Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04182 and BACOVA_04183 are separated by 119 nucleotides BACOVA_04183 and BACOVA_04184 overlap by 4 nucleotides BACOVA_04184 and BACOVA_04185 overlap by 14 nucleotides
BACOVA_04182: BACOVA_04182 - PKD domain protein, at 55,355 to 56,926
_04182
BACOVA_04183: BACOVA_04183 - hypothetical protein, at 57,046 to 57,228
_04183
BACOVA_04184: BACOVA_04184 - BNR/Asp-box repeat protein, at 57,225 to 58,385
_04184
BACOVA_04185: BACOVA_04185 - SusD family protein, at 58,372 to 59,826
_04185
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 56.261 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.272 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.274 kb on + strand, within BACOVA_04182 at 56.275 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.287 kb on - strand, within BACOVA_04182 at 56.347 kb on + strand, within BACOVA_04182 at 56.350 kb on - strand, within BACOVA_04182 at 56.360 kb on + strand, within BACOVA_04182 at 56.401 kb on + strand, within BACOVA_04182 at 56.407 kb on + strand, within BACOVA_04182 at 56.455 kb on + strand, within BACOVA_04182 at 56.516 kb on - strand, within BACOVA_04182 at 56.536 kb on + strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.540 kb on - strand, within BACOVA_04182 at 56.557 kb on + strand, within BACOVA_04182 at 56.558 kb on - strand, within BACOVA_04182 at 56.585 kb on + strand, within BACOVA_04182 at 56.586 kb on - strand, within BACOVA_04182 at 56.609 kb on - strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.611 kb on + strand, within BACOVA_04182 at 56.640 kb on + strand, within BACOVA_04182 at 56.687 kb on - strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.691 kb on + strand, within BACOVA_04182 at 56.712 kb on - strand, within BACOVA_04182 at 56.759 kb on - strand, within BACOVA_04182 at 56.774 kb on - strand at 56.774 kb on - strand at 56.777 kb on - strand at 56.843 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.879 kb on + strand at 56.883 kb on - strand at 56.935 kb on + strand at 56.936 kb on - strand at 56.936 kb on - strand at 57.047 kb on + strand at 57.048 kb on - strand at 57.075 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.077 kb on + strand, within BACOVA_04183 at 57.079 kb on + strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.080 kb on - strand, within BACOVA_04183 at 57.086 kb on + strand, within BACOVA_04183 at 57.111 kb on + strand, within BACOVA_04183 at 57.128 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.136 kb on - strand, within BACOVA_04183 at 57.139 kb on + strand, within BACOVA_04183 at 57.148 kb on + strand, within BACOVA_04183 at 57.154 kb on + strand, within BACOVA_04183 at 57.208 kb on + strand, within BACOVA_04183 at 57.212 kb on + strand at 57.212 kb on + strand at 57.212 kb on + strand at 57.213 kb on - strand at 57.213 kb on - strand at 57.296 kb on - strand at 