Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03326 and BACOVA_03327 are separated by 230 nucleotides BACOVA_03327 and BACOVA_03328 are separated by 18 nucleotides
BACOVA_03326: BACOVA_03326 - hypothetical protein, at 11,757 to 14,318
_03326
BACOVA_03327: BACOVA_03327 - arylsulfatase, at 14,549 to 16,141
_03327
BACOVA_03328: BACOVA_03328 - arylsulfatase, at 16,160 to 17,530
_03328
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 13.595 kb on + strand, within BACOVA_03326 at 13.595 kb on + strand, within BACOVA_03326 at 13.664 kb on - strand, within BACOVA_03326 at 13.683 kb on + strand, within BACOVA_03326 at 13.683 kb on + strand, within BACOVA_03326 at 13.684 kb on - strand, within BACOVA_03326 at 13.686 kb on - strand, within BACOVA_03326 at 13.744 kb on - strand, within BACOVA_03326 at 13.841 kb on + strand, within BACOVA_03326 at 13.842 kb on - strand, within BACOVA_03326 at 13.842 kb on - strand, within BACOVA_03326 at 13.842 kb on - strand, within BACOVA_03326 at 13.886 kb on + strand, within BACOVA_03326 at 13.941 kb on + strand, within BACOVA_03326 at 13.941 kb on + strand, within BACOVA_03326 at 13.942 kb on - strand, within BACOVA_03326 at 13.942 kb on - strand, within BACOVA_03326 at 13.948 kb on + strand, within BACOVA_03326 at 13.952 kb on - strand, within BACOVA_03326 at 14.024 kb on + strand, within BACOVA_03326 at 14.031 kb on + strand, within BACOVA_03326 at 14.032 kb on - strand, within BACOVA_03326 at 14.032 kb on - strand, within BACOVA_03326 at 14.033 kb on + strand, within BACOVA_03326 at 14.034 kb on - strand, within BACOVA_03326 at 14.059 kb on - strand, within BACOVA_03326 at 14.059 kb on - strand, within BACOVA_03326 at 14.063 kb on - strand at 14.114 kb on - strand at 14.114 kb on - strand at 14.132 kb on + strand at 14.143 kb on + strand at 14.143 kb on + strand at 14.144 kb on - strand at 14.146 kb on + strand at 14.153 kb on + strand at 14.153 kb on + strand at 14.170 kb on + strand at 14.222 kb on - strand at 14.222 kb on - strand at 14.232 kb on + strand at 14.233 kb on - strand at 14.235 kb on - strand at 14.265 kb on + strand at 14.266 kb on - strand at 14.266 kb on - strand at 14.266 kb on - strand at 14.324 kb on + strand at 14.355 kb on - strand at 14.355 kb on - strand at 14.390 kb on - strand at 14.413 kb on - strand at 14.413 kb on - strand at 14.419 kb on - strand at 14.439 kb on + strand at 14.439 kb on + strand at 14.439 kb on + strand at 14.440 kb on - strand at 14.441 kb on + strand at 14.457 kb on + strand at 14.457 kb on + strand at 14.457 kb on + strand at 14.457 kb on + strand at 14.458 kb on - strand at 14.458 kb on - strand at 14.458 kb on - strand at 14.458 kb on - strand at 14.459 kb on + strand at 14.460 kb on - strand at 14.461 kb on + strand at 14.542 kb on + strand at 14.542 kb on + strand at 14.543 kb on - strand at 14.546 kb on - strand at 14.546 kb on - strand at 14.547 kb on - strand at 14.640 kb on + strand at 14.641 kb on - strand at 14.686 kb on - strand at 14.686 kb on - strand at 14.698 