on + strandat 537.534 kb on - strandat 537.566 kb on + strandat 537.573 kb on + strandat 537.587 kb on + strandat 537.659 kb on + strand, within BACOVA_05064at 537.659 kb on + strand, within BACOVA_05064at 537.660 kb on - strand, within BACOVA_05064at 537.680 kb on + strand, within BACOVA_05064at 537.680 kb on + strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.681 kb on - strand, within BACOVA_05064at 537.731 kb on - strand, within BACOVA_05064at 537.771 kb on - strand, within BACOVA_05064at 537.798 kb on + strand, within BACOVA_05064at 537.800 kb on + strand, within BACOVA_05064at 537.800 kb on + strand, within BACOVA_05064at 537.800 kb on + strand, within BACOVA_05064at 537.801 kb on - strand, within BACOVA_05064at 537.832 kb on - strand, within BACOVA_05064at 537.862 kb on + strand, within BACOVA_05064at 537.863 kb on - strand, within BACOVA_05064at 537.897 kb on + strand, within BACOVA_05064at 537.897 kb on + strand, within BACOVA_05064at 538.021 kb on + strand, within BACOVA_05064at 538.097 kb on - strand, within BACOVA_05064at 538.099 kb on + strand, within BACOVA_05064at 538.099 kb on + strand, within BACOVA_05064at 538.100 kb on - strand, within BACOVA_05064at 538.100 kb on - strand, within BACOVA_05064at 538.100 kb on - strand, within BACOVA_05064at 538.104 kb on + strand, within BACOVA_05064at 538.104 kb on + strand, within BACOVA_05064at 538.106 kb on + strand, within BACOVA_05064at 538.124 kb on + strand, within BACOVA_05064at 538.125 kb on - strand, within BACOVA_05064at 538.141 kb on - strand, within BACOVA_05064at 538.159 kb on - strand, within BACOVA_05064at 538.165 kb on - strand, within BACOVA_05064at 538.165 kb on - strand, within BACOVA_05064at 538.165 kb on - strand, within BACOVA_05064at 538.191 kb on + strand, within BACOVA_05064at 538.217 kb on + strand, within BACOVA_05064at 538.218 kb on - strand, within BACOVA_05064at 538.220 kb on + strand, within BACOVA_05064at 538.221 kb on - strand, within BACOVA_05064at 538.221 kb on - strand, within BACOVA_05064at 538.306 kb on + strand, within BACOVA_05064at 538.316 kb on + strand, within BACOVA_05064at 538.326 kb on - strand, within BACOVA_05064at 538.395 kb on + strandat 538.443 kb on + strandat 538.444 kb on - strandat 538.453 kb on - strandat 538.455 kb on - strandat 538.456 kb on + strandat 538.456 kb on + strandat 538.457 kb on - strandat 538.498 kb on - strandat 538.498 kb on - strandat 538.498 kb on - strandat 538.681 kb on - strand, within BACOVA_05065at 538.690 kb on - strand, within BACOVA_05065at 538.694 kb on - strand, within BACOVA_05065at 538.765 kb on - strand, within BACOVA_05065at 539.068 kb on - strand, within BACOVA_05065at 539.253 kb on + strandat 539.254 kb on - strandat 539.279 kb on - strandat 539.351 kb on - strand, within BACOVA_05066at 539.441 kb on + strand, within BACOVA_05066at 539.442 kb on - strand, within BACOVA_05066at 539.443 kb on + strand, within BACOVA_05066at 539.463 kb on + strand, within BACOVA_05066at 539.464 kb on - strand, within BACOVA_05066at 539.464 kb on - strand, within BACOVA_05066

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
remove
536,638 - BACOVA_05063 0.11 +0.4
536,680 - BACOVA_05063 0.16 +0.6
536,684 + BACOVA_05063 0.16 -0.0
536,701 + BACOVA_05063 0.18 -0.9
536,709 + BACOVA_05063 0.19 +0.4
536,710 - BACOVA_05063 0.19 +0.1
536,724 + BACOVA_05063 0.21 -2.5
536,730 + BACOVA_05063 0.21 -0.7
536,730 + BACOVA_05063 0.21 +1.1
536,730 + BACOVA_05063 0.21 -1.0
536,730 + BACOVA_05063 0.21 -2.0
536,731 - BACOVA_05063 0.22 +0.8
536,731 - BACOVA_05063 0.22 -3.5
536,732 + BACOVA_05063 0.22 +0.5
536,736 + BACOVA_05063 0.22 -0.4
536,737 - BACOVA_05063 0.22 -1.5
536,760 + BACOVA_05063 0.25 -0.2
536,794 + BACOVA_05063 0.28 -0.1
536,871 + BACOVA_05063 0.37 +1.2
536,872 - BACOVA_05063 0.37 +1.1