57.297 kb on + strand at 57.298 kb on - strand at 57.298 kb on - strand at 57.300 kb on - strand at 57.358 kb on + strand, within BACOVA_04184 at 57.365 kb on + strand, within BACOVA_04184 at 57.366 kb on - strand, within BACOVA_04184 at 57.407 kb on + strand, within BACOVA_04184 at 57.411 kb on - strand, within BACOVA_04184 at 57.416 kb on + strand, within BACOVA_04184 at 57.419 kb on + strand, within BACOVA_04184 at 57.420 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.423 kb on - strand, within BACOVA_04184 at 57.468 kb on + strand, within BACOVA_04184 at 57.469 kb on - strand, within BACOVA_04184 at 57.474 kb on + strand, within BACOVA_04184 at 57.475 kb on - strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.477 kb on + strand, within BACOVA_04184 at 57.480 kb on - strand, within BACOVA_04184 at 57.482 kb on + strand, within BACOVA_04184 at 57.483 kb on - strand, within BACOVA_04184 at 57.494 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.537 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.539 kb on + strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.540 kb on - strand, within BACOVA_04184 at 57.554 kb on + strand, within BACOVA_04184 at 57.557 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.603 kb on + strand, within BACOVA_04184 at 57.700 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.704 kb on + strand, within BACOVA_04184 at 57.723 kb on + strand, within BACOVA_04184 at 57.743 kb on + strand, within BACOVA_04184 at 57.747 kb on - strand, within BACOVA_04184 at 57.751 kb on + strand, within BACOVA_04184 at 57.752 kb on - strand, within BACOVA_04184 at 57.765 kb on + strand, within BACOVA_04184 at 57.901 kb on + strand, within BACOVA_04184 at 57.906 kb on - strand, within BACOVA_04184 at 57.907 kb on + strand, within BACOVA_04184 at 57.908 kb on - strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.910 kb on + strand, within BACOVA_04184 at 57.998 kb on + strand, within BACOVA_04184 at 58.062 kb on + strand, within BACOVA_04184 at 58.071 kb on - strand, within BACOVA_04184 at 58.116 kb on + strand, within BACOVA_04184 at 58.117 kb on - strand, within BACOVA_04184 at 58.171 kb on - strand, within BACOVA_04184 at 58.175 kb on + strand, within BACOVA_04184 at 58.176 kb on - strand, within BACOVA_04184 at 58.178 kb on + strand, within BACOVA_04184 at 58.203 kb on + strand, within BACOVA_04184 at 58.204 kb on - strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.208 kb on + strand, within BACOVA_04184 at 58.209 kb on - strand, within BACOVA_04184 at 58.219 kb on + strand, within BACOVA_04184 at 58.239 kb on - strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.240 kb on + strand, within BACOVA_04184 at 58.241 kb on - strand, within BACOVA_04184 at 58.246 kb on + strand, within BACOVA_04184 at 58.247 kb on - strand, within BACOVA_04184 at 58.299 kb on - strand at 58.338 kb on + strand