kb on + strand at 14.742 kb on - strand, within BACOVA_03327 at 14.746 kb on + strand, within BACOVA_03327 at 14.747 kb on - strand, within BACOVA_03327 at 14.747 kb on - strand, within BACOVA_03327 at 14.773 kb on + strand, within BACOVA_03327 at 14.774 kb on - strand, within BACOVA_03327 at 14.774 kb on - strand, within BACOVA_03327 at 14.790 kb on + strand, within BACOVA_03327 at 14.790 kb on + strand, within BACOVA_03327 at 14.790 kb on + strand, within BACOVA_03327 at 14.791 kb on - strand, within BACOVA_03327 at 14.793 kb on - strand, within BACOVA_03327 at 14.947 kb on + strand, within BACOVA_03327 at 14.947 kb on + strand, within BACOVA_03327 at 14.948 kb on - strand, within BACOVA_03327 at 14.951 kb on + strand, within BACOVA_03327 at 14.951 kb on + strand, within BACOVA_03327 at 14.951 kb on + strand, within BACOVA_03327 at 14.952 kb on - strand, within BACOVA_03327 at 14.952 kb on - strand, within BACOVA_03327 at 15.053 kb on + strand, within BACOVA_03327 at 15.123 kb on - strand, within BACOVA_03327 at 15.127 kb on + strand, within BACOVA_03327 at 15.127 kb on + strand, within BACOVA_03327 at 15.127 kb on + strand, within BACOVA_03327 at 15.127 kb on + strand, within BACOVA_03327 at 15.142 kb on + strand, within BACOVA_03327 at 15.198 kb on + strand, within BACOVA_03327 at 15.198 kb on + strand, within BACOVA_03327 at 15.198 kb on + strand, within BACOVA_03327 at 15.198 kb on + strand, within BACOVA_03327 at 15.199 kb on - strand, within BACOVA_03327 at 15.200 kb on + strand, within BACOVA_03327 at 15.325 kb on + strand, within BACOVA_03327 at 15.326 kb on - strand, within BACOVA_03327 at 15.326 kb on - strand, within BACOVA_03327 at 15.326 kb on - strand, within BACOVA_03327 at 15.414 kb on + strand, within BACOVA_03327 at 15.434 kb on + strand, within BACOVA_03327 at 15.435 kb on - strand, within BACOVA_03327 at 15.435 kb on - strand, within BACOVA_03327 at 15.462 kb on - strand, within BACOVA_03327 at 15.464 kb on - strand, within BACOVA_03327 at 15.464 kb on - strand, within BACOVA_03327 at 15.469 kb on - strand, within BACOVA_03327 at 15.560 kb on + strand, within BACOVA_03327 at 15.610 kb on + strand, within BACOVA_03327 at 15.610 kb on + strand, within BACOVA_03327 at 15.611 kb on - strand, within BACOVA_03327 at 15.611 kb on - strand, within BACOVA_03327 at 15.611 kb on - strand, within BACOVA_03327 at 15.626 kb on + strand, within BACOVA_03327 at 15.627 kb on - strand, within BACOVA_03327 at 15.687 kb on - strand, within BACOVA_03327 at 15.697 kb on + strand, within BACOVA_03327 at 15.703 kb on + strand, within BACOVA_03327 at 15.742 kb on + strand, within BACOVA_03327 at 15.743 kb on - strand, within BACOVA_03327 at 15.787 kb on + strand, within BACOVA_03327 at 15.787 kb on + strand, within BACOVA_03327 at 15.833 kb on + strand, within BACOVA_03327 at 15.834 kb on - strand, within BACOVA_03327 at 15.853 kb on - strand, within BACOVA_03327 at 15.853 kb on - strand, within BACOVA_03327 at 15.865 kb on - strand, within BACOVA_03327 at 15.865 