Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04492

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04491 and BACOVA_04492 are separated by 17 nucleotidesBACOVA_04492 and BACOVA_04493 overlap by 4 nucleotides BACOVA_04491: BACOVA_04491 - ABC transporter, substrate-binding protein, QAT family, at 422,361 to 423,233 _04491 BACOVA_04492: BACOVA_04492 - ABC transporter, permease protein, at 423,251 to 424,075 _04492 BACOVA_04493: BACOVA_04493 - glycine betaine/L-proline transport ATP binding subunit, at 424,072 to 425,298 _04493 Position (kb) 423 424 425Strain fitness (log2 ratio) -2 -1 0 1 2at 422.254 kb on - strandat 422.268 kb on + strandat 422.269 kb on - strandat 422.269 kb on - strandat 422.293 kb on + strandat 422.294 kb on - strandat 422.297 kb on - strandat 422.334 kb on + strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.347 kb on - strandat 422.362 kb on + strandat 422.390 kb on + strandat 422.390 kb on + strandat 422.390 kb on + strandat 422.423 kb on + strandat 422.431 kb on - strandat 422.463 kb on - strand, within BACOVA_04491at 422.471 kb on + strand, within BACOVA_04491at 422.481 kb on - strand, within BACOVA_04491at 422.481 kb on - strand, within BACOVA_04491at 422.561 kb on + strand, within BACOVA_04491at 422.562 kb on - strand, within BACOVA_04491at 422.568 kb on + strand, within BACOVA_04491at 422.568 kb on + strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.569 kb on - strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.589 kb on + strand, within BACOVA_04491at 422.590 kb on - strand, within BACOVA_04491at 422.735 kb on + strand, within BACOVA_04491at 422.735 kb on + strand, within BACOVA_04491at 422.738 kb on - strand, within BACOVA_04491at 422.809 kb on - strand, within BACOVA_04491at 422.911 kb on - strand, within BACOVA_04491at 422.911 kb on - strand, within BACOVA_04491at 422.941 kb on + strand, within BACOVA_04491at 422.952 kb on - strand, within BACOVA_04491at 422.953 kb on + strand, within BACOVA_04491at 422.953 kb on + strand, within BACOVA_04491at 422.973 kb on + strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.015 kb on - strand, within BACOVA_04491at 423.019 kb on - strand, within BACOVA_04491at 423.061 kb on + strand, within BACOVA_04491at 423.107 kb on + strand, within BACOVA_04491at 423.107 kb on + strand, within BACOVA_04491at 423.108 kb on - strand, within BACOVA_04491at 423.128 kb on - strand, within BACOVA_04491at 423.215 kb on + strandat 423.216 kb on - strandat 423.217 kb on + strandat 423.220 kb on - strandat 423.290 kb on - strandat 423.290 kb on - strandat 423.304 kb on + strandat 423.305 kb on - strandat 423.308 kb on + strandat 423.323 kb on + strandat 423.323 kb on + strandat 423.325 kb on + strandat 423.424 kb on + strand, within BACOVA_04492at 423.425 kb on - strand, within BACOVA_04492at 423.425 kb on - strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.439 kb on + strand, within BACOVA_04492at 423.440 kb on - strand, within BACOVA_04492at 423.496 kb on + strand, within BACOVA_04492at 423.496 kb on + strand, within BACOVA_04492at 423.499 kb on - strand, within BACOVA_04492at 423.504 kb on - strand, within BACOVA_04492at 423.601 kb on + strand, within BACOVA_04492at 423.602 kb on - strand, within BACOVA_04492at 423.764 kb on + strand, within BACOVA_04492at 423.765 kb on - strand, within BACOVA_04492at 423.790 kb on + strand, within BACOVA_04492at 423.790 kb on + strand, within BACOVA_04492at 423.791 kb on - strand, within BACOVA_04492at 423.823 kb on + strand, within BACOVA_04492at 423.854 kb on + strand, within BACOVA_04492at 423.854 kb on + strand, within BACOVA_04492at 423.855 kb on - strand, within BACOVA_04492at 423.855 kb on - strand, within BACOVA_04492at 423.857 kb on + strand, within BACOVA_04492at 423.858 kb on - strand, within BACOVA_04492at 423.924 kb on - strand, within BACOVA_04492at 423.932 kb on + strand, within BACOVA_04492at 423.933 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.935 kb on - strand, within BACOVA_04492at 423.977 kb on - strand, within BACOVA_04492at 424.025 kb on + strandat 424.052 kb on + strandat 424.052 kb on + strandat 424.052 kb on + strandat 424.053 kb on - strandat 424.054 kb on + strandat 424.054 kb on + strandat 424.054 kb on + strandat 424.055 kb on - strandat 424.055 kb on - strandat 424.055 kb on - strandat 424.056 kb on + strandat 424.064 kb on + strandat 424.067 kb on - strandat 424.082 kb on - strandat 424.097 kb on - strandat 424.141 kb on + strandat 424.196 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493at 424.229 kb on - strand, within BACOVA_04493at 424.265 kb on - strand, within BACOVA_04493at 424.265 kb on - strand, within BACOVA_04493at 424.265 kb on - strand, within BACOVA_04493at 424.312 kb on + strand, within BACOVA_04493at 424.313 kb on - strand, within BACOVA_04493at 424.318 kb on - strand, within BACOVA_04493at 424.318 kb on - strand, within BACOVA_04493at 424.354 kb on - strand, within BACOVA_04493at 424.379 kb on - strand, within BACOVA_04493at 424.386 kb on + strand, within BACOVA_04493at 424.386 kb on + strand, within BACOVA_04493at 424.387 kb on - strand, within BACOVA_04493at 424.404 kb on + strand, within BACOVA_04493at 424.415 kb on - strand, within BACOVA_04493at 424.488 kb on + strand, within BACOVA_04493at 424.489 kb on - strand, within BACOVA_04493at 424.519 kb on + strand, within BACOVA_04493at 424.523 kb on + strand, within BACOVA_04493at 424.523 kb on + strand, within BACOVA_04493at 424.523 kb on + strand, within BACOVA_04493at 424.524 kb on - strand, within BACOVA_04493at 424.524 kb on - strand, within BACOVA_04493at 424.524 kb on - strand, within BACOVA_04493at 424.564 kb on + strand, within BACOVA_04493at 424.565 kb on - strand, within