at 58.356 kb on + strand at 58.356 kb on + strand at 58.357 kb on - strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.358 kb on + strand at 58.359 kb on - strand at 58.359 kb on - strand at 58.413 kb on + strand at 58.414 kb on - strand at 58.417 kb on - strand at 58.417 kb on - strand at 58.447 kb on + strand at 58.459 kb on - strand at 58.461 kb on + strand at 58.471 kb on - strand at 58.471 kb on - strand at 58.503 kb on - strand at 58.503 kb on - strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.510 kb on + strand at 58.511 kb on - strand at 58.566 kb on - strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.567 kb on + strand, within BACOVA_04185 at 58.620 kb on + strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.632 kb on - strand, within BACOVA_04185 at 58.635 kb on + strand, within BACOVA_04185 at 58.636 kb on - strand, within BACOVA_04185 at 58.639 kb on + strand, within BACOVA_04185 at 58.666 kb on + strand, within BACOVA_04185 at 58.706 kb on + strand, within BACOVA_04185 at 58.727 kb on + strand, within BACOVA_04185 at 58.752 kb on + strand, within BACOVA_04185 at 58.767 kb on - strand, within BACOVA_04185 at 58.770 kb on + strand, within BACOVA_04185 at 58.771 kb on - strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.842 kb on + strand, within BACOVA_04185 at 58.843 kb on - strand, within BACOVA_04185 at 58.852 kb on - strand, within BACOVA_04185 at 58.873 kb on - strand, within BACOVA_04185 at 58.890 kb on - strand, within BACOVA_04185 at 58.926 kb on + strand, within BACOVA_04185 at 58.949 kb on + strand, within BACOVA_04185 at 58.987 kb on + strand, within BACOVA_04185 at 59.014 kb on - strand, within BACOVA_04185 at 59.057 kb on - strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.076 kb on + strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.077 kb on - strand, within BACOVA_04185 at 59.079 kb on + strand, within BACOVA_04185 at 59.089 kb on - strand, within BACOVA_04185 at 59.121 kb on + strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.122 kb on - strand, within BACOVA_04185 at 59.145 kb on + strand, within BACOVA_04185 at 59.219 kb on + strand, within BACOVA_04185 at 59.302 kb on + strand, within BACOVA_04185 at 59.303 kb on - strand, within BACOVA_04185 at 59.342 kb on - strand, within BACOVA_04185 at 59.353 kb on - strand, within BACOVA_04185 at 59.380 kb on + strand, within BACOVA_04185 at 59.381 kb on - strand, within BACOVA_04185 at 59.382 kb on + strand, within BACOVA_04185