kb on - strand, within BACOVA_03327 at 15.886 kb on + strand, within BACOVA_03327 at 15.909 kb on + strand, within BACOVA_03327 at 15.917 kb on + strand, within BACOVA_03327 at 15.918 kb on - strand, within BACOVA_03327 at 15.918 kb on - strand, within BACOVA_03327 at 15.918 kb on - strand, within BACOVA_03327 at 15.919 kb on + strand, within BACOVA_03327 at 15.919 kb on + strand, within BACOVA_03327 at 15.920 kb on - strand, within BACOVA_03327 at 15.924 kb on - strand, within BACOVA_03327 at 15.924 kb on - strand, within BACOVA_03327 at 15.924 kb on - strand, within BACOVA_03327 at 15.944 kb on - strand, within BACOVA_03327 at 16.036 kb on + strand at 16.078 kb on - strand at 16.078 kb on - strand at 16.120 kb on - strand at 16.123 kb on + strand at 16.124 kb on - strand at 16.124 kb on - strand at 16.174 kb on - strand at 16.204 kb on + strand at 16.204 kb on + strand at 16.255 kb on - strand at 16.274 kb on + strand at 16.275 kb on - strand at 16.361 kb on + strand, within BACOVA_03328 at 16.362 kb on - strand, within BACOVA_03328 at 16.362 kb on - strand, within BACOVA_03328 at 16.401 kb on + strand, within BACOVA_03328 at 16.402 kb on - strand, within BACOVA_03328 at 16.403 kb on + strand, within BACOVA_03328 at 16.406 kb on - strand, within BACOVA_03328 at 16.413 kb on + strand, within BACOVA_03328 at 16.413 kb on + strand, within BACOVA_03328 at 16.479 kb on + strand, within BACOVA_03328 at 16.479 kb on + strand, within BACOVA_03328 at 16.505 kb on - strand, within BACOVA_03328 at 16.505 kb on - strand, within BACOVA_03328 at 16.565 kb on + strand, within BACOVA_03328 at 16.573 kb on + strand, within BACOVA_03328 at 16.682 kb on - strand, within BACOVA_03328 at 16.693 kb on + strand, within BACOVA_03328 at 16.741 kb on + strand, within BACOVA_03328 at 16.742 kb on - strand, within BACOVA_03328 at 16.742 kb on - strand, within BACOVA_03328 at 16.745 kb on + strand, within BACOVA_03328 at 16.745 kb on + strand, within BACOVA_03328 at 16.745 kb on + strand, within BACOVA_03328 at 16.746 kb on - strand, within BACOVA_03328 at 16.746 kb on - strand, within BACOVA_03328 at 16.746 kb on - strand, within BACOVA_03328 at 16.746 kb on - strand, within BACOVA_03328 at 16.746 kb on - strand, within BACOVA_03328 at 16.749 kb on + strand, within BACOVA_03328 at 16.749 kb on + strand, within BACOVA_03328 at 16.749 kb on + strand, within BACOVA_03328 at 16.750 kb on - strand, within BACOVA_03328 at 16.805 kb on - strand, within BACOVA_03328 at 16.876 kb on - strand, within BACOVA_03328 at 16.925 kb on + strand, within BACOVA_03328 at 16.925 kb on + strand, within BACOVA_03328 at 16.926 kb on - strand, within BACOVA_03328 at 16.926 kb on - strand, within BACOVA_03328 at 17.005 kb on - strand, within BACOVA_03328 at 17.005 kb on - strand, within BACOVA_03328 at 17.010 kb on - strand, within BACOVA_03328 at 17.017 kb on + strand, within BACOVA_03328 at 17.018 kb on - strand, within BACOVA_03328 at 17.039 kb on - strand, within BACOVA_03328 at 17.040 kb on + strand, within BACOVA_03328 at 17.041 kb on - strand, within BACOVA_03328 at 17.082 kb on + strand, within BACOVA_03328