BACOVA_04493at 424.590 kb on + strand, within BACOVA_04493at 424.741 kb on + strand, within BACOVA_04493at 424.748 kb on - strand, within BACOVA_04493at 424.857 kb on + strand, within BACOVA_04493at 424.923 kb on + strand, within BACOVA_04493at 425.002 kb on + strand, within BACOVA_04493at 425.003 kb on - strand, within BACOVA_04493at 425.023 kb on - strand, within BACOVA_04493at 425.027 kb on - strand, within BACOVA_04493at 425.028 kb on + strand, within BACOVA_04493at 425.028 kb on + strand, within BACOVA_04493at 425.028 kb on + strand, within BACOVA_04493at 425.028 kb on + strand, within BACOVA_04493at 425.028 kb on + strand, within BACOVA_04493at 425.032 kb on + strand, within BACOVA_04493at 425.032 kb on + strand, within BACOVA_04493at 425.033 kb on - strand, within BACOVA_04493at 425.061 kb on + strand, within BACOVA_04493at 425.061 kb on + strand, within BACOVA_04493at 425.068 kb on + strand, within BACOVA_04493at 425.069 kb on - strand, within BACOVA_04493

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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422,254 - -0.7
422,268 + -0.0
422,269 - -0.2
422,269 - +0.5
422,293 + +1.4
422,294 - +0.5
422,297 - +0.0
422,334 + +0.1
422,347 - -0.6
422,347 - +1.1
422,347 - +0.1
422,362 + -0.0
422,390 + +0.5
422,390 + +0.3
422,390 + -0.0
422,423 + +1.8
422,431 - +0.2
422,463 - BACOVA_04491 0.12 +0.1
422,471 + BACOVA_04491 0.13 -0.2
422,481 - BACOVA_04491 0.14 -0.1
422,481 - BACOVA_04491 0.14 +0.2
422,561 + BACOVA_04491 0.23 -0.5
422,562 - BACOVA_04491 0.23 -0.7
422,568 + BACOVA_04491 0.24 +0.6
422,568 + BACOVA_04491 0.24 +1.7
422,569 - BACOVA_04491 0.24 -1.4
422,569 - BACOVA_04491 0.24 -1.1
422,569 - BACOVA_04491 0.24 +0.7
422,569 - BACOVA_04491 0.24 +1.6
422,569 - BACOVA_04491 0.24 +0.4
422,589 + BACOVA_04491 0.26 -1.4
422,589 + BACOVA_04491 0.26 +0.6
422,589 + BACOVA_04491 0.26 -0.3
422,590 - BACOVA_04491 0.26 +0.3
422,735 + BACOVA_04491 0.43 -2.1
422,735 + BACOVA_04491 0.43 -0.9
422,738 - BACOVA_04491 0.43 +0.6
422,809 - BACOVA_04491 0.51 -0.2
422,911 - BACOVA_04491 0.63 -0.4
422,911 - BACOVA_04491 0.63 -1.0
422,941 + BACOVA_04491 0.66 +1.0
422,952 - BACOVA_04491 0.68 -1.7
422,953 + BACOVA_04491 0.68 +0.1
422,953 + BACOVA_04491 0.68 +0.7
422,973 + BACOVA_04491 0.70 -0.1
423,015 - BACOVA_04491 0.75 +1.5
423,015 - BACOVA_04491 0.75 -1.7
423,015 - BACOVA_04491 0.75 +1.0
423,019 - BACOVA_04491 0.75 +0.7
423,061 + BACOVA_04491 0.80 +1.4
423,107 + BACOVA_04491 0.85 -0.5
423,107 + BACOVA_04491 0.85 +0.6
423,108 - BACOVA_04491 0.86 -1.6
423,128 - BACOVA_04491 0.88 -1.0
423,215 + +0.5
423,216 - -1.0
423,217 + -0.8
423,220 - -0.5
423,290 - -0.9
423,290 - +0.1
423,304 + -0.0
423,305 - +1.2
423,308 + -0.8
423,323 + -0.1
423,323 + +0.3
423,325 + -1.9
423,424 + BACOVA_04492 0.21 +1.0
423,425 - BACOVA_04492 0.21 +0.7
423,425 - BACOVA_04492 0.21 -2.4
423,439 + BACOVA_04492 0.23 +0.3
