Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03624 and BACOVA_03625 are separated by 173 nucleotides BACOVA_03625 and BACOVA_03626 are separated by 211 nucleotides BACOVA_03626 and BACOVA_03627 are separated by 59 nucleotides
BACOVA_03624: BACOVA_03624 - hypothetical protein, at 431,810 to 432,970
_03624
BACOVA_03625: BACOVA_03625 - hypothetical protein, at 433,144 to 433,254
_03625
BACOVA_03626: BACOVA_03626 - hypothetical protein, at 433,466 to 434,911
_03626
BACOVA_03627: BACOVA_03627 - glycosyl hydrolase family 76, at 434,971 to 436,101
_03627
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 432.493 kb on - strand, within BACOVA_03624 at 432.493 kb on - strand, within BACOVA_03624 at 432.500 kb on + strand, within BACOVA_03624 at 432.501 kb on - strand, within BACOVA_03624 at 432.501 kb on - strand, within BACOVA_03624 at 432.501 kb on - strand, within BACOVA_03624 at 432.501 kb on - strand, within BACOVA_03624 at 432.507 kb on - strand, within BACOVA_03624 at 432.593 kb on + strand, within BACOVA_03624 at 432.671 kb on - strand, within BACOVA_03624 at 432.686 kb on - strand, within BACOVA_03624 at 432.686 kb on - strand, within BACOVA_03624 at 432.723 kb on + strand, within BACOVA_03624 at 432.724 kb on - strand, within BACOVA_03624 at 432.730 kb on + strand, within BACOVA_03624 at 432.730 kb on + strand, within BACOVA_03624 at 432.811 kb on + strand, within BACOVA_03624 at 432.819 kb on - strand, within BACOVA_03624 at 432.819 kb on - strand, within BACOVA_03624 at 432.819 kb on - strand, within BACOVA_03624 at 432.932 kb on - strand at 432.934 kb on + strand at 432.962 kb on - strand at 432.971 kb on - strand at 432.971 kb on - strand at 432.975 kb on + strand at 432.975 kb on + strand at 432.975 kb on + strand at 432.975 kb on + strand at 432.975 kb on + strand at 432.976 kb on - strand at 432.976 kb on - strand at 433.003 kb on - strand at 433.003 kb on - strand at 433.011 kb on + strand at 433.011 kb on + strand at 433.012 kb on - strand at 433.012 kb on - strand at 433.016 kb on - strand at 433.029 kb on + strand at 433.034 kb on - strand at 433.084 kb on - strand at 433.186 kb on + strand, within BACOVA_03625 at 433.186 kb on + strand, within BACOVA_03625 at 433.187 kb on - strand, within BACOVA_03625 at 433.187 kb on - strand, within BACOVA_03625 at 433.187 kb on - strand, within BACOVA_03625 at 433.206 kb on + strand, within BACOVA_03625 at 433.228 kb on + strand, within BACOVA_03625 at 433.229 kb on - strand, within BACOVA_03625 at 433.258 kb on + strand at 433.426 kb on + strand at 433.459 kb on + strand at 433.459 kb on + strand at 433.460 kb on - strand at 433.467 kb on + strand at 433.477 kb on + strand at 433.478 kb on - strand at 433.515 kb on - strand at 433.538 kb on - strand at 433.624 kb on + strand, within BACOVA_03626 at 433.691 kb on - strand, within BACOVA_03626 at 433.694 kb on - strand, within BACOVA_03626 at 433.768 kb on - strand, within BACOVA_03626 at 433.774 kb on + strand, within BACOVA_03626 at 433.774 kb on + strand, within BACOVA_03626 at 433.775 kb on - strand, within BACOVA_03626 at 433.787 kb on + strand, within BACOVA_03626 at 433.813 kb on + strand, within BACOVA_03626 at 433.842 kb on + strand, within BACOVA_03626 at 433.842 kb on + strand, within BACOVA_03626 at 433.884 kb on - strand, within BACOVA_03626 at 433.932 kb on + strand, within