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 13,595 + BACOVA_03326 0.72 -1.2 13,595 + BACOVA_03326 0.72 -0.0 13,664 - BACOVA_03326 0.74 -0.3 13,683 + BACOVA_03326 0.75 +1.1 13,683 + BACOVA_03326 0.75 -0.7 13,684 - BACOVA_03326 0.75 -1.4 13,686 - BACOVA_03326 0.75 +2.1 13,744 - BACOVA_03326 0.78 +1.2 13,841 + BACOVA_03326 0.81 -0.3 13,842 - BACOVA_03326 0.81 +0.5 13,842 - BACOVA_03326 0.81 -0.7 13,842 - BACOVA_03326 0.81 -0.5 13,886 + BACOVA_03326 0.83 -0.8 13,941 + BACOVA_03326 0.85 -0.6 13,941 + BACOVA_03326 0.85 +1.8 13,942 - BACOVA_03326 0.85 -0.5 13,942 - BACOVA_03326 0.85 +0.7 13,948 + BACOVA_03326 0.86 -1.1 13,952 - BACOVA_03326 0.86 -1.0 14,024 + BACOVA_03326 0.88 -2.2 14,031 + BACOVA_03326 0.89 -0.6 14,032 - BACOVA_03326 0.89 -0.1 14,032 - BACOVA_03326 0.89 +1.6 14,033 + BACOVA_03326 0.89 -0.4 14,034 - BACOVA_03326 0.89 +0.1 14,059 - BACOVA_03326 0.90 -1.4 14,059 - BACOVA_03326 0.90 +1.2 14,063 - -1.4 14,114 - -0.3 14,114 - +1.3 14,132 + -1.5 14,143 + -0.9 14,143 + +0.2 14,144 - +0.0 14,146 + -0.2 14,153 + +0.8 14,153 + +0.2 14,170 + +0.6 14,222 - -1.0 14,222 - -0.6 14,232 + +0.6 14,233 - -2.4 14,235 - +0.4 14,265 + -1.8 14,266 - -0.3 14,266 - +0.5 14,266 - -0.2 14,324 + +0.6 14,355 - -1.0 14,355 - +1.8 14,390 - +0.1 14,413 - -0.6 14,413 - -0.4 14,419 - -0.2 14,439 + -0.2 14,439 + -0.5 14,439 + -0.5 14,440 - +0.4 14,441 + -0.1 14,457 + -0.7 14,457 + +0.3 14,457 + -0.8 14,457 + -2.2 14,458 - -0.3 14,458 - +1.0 14,458 - +0.1 14,458 - +0.3 14,459 + -1.9 14,460 - -0.3 14,461 + +0.3 14,542 + +0.0 14,542 + -0.7 14,543 - -1.6 14,546 - -1.1 14,546 - -0.2 14,547 - -0.1 14,640 + -1.2 14,641 - -0.1 14,686 - -0.3 14,686 - +0.0 14,698 + +0.9 14,742 - BACOVA_03327 0.12 -0.8 14,746 + BACOVA_03327 0.12 +1.5 14,747 - BACOVA_03327 0.12 -2.2 14,747 - BACOVA_03327 0.12 -0.8 14,773 + BACOVA_03327 0.14 +1.0 14,774 - BACOVA_03327 0.14 +0.0 14,774 - BACOVA_03327 0.14 -1.4 14,790 + BACOVA_03327 0.15 -0.2 14,790 + BACOVA_03327 0.15 -0.2 14,790 + BACOVA_03327 0.15 +2.4 14,791 - BACOVA_03327 0.15 +1.1 14,793 - BACOVA_03327 0.15 -1.7 14,947 + BACOVA_03327 0.25 -2.0 14,947 + BACOVA_03327 0.25 -0.0 14,948 - BACOVA_03327 0.25 -1.7 14,951 + BACOVA_03327 0.25 +0.4 14,951 + BACOVA_03327 0.25 +1.8 14,951 + BACOVA_03327 0.25 -2.5 14,952 - BACOVA_03327 0.25 -1.4 14,952 - BACOVA_03327 0.25 +0.8 15,053 + BACOVA_03327 0.32 -1.1 15,123 - BACOVA_03327 0.36 +0.7 15,127 + BACOVA_03327 0.36 -0.1 15,127 + BACOVA_03327 0.36 +2.3 15,127 + BACOVA_03327 0.36 +0.8 15,127 + BACOVA_03327 0.36 -0.2 15,142 + BACOVA_03327 0.37 -0.9 15,198 + BACOVA_03327 0.41 -0.9 15,198 + BACOVA_03327 0.41 -0.5 15,198 + BACOVA_03327 0.41 -0.1 15,198 + BACOVA_03327 0.41 +0.8 15,199 - BACOVA_03327 0.41 +0.1 15,200 + BACOVA_03327 0.41 +0.7 15,325 + BACOVA_03327 0.49 +1.6 15,326 - BACOVA_03327 0.49 +1.2 15,326 - BACOVA_03327 0.49 -1.0 15,326 - BACOVA_03327 0.49 -0.7 15,414 + BACOVA_03327 0.54 +1.0 15,434 + BACOVA_03327 