Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04417 and BACOVA_04418 are separated by 186 nucleotides BACOVA_04418 and BACOVA_04419 are separated by 7 nucleotides
BACOVA_04417: BACOVA_04417 - phosphate-selective porin O and P, at 332,378 to 333,370
_04417
BACOVA_04418: BACOVA_04418 - hypothetical protein, at 333,557 to 334,741
_04418
BACOVA_04419: BACOVA_04419 - tetratricopeptide repeat protein, at 334,749 to 336,956
_04419
Position (kb) 333
334
335 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 332.578 kb on + strand, within BACOVA_04417 at 332.578 kb on + strand, within BACOVA_04417 at 332.578 kb on + strand, within BACOVA_04417 at 332.578 kb on + strand, within BACOVA_04417 at 332.579 kb on - strand, within BACOVA_04417 at 332.582 kb on + strand, within BACOVA_04417 at 332.592 kb on - strand, within BACOVA_04417 at 332.620 kb on + strand, within BACOVA_04417 at 332.647 kb on + strand, within BACOVA_04417 at 332.657 kb on - strand, within BACOVA_04417 at 332.678 kb on + strand, within BACOVA_04417 at 332.681 kb on - strand, within BACOVA_04417 at 332.681 kb on - strand, within BACOVA_04417 at 332.704 kb on + strand, within BACOVA_04417 at 332.704 kb on + strand, within BACOVA_04417 at 332.707 kb on + strand, within BACOVA_04417 at 332.712 kb on + strand, within BACOVA_04417 at 332.730 kb on - strand, within BACOVA_04417 at 332.760 kb on + strand, within BACOVA_04417 at 332.773 kb on + strand, within BACOVA_04417 at 332.809 kb on + strand, within BACOVA_04417 at 332.810 kb on - strand, within BACOVA_04417 at 332.829 kb on + strand, within BACOVA_04417 at 332.849 kb on + strand, within BACOVA_04417 at 332.851 kb on + strand, within BACOVA_04417 at 332.852 kb on - strand, within BACOVA_04417 at 332.852 kb on - strand, within BACOVA_04417 at 332.852 kb on - strand, within BACOVA_04417 at 332.852 kb on - strand, within BACOVA_04417 at 332.856 kb on + strand, within BACOVA_04417 at 332.932 kb on + strand, within BACOVA_04417 at 332.956 kb on - strand, within BACOVA_04417 at 333.006 kb on - strand, within BACOVA_04417 at 333.083 kb on - strand, within BACOVA_04417 at 333.098 kb on + strand, within BACOVA_04417 at 333.099 kb on - strand, within BACOVA_04417 at 333.197 kb on + strand, within BACOVA_04417 at 333.241 kb on + strand, within BACOVA_04417 at 333.242 kb on - strand, within BACOVA_04417 at 333.258 kb on - strand, within BACOVA_04417 at 333.258 kb on - strand, within BACOVA_04417 at 333.294 kb on - strand at 333.294 kb on - strand at 333.308 kb on - strand at 333.381 kb on + strand at 333.388 kb on - strand at 333.395 kb on - strand at 333.398 kb on + strand at 333.402 kb on - strand at 333.429 kb on - strand at 333.457 kb on - strand at 333.460 kb on - strand at 333.460 kb on - strand at 333.463 kb on + strand at 333.464 kb on - strand at 333.472 kb on - strand at 333.472 kb on - strand at 333.477 kb on + strand at 333.484 kb on - strand at 333.484 kb on - strand at 333.492 kb on - strand at 333.516 kb on - strand at 333.522 kb on - strand at 333.529 kb on - strand at 333.609 kb on + strand at 333.610 kb on - strand at 333.610 kb on - strand at 333.721 kb on + strand, within BACOVA_04418 at 333.754 kb on + strand, within