BACOVA_03626 at 433.947 kb on + strand, within BACOVA_03626 at 433.993 kb on + strand, within BACOVA_03626 at 433.993 kb on + strand, within BACOVA_03626 at 433.993 kb on + strand, within BACOVA_03626 at 433.994 kb on - strand, within BACOVA_03626 at 433.997 kb on - strand, within BACOVA_03626 at 434.061 kb on + strand, within BACOVA_03626 at 434.066 kb on + strand, within BACOVA_03626 at 434.157 kb on - strand, within BACOVA_03626 at 434.157 kb on - strand, within BACOVA_03626 at 434.188 kb on + strand, within BACOVA_03626 at 434.209 kb on - strand, within BACOVA_03626 at 434.309 kb on + strand, within BACOVA_03626 at 434.310 kb on - strand, within BACOVA_03626 at 434.312 kb on - strand, within BACOVA_03626 at 434.343 kb on + strand, within BACOVA_03626 at 434.357 kb on - strand, within BACOVA_03626 at 434.559 kb on + strand, within BACOVA_03626 at 434.560 kb on - strand, within BACOVA_03626 at 434.567 kb on + strand, within BACOVA_03626 at 434.567 kb on + strand, within BACOVA_03626 at 434.568 kb on - strand, within BACOVA_03626 at 434.614 kb on + strand, within BACOVA_03626 at 434.627 kb on - strand, within BACOVA_03626 at 434.653 kb on + strand, within BACOVA_03626 at 434.653 kb on + strand, within BACOVA_03626 at 434.653 kb on + strand, within BACOVA_03626 at 434.654 kb on - strand, within BACOVA_03626 at 434.811 kb on + strand at 434.847 kb on - strand at 434.857 kb on + strand at 434.858 kb on - strand at 434.904 kb on - strand at 434.904 kb on - strand at 434.914 kb on + strand at 434.914 kb on + strand at 434.973 kb on - strand at 435.022 kb on - strand at 435.059 kb on - strand at 435.147 kb on + strand, within BACOVA_03627 at 435.148 kb on - strand, within BACOVA_03627 at 435.172 kb on + strand, within BACOVA_03627 at 435.322 kb on + strand, within BACOVA_03627 at 435.360 kb on - strand, within BACOVA_03627 at 435.394 kb on - strand, within BACOVA_03627 at 435.405 kb on - strand, within BACOVA_03627 at 435.450 kb on - strand, within BACOVA_03627 at 435.479 kb on - strand, within BACOVA_03627 at 435.540 kb on + strand, within BACOVA_03627 at 435.540 kb on + strand, within BACOVA_03627 at 435.609 kb on - strand, within BACOVA_03627 at 435.614 kb on + strand, within BACOVA_03627 at 435.614 kb on + strand, within BACOVA_03627 at 435.614 kb on + strand, within BACOVA_03627 at 435.615 kb on - strand, within BACOVA_03627 at 435.615 kb on - strand, within BACOVA_03627 at 435.668 kb on + strand, within BACOVA_03627 at 435.702 kb on + strand, within BACOVA_03627 at 435.713 kb on + strand, within BACOVA_03627 at 435.714 kb on - strand, within BACOVA_03627 at 435.782 kb on + strand, within BACOVA_03627 at 435.782 kb on + strand, within BACOVA_03627 at 435.851 kb on + strand, within BACOVA_03627 at 435.851 kb on + strand, within BACOVA_03627 at 435.852 kb on - strand, within BACOVA_03627
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 432,493 - BACOVA_03624 0.59 -0.3 432,493 - BACOVA_03624 0.59 -0.3 432,500 + BACOVA_03624 0.59 +0.2 432,501 - BACOVA_03624 0.60 -0.1 432,501 - BACOVA_03624 0.60 +1.3 432,501 - BACOVA_03624 0.60 -0.0 432,501 - BACOVA_03624 0.60 -0.2 432,507 - BACOVA_03624 0.60 -1.4 432,593 + BACOVA_03624 0.67 +1.2 432,671 - BACOVA_03624 0.74 -0.2 432,686 - BACOVA_03624 0.75 -1.8 432,686 - BACOVA_03624 0.75 -0.5 432,723 + BACOVA_03624 0.79 +0.3 432,724 - BACOVA_03624 0.79 -0.4 