423,439 + BACOVA_04492 0.23 -0.6
423,439 + BACOVA_04492 0.23 +0.3
423,440 - BACOVA_04492 0.23 -0.6
423,496 + BACOVA_04492 0.30 -1.0
423,496 + BACOVA_04492 0.30 -0.4
423,499 - BACOVA_04492 0.30 -1.0
423,504 - BACOVA_04492 0.31 -1.3
423,601 + BACOVA_04492 0.42 -1.9
423,602 - BACOVA_04492 0.43 -2.3
423,764 + BACOVA_04492 0.62 +0.4
423,765 - BACOVA_04492 0.62 -1.7
423,790 + BACOVA_04492 0.65 -0.2
423,790 + BACOVA_04492 0.65 +1.2
423,791 - BACOVA_04492 0.65 -1.0
423,823 + BACOVA_04492 0.69 +0.1
423,854 + BACOVA_04492 0.73 +1.3
423,854 + BACOVA_04492 0.73 -1.3
423,855 - BACOVA_04492 0.73 +0.6
423,855 - BACOVA_04492 0.73 -1.4
423,857 + BACOVA_04492 0.73 +0.5
423,858 - BACOVA_04492 0.74 -0.0
423,924 - BACOVA_04492 0.82 -0.9
423,932 + BACOVA_04492 0.83 +0.6
423,933 - BACOVA_04492 0.83 -1.7
423,935 - BACOVA_04492 0.83 -0.5
423,935 - BACOVA_04492 0.83 +0.3
423,935 - BACOVA_04492 0.83 -1.9
423,977 - BACOVA_04492 0.88 -2.0
424,025 + +0.0
424,052 + -0.4
424,052 + -0.1
424,052 + +1.9
424,053 - -1.0
424,054 + -1.0
424,054 + -0.1
424,054 + +0.2
424,055 - +0.4
424,055 - -0.9
424,055 - +0.1
424,056 + -1.0
424,064 + -0.5
424,067 - +0.9
424,082 - -0.2
424,097 - -0.6
424,141 + +1.0
424,196 - BACOVA_04493 0.10 -0.7
424,229 - BACOVA_04493 0.13 +0.2
424,229 - BACOVA_04493 0.13 +0.2
424,229 - BACOVA_04493 0.13 +0.2
424,265 - BACOVA_04493 0.16 +0.7
424,265 - BACOVA_04493 0.16 -0.8
424,265 - BACOVA_04493 0.16 -1.1
424,312 + BACOVA_04493 0.20 +0.9
424,313 - BACOVA_04493 0.20 -0.1
424,318 - BACOVA_04493 0.20 +1.2
424,318 - BACOVA_04493 0.20 -1.3
424,354 - BACOVA_04493 0.23 +2.1
424,379 - BACOVA_04493 0.25 -0.9
424,386 + BACOVA_04493 0.26 -1.3
424,386 + BACOVA_04493 0.26 -0.6
424,387 - BACOVA_04493 0.26 +1.3
424,404 + BACOVA_04493 0.27 +1.1
424,415 - BACOVA_04493 0.28 +0.0
424,488 + BACOVA_04493 0.34 +1.8
424,489 - BACOVA_04493 0.34 +0.2
424,519 + BACOVA_04493 0.36 -0.1
424,523 + BACOVA_04493 0.37 -1.1
424,523 + BACOVA_04493 0.37 +1.8
424,523 + BACOVA_04493 0.37 -0.1
424,524 - BACOVA_04493 0.37 -0.8
424,524 - BACOVA_04493 0.37 +1.2
424,524 - BACOVA_04493 0.37 -1.9
424,564 + BACOVA_04493 0.40 -2.0
424,565 - BACOVA_04493 0.40 -1.0
424,590 + BACOVA_04493 0.42 -0.5
424,741 + BACOVA_04493 0.55 +1.2
424,748 - BACOVA_04493 0.55 +1.2
424,857 + BACOVA_04493 0.64 -1.6
424,923 + BACOVA_04493 0.69 -1.0
425,002 + BACOVA_04493 0.76 +0.2
425,003 - BACOVA_04493 0.76 -0.4
425,023 - BACOVA_04493 0.78 -0.8
425,027 - BACOVA_04493 0.78 +0.4
425,028 + BACOVA_04493 0.78 -0.5
425,028 + BACOVA_04493 0.78 -1.3
425,028 + BACOVA_04493 0.78 +0.3
425,028 + BACOVA_04493 0.78 -2.5
425,028 + BACOVA_04493 0.78 +0.6
425,032 + BACOVA_04493 0.78 +0.4
425,032 + BACOVA_04493 0.78 -0.3
425,033 - BACOVA_04493 0.78 -1.3
425,061 + BACOVA_04493 0.81 -0.6
425,061 + BACOVA_04493 0.81 -0.4
425,068 + BACOVA_04493 0.81 +0.9
425,069 - BACOVA_04493 0.81 -0.3

Or see this region's nucleotide sequence