BACOVA_04418 at 333.754 kb on + strand, within BACOVA_04418 at 333.761 kb on + strand, within BACOVA_04418 at 333.761 kb on + strand, within BACOVA_04418 at 333.761 kb on + strand, within BACOVA_04418 at 333.762 kb on - strand, within BACOVA_04418 at 333.762 kb on - strand, within BACOVA_04418 at 333.762 kb on - strand, within BACOVA_04418 at 333.870 kb on + strand, within BACOVA_04418 at 333.870 kb on + strand, within BACOVA_04418 at 333.879 kb on + strand, within BACOVA_04418 at 333.880 kb on - strand, within BACOVA_04418 at 333.880 kb on - strand, within BACOVA_04418 at 333.916 kb on - strand, within BACOVA_04418 at 333.926 kb on + strand, within BACOVA_04418 at 333.927 kb on - strand, within BACOVA_04418 at 333.977 kb on - strand, within BACOVA_04418 at 333.999 kb on + strand, within BACOVA_04418 at 333.999 kb on + strand, within BACOVA_04418 at 333.999 kb on + strand, within BACOVA_04418 at 334.000 kb on - strand, within BACOVA_04418 at 334.002 kb on + strand, within BACOVA_04418 at 334.002 kb on + strand, within BACOVA_04418 at 334.003 kb on - strand, within BACOVA_04418 at 334.037 kb on + strand, within BACOVA_04418 at 334.037 kb on + strand, within BACOVA_04418 at 334.038 kb on - strand, within BACOVA_04418 at 334.038 kb on - strand, within BACOVA_04418 at 334.038 kb on - strand, within BACOVA_04418 at 334.058 kb on + strand, within BACOVA_04418 at 334.085 kb on + strand, within BACOVA_04418 at 334.151 kb on - strand, within BACOVA_04418 at 334.151 kb on - strand, within BACOVA_04418 at 334.201 kb on + strand, within BACOVA_04418 at 334.201 kb on + strand, within BACOVA_04418 at 334.201 kb on + strand, within BACOVA_04418 at 334.201 kb on + strand, within BACOVA_04418 at 334.206 kb on + strand, within BACOVA_04418 at 334.257 kb on - strand, within BACOVA_04418 at 334.265 kb on + strand, within BACOVA_04418 at 334.334 kb on + strand, within BACOVA_04418 at 334.349 kb on - strand, within BACOVA_04418 at 334.393 kb on - strand, within BACOVA_04418 at 334.404 kb on + strand, within BACOVA_04418 at 334.404 kb on + strand, within BACOVA_04418 at 334.405 kb on - strand, within BACOVA_04418 at 334.434 kb on + strand, within BACOVA_04418 at 334.434 kb on + strand, within BACOVA_04418 at 334.437 kb on + strand, within BACOVA_04418 at 334.453 kb on - strand, within BACOVA_04418 at 334.568 kb on + strand, within BACOVA_04418 at 334.595 kb on + strand, within BACOVA_04418 at 334.596 kb on - strand, within BACOVA_04418 at 334.611 kb on - strand, within BACOVA_04418 at 334.739 kb on + strand at 334.747 kb on + strand at 334.779 kb on + strand at 334.785 kb on + strand at 334.785 kb on + strand at 334.787 kb on + strand at 334.787 kb on + strand at 334.787 kb on + strand at 334.790 kb on - strand at 334.874 kb on - strand at 334.905 kb on + strand at 334.905 kb on + strand at 334.906 kb on - strand at 334.912 kb on - strand at 334.912 kb on - strand at 334.966 kb on - strand at 335.021 kb on - strand, within BACOVA_04419 at 335.021 kb on - strand, within BACOVA_04419 at 335.043 kb on + strand, within BACOVA_04419 at 335.046 kb on + strand, within BACOVA_04419 at 335.046 kb on + strand, within BACOVA_04419 at 335.046 kb on + strand, within BACOVA_04419 at 