432,730 + BACOVA_03624 0.79 +0.9 432,730 + BACOVA_03624 0.79 -0.5 432,811 + BACOVA_03624 0.86 -0.2 432,819 - BACOVA_03624 0.87 -2.3 432,819 - BACOVA_03624 0.87 +1.0 432,819 - BACOVA_03624 0.87 -0.6 432,932 - -1.1 432,934 + -2.3 432,962 - -1.2 432,971 - +0.1 432,971 - -2.2 432,975 + -0.6 432,975 + -0.0 432,975 + +0.1 432,975 + +0.5 432,975 + -2.7 432,976 - -0.5 432,976 - -0.5 433,003 - -0.4 433,003 - -1.5 433,011 + -0.5 433,011 + -1.1 433,012 - -1.2 433,012 - -0.9 433,016 - -0.2 433,029 + -0.4 433,034 - -0.1 433,084 - +0.1 433,186 + BACOVA_03625 0.38 -0.2 433,186 + BACOVA_03625 0.38 -0.5 433,187 - BACOVA_03625 0.39 -0.2 433,187 - BACOVA_03625 0.39 -0.7 433,187 - BACOVA_03625 0.39 -0.1 433,206 + BACOVA_03625 0.56 +0.6 433,228 + BACOVA_03625 0.76 +0.0 433,229 - BACOVA_03625 0.77 +0.4 433,258 + +0.8 433,426 + -0.3 433,459 + +0.2 433,459 + +0.4 433,460 - -0.6 433,467 + -0.1 433,477 + -1.3 433,478 - -0.2 433,515 - -0.6 433,538 - +0.6 433,624 + BACOVA_03626 0.11 +0.4 433,691 - BACOVA_03626 0.16 -1.5 433,694 - BACOVA_03626 0.16 +1.2 433,768 - BACOVA_03626 0.21 -1.6 433,774 + BACOVA_03626 0.21 +2.2 433,774 + BACOVA_03626 0.21 +0.8 433,775 - BACOVA_03626 0.21 +1.7 433,787 + BACOVA_03626 0.22 -0.3 433,813 + BACOVA_03626 0.24 -0.7 433,842 + BACOVA_03626 0.26 +0.4 433,842 + BACOVA_03626 0.26 -0.3 433,884 - BACOVA_03626 0.29 -1.4 433,932 + BACOVA_03626 0.32 -0.9 433,947 + BACOVA_03626 0.33 -0.2 433,993 + BACOVA_03626 0.36 -1.8 433,993 + BACOVA_03626 0.36 -1.2 433,993 + BACOVA_03626 0.36 -0.4 433,994 - BACOVA_03626 0.37 +0.2 433,997 - BACOVA_03626 0.37 -1.1 434,061 + BACOVA_03626 0.41 -1.3 434,066 + BACOVA_03626 0.41 -1.4 434,157 - BACOVA_03626 0.48 -1.1 434,157 - BACOVA_03626 0.48 +0.4 434,188 + BACOVA_03626 0.50 +0.8 434,209 - BACOVA_03626 0.51 -1.2 434,309 + BACOVA_03626 0.58 -1.4 434,310 - BACOVA_03626 0.58 +1.4 434,312 - BACOVA_03626 0.59 -1.2 434,343 + BACOVA_03626 0.61 -1.0 434,357 - BACOVA_03626 0.62 +0.8 434,559 + BACOVA_03626 0.76 -0.6 434,560 - BACOVA_03626 0.76 -0.2 434,567 + BACOVA_03626 0.76 -0.4 434,567 + BACOVA_03626 0.76 -1.1 434,568 - BACOVA_03626 0.76 -0.2 434,614 + BACOVA_03626 0.79 -1.3 434,627 - BACOVA_03626 0.80 +2.0 434,653 + BACOVA_03626 0.82 -0.4 434,653 + BACOVA_03626 0.82 -0.7 434,653 + BACOVA_03626 0.82 -0.2 434,654 - BACOVA_03626 0.82 -0.7 434,811 + -1.1 434,847 - -0.2 434,857 + -1.3 434,858 - -0.4 434,904 - +0.3 434,904 - +0.5 434,914 + -2.5 434,914 + +0.4 434,973 - +1.4 435,022 - -0.2 435,059 - -0.6 435,147 + BACOVA_03627 0.16 -1.1 435,148 - BACOVA_03627 0.16 -1.9 435,172 + BACOVA_03627 0.18 -0.5 435,322 + BACOVA_03627 0.31 -0.5 435,360 - BACOVA_03627 0.34 -0.3 435,394 - BACOVA_03627 0.37 -3.0 435,405 - BACOVA_03627 0.38 -0.9 435,450 - BACOVA_03627 0.42 -1.7 435,479 - BACOVA_03627 0.45 +1.0 435,540 + BACOVA_03627 0.50 -1.2 435,540 + BACOVA_03627 0.50 -2.0 435,609 - BACOVA_03627 0.56 -1.7 435,614 + BACOVA_03627 0.57 +0.1 435,614 + BACOVA_03627 0.57 -0.4 435,614 + BACOVA_03627 0.57 -3.2 435,615 - BACOVA_03627 0.57 +0.9 435,615 - BACOVA_03627 0.57 -0.3 435,668 + BACOVA_03627 0.62 +0.8 435,702 + BACOVA_03627 0.65 -2.9 435,713 + BACOVA_03627 0.66 -1.1 435,714 - BACOVA_03627 0.66 -1.8 435,782 + BACOVA_03627 0.72 -1.5 435,782 + BACOVA_03627 0.72 +0.2 435,851 + BACOVA_03627 0.78 -1.7 435,851 + BACOVA_03627 0.78 -1.4 435,852 - BACOVA_03627 0.78 +0.2
Or see this region's nucleotide sequence