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 56,261 + BACOVA_04182 0.58 +0.4 56,272 + BACOVA_04182 0.58 -0.1 56,272 + BACOVA_04182 0.58 -1.7 56,274 + BACOVA_04182 0.58 -1.1 56,274 + BACOVA_04182 0.58 -0.2 56,275 - BACOVA_04182 0.59 -0.3 56,287 - BACOVA_04182 0.59 -0.1 56,287 - BACOVA_04182 0.59 -0.1 56,347 + BACOVA_04182 0.63 -0.9 56,350 - BACOVA_04182 0.63 +0.2 56,360 + BACOVA_04182 0.64 -1.0 56,401 + BACOVA_04182 0.67 -0.1 56,407 + BACOVA_04182 0.67 -1.1 56,455 + BACOVA_04182 0.70 -0.1 56,516 - BACOVA_04182 0.74 -0.2 56,536 + BACOVA_04182 0.75 -0.6 56,540 - BACOVA_04182 0.75 -0.4 56,540 - BACOVA_04182 0.75 -0.1 56,557 + BACOVA_04182 0.76 -0.1 56,558 - BACOVA_04182 0.77 -2.4 56,585 + BACOVA_04182 0.78 +1.3 56,586 - BACOVA_04182 0.78 -0.4 56,609 - BACOVA_04182 0.80 +0.6 56,611 + BACOVA_04182 0.80 +1.0 56,611 + BACOVA_04182 0.80 +0.2 56,611 + BACOVA_04182 0.80 -0.3 56,611 + BACOVA_04182 0.80 -0.7 56,611 + BACOVA_04182 0.80 -1.2 56,611 + BACOVA_04182 0.80 -0.8 56,611 + BACOVA_04182 0.80 -0.1 56,611 + BACOVA_04182 0.80 -0.5 56,640 + BACOVA_04182 0.82 -0.4 56,687 - BACOVA_04182 0.85 +0.3 56,691 + BACOVA_04182 0.85 +0.8 56,691 + BACOVA_04182 0.85 +0.6 56,712 - BACOVA_04182 0.86 -1.5 56,759 - BACOVA_04182 0.89 -2.1 56,774 - -0.8 56,774 - -0.9 56,777 - -0.7 56,843 + -1.7 56,879 + -1.3 56,879 + -0.6 56,879 + -0.1 56,883 - +0.9 56,935 + +1.7 56,936 - -0.8 56,936 - -1.3 57,047 + -1.3 57,048 - -0.4 57,075 + BACOVA_04183 0.16 +0.3 57,077 + BACOVA_04183 0.17 +0.7 57,077 + BACOVA_04183 0.17 +0.2 57,077 + BACOVA_04183 0.17 +1.7 57,077 + BACOVA_04183 0.17 +1.2 57,077 + BACOVA_04183 0.17 +0.3 57,079 + BACOVA_04183 0.18 -0.2 57,080 - BACOVA_04183 0.19 -0.8 57,080 - BACOVA_04183 0.19 -2.2 57,080 - BACOVA_04183 0.19 -0.1 57,086 + BACOVA_04183 0.22 +1.4 57,111 + BACOVA_04183 0.36 +0.9 57,128 - BACOVA_04183 0.45 -3.5 57,136 - BACOVA_04183 0.49 +0.0 57,136 - BACOVA_04183 0.49 +0.2 57,136 - BACOVA_04183 0.49 +0.4 57,139 + BACOVA_04183 0.51 -0.8 57,148 + BACOVA_04183 0.56 +0.0 57,154 + BACOVA_04183 0.59 +0.9 57,208 + BACOVA_04183 0.89 -0.3 57,212 + -0.4 57,212 + -0.5 57,212 + -0.2 57,213 - +1.1 57,213 - -1.8 57,296 - -2.3 57,297 + +1.6 57,298 - -1.1 57,298 - -1.1 57,300 - -1.0 57,358 + BACOVA_04184 0.11 +1.1 57,365 + BACOVA_04184 0.12 -0.1 57,366 - BACOVA_04184 0.12 -1.5 57,407 + BACOVA_04184 0.16 +0.5 57,411 - BACOVA_04184 0.16 +1.7 57,416 + BACOVA_04184 0.16 +0.2 57,419 + BACOVA_04184 0.17 -1.1 57,420 - BACOVA_04184 0.17 -0.4 57,423 - BACOVA_04184 0.17 -0.7 57,423 - BACOVA_04184 0.17 -0.4 57,468 + BACOVA_04184 0.21 +0.6 57,469 - BACOVA_04184 0.21 -1.0 57,474 + BACOVA_04184 0.21 -1.1 57,475 - BACOVA_04184 0.22 -0.8 57,477 + BACOVA_04184 0.22 -2.1 57,477 + BACOVA_04184 0.22 -0.8 57,480 - BACOVA_04184 0.22 -0.1 57,482 + BACOVA_04184 0.22 -0.6 57,483 - BACOVA_04184 0.22 -0.4 57,494 + BACOVA_04184 0.23 +0.5 57,537 + BACOVA_04184 0.27 +1.7 57,537 + BACOVA_04184 0.27 +0.1 57,539 + BACOVA_04184 0.27 +0.2 57,539 + BACOVA_04184 0.27 -0.1 57,540 - BACOVA_04184 0.27 +1.2 57,540 - BACOVA_04184 0.27 +1.2 57,554 + BACOVA_04184 0.28 -0.3 57,557 + BACOVA_04184 0.29 +0.2 57,603 + BACOVA_04184 0.33 -1.1 57,603 + BACOVA_04184 0.33 +0.7 57,603 + BACOVA_04184 0.33 -0.3 57,700 + BACOVA_04184 0.41 -0.2 57,704 + BACOVA_04184 0.41 -0.0 57,704 + BACOVA_04184 0.41 +0.8 57,723 + BACOVA_04184 