335.092 kb on - strand, within BACOVA_04419 at 335.108 kb on - strand, within BACOVA_04419 at 335.110 kb on + strand, within BACOVA_04419 at 335.111 kb on - strand, within BACOVA_04419 at 335.111 kb on - strand, within BACOVA_04419 at 335.213 kb on + strand, within BACOVA_04419 at 335.219 kb on + strand, within BACOVA_04419 at 335.221 kb on + strand, within BACOVA_04419 at 335.221 kb on + strand, within BACOVA_04419 at 335.221 kb on + strand, within BACOVA_04419 at 335.222 kb on - strand, within BACOVA_04419 at 335.222 kb on - strand, within BACOVA_04419 at 335.222 kb on - strand, within BACOVA_04419 at 335.294 kb on - strand, within BACOVA_04419 at 335.311 kb on + strand, within BACOVA_04419 at 335.312 kb on - strand, within BACOVA_04419 at 335.312 kb on - strand, within BACOVA_04419 at 335.312 kb on - strand, within BACOVA_04419 at 335.312 kb on - strand, within BACOVA_04419 at 335.371 kb on + strand, within BACOVA_04419 at 335.392 kb on - strand, within BACOVA_04419 at 335.392 kb on - strand, within BACOVA_04419 at 335.445 kb on - strand, within BACOVA_04419 at 335.458 kb on - strand, within BACOVA_04419 at 335.458 kb on - strand, within BACOVA_04419 at 335.472 kb on - strand, within BACOVA_04419 at 335.492 kb on - strand, within BACOVA_04419 at 335.563 kb on + strand, within BACOVA_04419 at 335.564 kb on - strand, within BACOVA_04419
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 332,578 + BACOVA_04417 0.20 -1.0 332,578 + BACOVA_04417 0.20 +0.9 332,578 + BACOVA_04417 0.20 -0.4 332,578 + BACOVA_04417 0.20 -0.6 332,579 - BACOVA_04417 0.20 +1.5 332,582 + BACOVA_04417 0.21 -0.8 332,592 - BACOVA_04417 0.22 +1.7 332,620 + BACOVA_04417 0.24 -2.2 332,647 + BACOVA_04417 0.27 +0.9 332,657 - BACOVA_04417 0.28 -0.1 332,678 + BACOVA_04417 0.30 -0.3 332,681 - BACOVA_04417 0.31 -1.0 332,681 - BACOVA_04417 0.31 +0.4 332,704 + BACOVA_04417 0.33 +0.7 332,704 + BACOVA_04417 0.33 +1.1 332,707 + BACOVA_04417 0.33 -0.8 332,712 + BACOVA_04417 0.34 -0.0 332,730 - BACOVA_04417 0.35 +0.4 332,760 + BACOVA_04417 0.38 +0.5 332,773 + BACOVA_04417 0.40 -0.9 332,809 + BACOVA_04417 0.43 -0.7 332,810 - BACOVA_04417 0.44 -0.1 332,829 + BACOVA_04417 0.45 +0.2 332,849 + BACOVA_04417 0.47 -0.3 332,851 + BACOVA_04417 0.48 +0.2 332,852 - BACOVA_04417 0.48 -0.1 332,852 - BACOVA_04417 0.48 +0.8 332,852 - BACOVA_04417 0.48 +1.1 332,852 - BACOVA_04417 0.48 +0.8 332,856 + BACOVA_04417 0.48 +0.9 332,932 + BACOVA_04417 0.56 +0.8 332,956 - BACOVA_04417 0.58 -0.4 333,006 - BACOVA_04417 0.63 -1.3 333,083 - BACOVA_04417 0.71 +0.6 333,098 + BACOVA_04417 0.73 -0.8 333,099 - BACOVA_04417 0.73 +1.4 333,197 + BACOVA_04417 0.82 +0.1 333,241 + BACOVA_04417 0.87 +0.2 333,242 - BACOVA_04417 0.87 -0.3 333,258 - BACOVA_04417 0.89 +1.1 333,258 - BACOVA_04417 0.89 +1.7 333,294 - +0.6 333,294 - +1.6 333,308 - +0.0 333,381 + -0.7 333,388 - -1.3 333,395 - -0.1 333,398 + +1.2 333,402 - -1.9 333,429 - -0.8 333,457 - -0.6 333,460 - +1.1 333,460 - -1.7 333,463 + +0.6 333,464 - -0.9 333,472 - -0.1 333,472 - -0.6 333,477 + -0.2 333,484 - +0.0 333,484 - +0.5 333,492 - -1.0 333,516 - +0.0 333,522 - -0.6 333,529 - -0.1 333,609 + -0.4 333,610 - +1.1 333,610 - +1.3 333,721 + BACOVA_04418 0.14 -0.1 333,754 + BACOVA_04418 0.17 -0.7 333,754 + BACOVA_04418 0.17 +0.6 333,761 + BACOVA_04418 0.17 -0.1 333,761 + BACOVA_04418 0.17 -0.2 333,761 + BACOVA_04418 0.17 +1.0 333,762 - BACOVA_04418 0.17 -0.5 333,762 - BACOVA_04418 0.17 +1.0 333,762 - BACOVA_04418 0.17 -0.4 333,870 + BACOVA_04418 0.26 +1.0 333,870 + BACOVA_04418 0.26 -2.5 333,879 + BACOVA_04418 0.27 -0.6 333,880 - BACOVA_04418 0.27 +0.8 333,880 - BACOVA_04418 0.27 -0.4 333,916 - BACOVA_04418 0.30 -0.3 333,926 + BACOVA_04418 0.31 -0.2 333,927 - BACOVA_04418 0.31 +0.4 333,977 - BACOVA_04418 0.35 +0.0 333,999 + BACOVA_04418 0.37 -0.3 333,999 + BACOVA_04418 0.37 -0.3 333,999 + BACOVA_04418 0.37 -1.8 334,000 - BACOVA_04418 0.37 -0.6 334,002 + BACOVA_04418 0.38 +0.9 334,002 + BACOVA_04418 0.38 +0.0 334,003 - BACOVA_04418 0.38 -1.7 334,037 + BACOVA_04418 0.41 -0.2 334,037 + BACOVA_04418 0.41 -0.0 334,038 - BACOVA_04418 0.41 -0.1 334,038 - BACOVA_04418 0.41 +0.3 334,038 - BACOVA_04418 0.41 -1.4 334,058 + BACOVA_04418 0.42 +0.8 334,085 + BACOVA_04418 0.45 -1.5 334,151 - BACOVA_04418 0.50 -0.5 334,151 - BACOVA_04418 0.50 -0.5 334,201 + BACOVA_04418 0.54 -0.1 334,201 + BACOVA_04418 0.54 -0.3 334,201 + BACOVA_04418 0.54 +0.2 334,201 + BACOVA_04418 0.54 +0.3 334,206 + BACOVA_04418 0.55 +0.2 334,257 - BACOVA_04418 0.59 -1.3 334,265 + BACOVA_04418 0.60 +0.5 334,334 + BACOVA_04418 0.66 -2.7 334,349 - BACOVA_04418 0.67 -2.9 334,393 - BACOVA_04418 0.71 -0.7 334,404 + BACOVA_04418 0.71 +1.4 334,404 + BACOVA_04418 0.71 -0.4 334,405 - BACOVA_04418 0.72 -1.6 334,434 + BACOVA_04418 0.74 +1.6 334,434 + BACOVA_04418 0.74 +0.6 334,437 + BACOVA_04418 0.74 -0.1 334,453 - BACOVA_04418 0.76 -1.7 334,568 + BACOVA_04418 0.85 +1.0 334,595 + BACOVA_04418 0.88 +0.1 334,596 - BACOVA_04418 0.88 -0.4 334,611 - BACOVA_04418 0.89 +0.0 334,739 + -0.1 334,747 + -0.7 334,779 + -0.1 334,785 + -0.7 334,785 + +1.8 334,787 + -1.9 334,787 + -0.3 334,787 + +0.4 334,790 - -0.4 334,874 - -0.8 334,905 + -1.8 334,905 + -0.7 334,906 - -1.4 334,912 - +0.4 334,912 - -0.6 334,966 - -0.6 335,021 - BACOVA_04419 0.12 -1.0 335,021 - BACOVA_04419 0.12 +0.6 335,043 + BACOVA_04419 0.13 -1.6 335,046 + BACOVA_04419 0.13 +0.9 335,046 + BACOVA_04419 0.13 +0.6 335,046 + BACOVA_04419 0.13 -0.4 335,092 - BACOVA_04419 0.16 +0.9 335,108 - BACOVA_04419 0.16 -1.0 335,110 + BACOVA_04419 0.16 -2.0 335,111 - BACOVA_04419 0.16 -0.5 335,111 - BACOVA_04419 0.16 -2.2 335,213 + BACOVA_04419 0.21 -1.8 335,219 + BACOVA_04419 0.21 -1.9 335,221 + BACOVA_04419 0.21 -2.0 335,221 + BACOVA_04419 0.21 -0.4 335,221 + BACOVA_04419 0.21 -0.2 335,222 - BACOVA_04419 0.21 -0.3 335,222 - BACOVA_04419 0.21 -0.9 335,222 - BACOVA_04419 0.21 -0.1 335,294 - BACOVA_04419 0.25 -0.1 335,311 + BACOVA_04419 0.25 +0.0 335,312 - BACOVA_04419 0.25 +1.3 335,312 - BACOVA_04419 0.25 +1.5 335,312 - BACOVA_04419 0.25 +0.3 335,312 - BACOVA_04419 0.25 -1.6 335,371 + BACOVA_04419 0.28 -0.3 335,392 - BACOVA_04419 0.29 -1.1 335,392 - BACOVA_04419 0.29 +0.6 335,445 - BACOVA_04419 0.32 -1.7 335,458 - BACOVA_04419 0.32 -1.3 335,458 - BACOVA_04419 0.32 -0.2 335,472 - BACOVA_04419 0.33 +1.9 335,492 - BACOVA_04419 0.34 -0.3 335,563 + BACOVA_04419 0.37 +0.5 335,564 - BACOVA_04419 0.37 +0.4
Or see this region's nucleotide sequence