0.56 -1.6 15,435 - BACOVA_03327 0.56 -0.5 15,435 - BACOVA_03327 0.56 +0.4 15,462 - BACOVA_03327 0.57 +2.0 15,464 - BACOVA_03327 0.57 +2.2 15,464 - BACOVA_03327 0.57 +0.2 15,469 - BACOVA_03327 0.58 -1.1 15,560 + BACOVA_03327 0.63 -1.5 15,610 + BACOVA_03327 0.67 -1.5 15,610 + BACOVA_03327 0.67 -0.7 15,611 - BACOVA_03327 0.67 +1.7 15,611 - BACOVA_03327 0.67 +0.4 15,611 - BACOVA_03327 0.67 +0.3 15,626 + BACOVA_03327 0.68 +0.1 15,627 - BACOVA_03327 0.68 +0.3 15,687 - BACOVA_03327 0.71 +0.1 15,697 + BACOVA_03327 0.72 +0.2 15,703 + BACOVA_03327 0.72 -0.4 15,742 + BACOVA_03327 0.75 -0.8 15,743 - BACOVA_03327 0.75 -0.6 15,787 + BACOVA_03327 0.78 -2.1 15,787 + BACOVA_03327 0.78 -1.8 15,833 + BACOVA_03327 0.81 +0.1 15,834 - BACOVA_03327 0.81 -0.3 15,853 - BACOVA_03327 0.82 -0.0 15,853 - BACOVA_03327 0.82 +0.4 15,865 - BACOVA_03327 0.83 -1.9 15,865 - BACOVA_03327 0.83 -1.6 15,886 + BACOVA_03327 0.84 +0.3 15,909 + BACOVA_03327 0.85 -3.3 15,917 + BACOVA_03327 0.86 -0.3 15,918 - BACOVA_03327 0.86 +1.3 15,918 - BACOVA_03327 0.86 +1.3 15,918 - BACOVA_03327 0.86 -1.8 15,919 + BACOVA_03327 0.86 -0.9 15,919 + BACOVA_03327 0.86 -2.6 15,920 - BACOVA_03327 0.86 -0.4 15,924 - BACOVA_03327 0.86 -0.6 15,924 - BACOVA_03327 0.86 +0.2 15,924 - BACOVA_03327 0.86 -1.3 15,944 - BACOVA_03327 0.88 -0.0 16,036 + +0.4 16,078 - +1.8 16,078 - +0.8 16,120 - +0.6 16,123 + -0.9 16,124 - -1.1 16,124 - -0.1 16,174 - -0.1 16,204 + -0.3 16,204 + -0.1 16,255 - -0.2 16,274 + +1.4 16,275 - -2.9 16,361 + BACOVA_03328 0.15 -0.6 16,362 - BACOVA_03328 0.15 +1.4 16,362 - BACOVA_03328 0.15 -0.5 16,401 + BACOVA_03328 0.18 -0.3 16,402 - BACOVA_03328 0.18 -0.0 16,403 + BACOVA_03328 0.18 -0.4 16,406 - BACOVA_03328 0.18 +0.8 16,413 + BACOVA_03328 0.18 +0.4 16,413 + BACOVA_03328 0.18 -1.4 16,479 + BACOVA_03328 0.23 +0.8 16,479 + BACOVA_03328 0.23 +0.3 16,505 - BACOVA_03328 0.25 +0.4 16,505 - BACOVA_03328 0.25 +0.2 16,565 + BACOVA_03328 0.30 -1.2 16,573 + BACOVA_03328 0.30 +0.1 16,682 - BACOVA_03328 0.38 -0.9 16,693 + BACOVA_03328 0.39 -0.7 16,741 + BACOVA_03328 0.42 -1.0 16,742 - BACOVA_03328 0.42 -0.1 16,742 - BACOVA_03328 0.42 -1.0 16,745 + BACOVA_03328 0.43 +0.3 16,745 + BACOVA_03328 0.43 -0.0 16,745 + BACOVA_03328 0.43 -2.0 16,746 - BACOVA_03328 0.43 -0.4 16,746 - BACOVA_03328 0.43 +0.4 16,746 - BACOVA_03328 0.43 -0.8 16,746 - BACOVA_03328 0.43 +0.2 16,746 - BACOVA_03328 0.43 +0.0 16,749 + BACOVA_03328 0.43 +0.2 16,749 + BACOVA_03328 0.43 -1.4 16,749 + BACOVA_03328 0.43 +0.6 16,750 - BACOVA_03328 0.43 +1.5 16,805 - BACOVA_03328 0.47 +0.4 16,876 - BACOVA_03328 0.52 -1.8 16,925 + BACOVA_03328 0.56 -0.6 16,925 + BACOVA_03328 0.56 -1.2 16,926 - BACOVA_03328 0.56 -0.2 16,926 - BACOVA_03328 0.56 -0.9 17,005 - BACOVA_03328 0.62 -0.8 17,005 - BACOVA_03328 0.62 +0.5 17,010 - BACOVA_03328 0.62 -0.4 17,017 + BACOVA_03328 0.63 -0.3 17,018 - BACOVA_03328 0.63 -0.9 17,039 - BACOVA_03328 0.64 +0.1 17,040 + BACOVA_03328 0.64 -0.2 17,041 - BACOVA_03328 0.64 +0.4 17,082 + BACOVA_03328 0.67 -0.9
Or see this region's nucleotide sequence