0.43 +0.5 57,743 + BACOVA_04184 0.45 -0.0 57,747 - BACOVA_04184 0.45 +1.8 57,751 + BACOVA_04184 0.45 -1.3 57,752 - BACOVA_04184 0.45 -0.0 57,765 + BACOVA_04184 0.47 +0.4 57,901 + BACOVA_04184 0.58 +0.3 57,906 - BACOVA_04184 0.59 +1.4 57,907 + BACOVA_04184 0.59 -2.6 57,908 - BACOVA_04184 0.59 +0.6 57,910 + BACOVA_04184 0.59 -0.9 57,910 + BACOVA_04184 0.59 -1.0 57,998 + BACOVA_04184 0.67 -0.1 58,062 + BACOVA_04184 0.72 +1.8 58,071 - BACOVA_04184 0.73 -0.1 58,116 + BACOVA_04184 0.77 +0.7 58,117 - BACOVA_04184 0.77 -0.6 58,171 - BACOVA_04184 0.81 -2.5 58,175 + BACOVA_04184 0.82 +0.5 58,176 - BACOVA_04184 0.82 -0.5 58,178 + BACOVA_04184 0.82 -0.5 58,203 + BACOVA_04184 0.84 +0.5 58,204 - BACOVA_04184 0.84 +0.1 58,208 + BACOVA_04184 0.85 -0.5 58,208 + BACOVA_04184 0.85 -1.3 58,209 - BACOVA_04184 0.85 -0.9 58,219 + BACOVA_04184 0.86 +0.2 58,239 - BACOVA_04184 0.87 +0.6 58,240 + BACOVA_04184 0.87 +0.5 58,240 + BACOVA_04184 0.87 -0.9 58,241 - BACOVA_04184 0.88 -0.3 58,246 + BACOVA_04184 0.88 +1.0 58,247 - BACOVA_04184 0.88 +0.5 58,299 - -1.7 58,338 + +0.9 58,356 + -1.1 58,356 + -0.5 58,357 - -1.0 58,358 + -2.7 58,358 + -1.2 58,358 + -0.5 58,359 - -1.1 58,359 - +2.2 58,413 + +0.1 58,414 - +1.2 58,417 - -1.7 58,417 - +1.3 58,447 + +1.0 58,459 - -0.8 58,461 + -1.5 58,471 - -1.1 58,471 - +1.3 58,503 - +0.6 58,503 - +0.8 58,510 + -1.6 58,510 + +0.1 58,510 + -0.6 58,511 - +0.9 58,566 - BACOVA_04185 0.13 -1.1 58,567 + BACOVA_04185 0.13 +0.7 58,567 + BACOVA_04185 0.13 -0.7 58,620 + BACOVA_04185 0.17 -1.7 58,632 - BACOVA_04185 0.18 -0.6 58,632 - BACOVA_04185 0.18 -1.0 58,632 - BACOVA_04185 0.18 +0.4 58,635 + BACOVA_04185 0.18 +0.7 58,636 - BACOVA_04185 0.18 -2.6 58,639 + BACOVA_04185 0.18 -0.5 58,666 + BACOVA_04185 0.20 -2.0 58,706 + BACOVA_04185 0.23 +0.6 58,727 + BACOVA_04185 0.24 -1.4 58,752 + BACOVA_04185 0.26 +2.1 58,767 - BACOVA_04185 0.27 +0.1 58,770 + BACOVA_04185 0.27 -0.2 58,771 - BACOVA_04185 0.27 +0.6 58,842 + BACOVA_04185 0.32 +0.9 58,842 + BACOVA_04185 0.32 -1.5 58,843 - BACOVA_04185 0.32 -2.1 58,852 - BACOVA_04185 0.33 -0.3 58,873 - BACOVA_04185 0.34 -0.9 58,890 - BACOVA_04185 0.36 -2.6 58,926 + BACOVA_04185 0.38 -0.3 58,949 + BACOVA_04185 0.40 -2.1 58,987 + BACOVA_04185 0.42 -0.6 59,014 - BACOVA_04185 0.44 -2.0 59,057 - BACOVA_04185 0.47 +1.5 59,076 + BACOVA_04185 0.48 +0.1 59,076 + BACOVA_04185 0.48 -0.2 59,077 - BACOVA_04185 0.48 +0.6 59,077 - BACOVA_04185 0.48 +1.1 59,079 + BACOVA_04185 0.49 +0.8 59,089 - BACOVA_04185 0.49 -0.4 59,121 + BACOVA_04185 0.51 -0.3 59,122 - BACOVA_04185 0.52 +0.6 59,122 - BACOVA_04185 0.52 +0.6 59,145 + BACOVA_04185 0.53 -0.3 59,219 + BACOVA_04185 0.58 +1.0 59,302 + BACOVA_04185 0.64 -0.5 59,303 - BACOVA_04185 0.64 -0.8 59,342 - BACOVA_04185 0.67 -2.4 59,353 - BACOVA_04185 0.67 +0.6 59,380 + BACOVA_04185 0.69 +0.1 59,381 - BACOVA_04185 0.69 +0.4 59,382 + BACOVA_04185 0.69 -1.5
Or see this region's nucleotide sequence