536,944 - BACOVA_05063 0.45 -1.4
537,027 + BACOVA_05063 0.54 +0.6
537,027 + BACOVA_05063 0.54 +0.3
537,027 + BACOVA_05063 0.54 +0.4
537,027 + BACOVA_05063 0.54 +1.0
537,027 + BACOVA_05063 0.54 +1.1
537,028 - BACOVA_05063 0.54 -0.3
537,028 - BACOVA_05063 0.54 -0.5
537,028 - BACOVA_05063 0.54 +1.3
537,029 + BACOVA_05063 0.54 +0.9
537,030 - BACOVA_05063 0.54 +0.5
537,030 - BACOVA_05063 0.54 +0.1
537,093 - BACOVA_05063 0.61 -1.3
537,102 + BACOVA_05063 0.62 +0.1
537,130 - BACOVA_05063 0.65 -0.1
537,160 + BACOVA_05063 0.68 -0.5
537,160 + BACOVA_05063 0.68 -0.1
537,161 - BACOVA_05063 0.68 -2.0
537,174 + BACOVA_05063 0.70 -0.3
537,175 - BACOVA_05063 0.70 +0.7
537,175 - BACOVA_05063 0.70 -0.5
537,179 - BACOVA_05063 0.70 +0.7
537,270 - BACOVA_05063 0.80 -1.2
537,270 - BACOVA_05063 0.80 -0.2
537,283 + BACOVA_05063 0.82 +0.3
537,283 + BACOVA_05063 0.82 -0.4
537,283 + BACOVA_05063 0.82 +0.3
537,284 - BACOVA_05063 0.82 +0.3
537,284 - BACOVA_05063 0.82 +0.9
537,284 - BACOVA_05063 0.82 +0.3
537,285 + BACOVA_05063 0.82 +0.8
537,286 - BACOVA_05063 0.82 -0.3
537,310 + BACOVA_05063 0.85 +1.6
537,311 - BACOVA_05063 0.85 +0.9
537,380 + -0.1
537,381 - +0.8
537,382 + -0.4
537,382 + +0.4
537,383 - +2.1
537,383 - +0.1
537,400 + +0.1
537,424 + +0.8
537,428 - +0.7
537,474 + -0.7
537,514 - +1.1
537,515 + -2.2
537,518 + +0.2
537,519 - +1.1
537,519 - +0.6
537,533 + -0.5
537,533 + -0.0
537,534 - -0.6
537,566 + +1.5
537,573 + -0.4
537,587 + -1.8
537,659 + BACOVA_05064 0.14 +1.1
537,659 + BACOVA_05064 0.14 +0.2
537,660 - BACOVA_05064 0.14 +1.0
537,680 + BACOVA_05064 0.17 +0.7
537,680 + BACOVA_05064 0.17 +0.4
537,681 - BACOVA_05064 0.17 -0.6
537,681 - BACOVA_05064 0.17 +0.1
537,681 - BACOVA_05064 0.17 -0.7
537,681 - BACOVA_05064 0.17 -0.7
537,681 - BACOVA_05064 0.17 -1.0
537,681 - BACOVA_05064 0.17 +0.9
537,681 - BACOVA_05064 0.17 +0.1
537,681 - BACOVA_05064 0.17 -0.8
537,681 - BACOVA_05064 0.17 -1.0
537,731 - BACOVA_05064 0.22 -0.0
537,771 - BACOVA_05064 0.26 -1.3
537,798 + BACOVA_05064 0.29 +0.1
537,800 + BACOVA_05064 0.29 -0.1
537,800 + BACOVA_05064 0.29 +0.7
537,800 + BACOVA_05064 0.29 +0.7
537,801 - BACOVA_05064 0.29 +1.0
537,832 - BACOVA_05064 0.32 -0.4
537,862 + BACOVA_05064 0.36 -1.9
537,863 - BACOVA_05064 0.36 -1.0
537,897 + BACOVA_05064 0.39 +0.2
537,897 + BACOVA_05064 0.39 +0.9
538,021 + BACOVA_05064 0.52 -0.8
538,097 - BACOVA_05064 0.60 -1.4
538,099 + BACOVA_05064 0.61 +0.8
538,099 + BACOVA_05064 0.61 -1.4
538,100 - BACOVA_05064 0.61 +0.1
538,100 - BACOVA_05064 0.61 +0.5
538,100 - BACOVA_05064 0.61 -0.5
538,104 + BACOVA_05064 0.61 +1.4
538,104 + BACOVA_05064 0.61 -0.1
538,106 + BACOVA_05064 0.61 -1.0
538,124 + BACOVA_05064 0.63 +0.2
538,125 - BACOVA_05064 0.63 -1.1
538,141 - BACOVA_05064 0.65 +1.3
538,159 - BACOVA_05064 0.67 -1.3
538,165 - BACOVA_05064 0.68 -0.2
538,165 - BACOVA_05064 0.68 -0.7
538,165 - BACOVA_05064 0.68 +0.6
538,191 + BACOVA_05064 0.70 +0.2
538,217 + BACOVA_05064 0.73 -0.8
538,218 - BACOVA_05064 0.73 +1.3
538,220 + BACOVA_05064 0.73 -2.1
538,221 - BACOVA_05064 0.73 -0.4
538,221 - BACOVA_05064 0.73 +1.1
538,306 + BACOVA_05064 0.82 +0.5
538,316 + BACOVA_05064 0.83 +0.7
538,326 - BACOVA_05064 0.84 -0.6
538,395 + -3.3
538,443 + -1.7
538,444 - +1.0
538,453 - -0.8
538,455 - -0.0
538,456 + -0.3
538,456 + -2.0
538,457 - +3.0
538,498 - -1.0
538,498 - -1.1
538,498 - -1.1
538,681 - BACOVA_05065 0.25 -0.0
538,690 - BACOVA_05065 0.26 +0.3
538,694 - BACOVA_05065 0.27 -0.3
538,765 - BACOVA_05065 0.36 -0.9
539,068 - BACOVA_05065 0.76 -0.5
539,253 + -1.0
539,254 - +0.3
539,279 - +2.2
539,351 - BACOVA_05066 0.10 -0.0
539,441 + BACOVA_05066 0.19 -0.3
539,442 - BACOVA_05066 0.19 +0.5
539,443 + BACOVA_05066 0.19 -0.7
539,463 + BACOVA_05066 0.21 -0.5
539,464 - BACOVA_05066 0.21 +1.9
539,464 - BACOVA_05066 0.21 +0.7

Or see this region's nucleotide sequence