Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03313

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03312 and BACOVA_03313 are separated by 193 nucleotidesBACOVA_03313 and BACOVA_03314 are separated by 51 nucleotides BACOVA_03312: BACOVA_03312 - citrate (Si)-synthase, at 420,624 to 421,967 _03312 BACOVA_03313: BACOVA_03313 - 3-oxo-5-alpha-steroid 4-dehydrogenase, at 422,161 to 422,922 _03313 BACOVA_03314: BACOVA_03314 - oxidoreductase, FAD/FMN-binding protein, at 422,974 to 424,197 _03314 Position (kb) 422 423Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 421.168 kb on - strand, within BACOVA_03312at 421.173 kb on + strand, within BACOVA_03312at 421.173 kb on + strand, within BACOVA_03312at 421.173 kb on + strand, within BACOVA_03312at 421.174 kb on - strand, within BACOVA_03312at 421.175 kb on + strand, within BACOVA_03312at 421.175 kb on + strand, within BACOVA_03312at 421.178 kb on + strand, within BACOVA_03312at 421.178 kb on + strand, within BACOVA_03312at 421.178 kb on + strand, within BACOVA_03312at 421.242 kb on - strand, within BACOVA_03312at 421.262 kb on + strand, within BACOVA_03312at 421.262 kb on + strand, within BACOVA_03312at 421.309 kb on + strand, within BACOVA_03312at 421.310 kb on - strand, within BACOVA_03312at 421.310 kb on - strand, within BACOVA_03312at 421.343 kb on + strand, within BACOVA_03312at 421.392 kb on - strand, within BACOVA_03312at 421.395 kb on + strand, within BACOVA_03312at 421.396 kb on - strand, within BACOVA_03312at 421.513 kb on + strand, within BACOVA_03312at 421.513 kb on + strand, within BACOVA_03312at 421.513 kb on + strand, within BACOVA_03312at 421.514 kb on - strand, within BACOVA_03312at 421.522 kb on + strand, within BACOVA_03312at 421.523 kb on - strand, within BACOVA_03312at 421.530 kb on + strand, within BACOVA_03312at 421.531 kb on - strand, within BACOVA_03312at 421.531 kb on - strand, within BACOVA_03312at 421.533 kb on + strand, within BACOVA_03312at 421.533 kb on + strand, within BACOVA_03312at 421.534 kb on - strand, within BACOVA_03312at 421.561 kb on - strand, within BACOVA_03312at 421.562 kb on + strand, within BACOVA_03312at 421.563 kb on - strand, within BACOVA_03312at 421.581 kb on + strand, within BACOVA_03312at 421.582 kb on - strand, within BACOVA_03312at 421.582 kb on - strand, within BACOVA_03312at 421.602 kb on + strand, within BACOVA_03312at 421.604 kb on + strand, within BACOVA_03312at 421.721 kb on + strand, within BACOVA_03312at 421.777 kb on - strand, within BACOVA_03312at 421.847 kb on + strandat 421.927 kb on + strandat 421.928 kb on - strandat 421.946 kb on + strandat 421.946 kb on + strandat 421.991 kb on + strandat 421.991 kb on + strandat 421.992 kb on - strandat 421.992 kb on - strandat 421.995 kb on + strandat 421.995 kb on + strandat 421.996 kb on - strandat 421.996 kb on - strandat 421.996 kb on - strandat 421.999 kb on + strandat 422.000 kb on - strandat 422.108 kb on + strandat 422.152 kb on + strandat 422.161 kb on - strandat 422.168 kb on + strandat 422.169 kb on - strandat 422.169 kb on - strandat 422.173 kb on - strandat 422.178 kb on + strandat 422.179 kb on - strandat 422.282 kb on + strand, within BACOVA_03313at 422.282 kb on + strand, within BACOVA_03313at 422.282 kb on + strand, within BACOVA_03313at 422.286 kb on + strand, within BACOVA_03313at 422.295 kb on + strand, within BACOVA_03313at 422.295 kb on + strand, within BACOVA_03313at 422.444 kb on + strand, within BACOVA_03313at 422.463 kb on + strand, within BACOVA_03313at 422.464 kb on - strand, within BACOVA_03313at 422.520 kb on + strand, within BACOVA_03313at 422.543 kb on - strand, within BACOVA_03313at 422.563 kb on + strand, within BACOVA_03313at 422.563 kb on + strand, within BACOVA_03313at 422.563 kb on + strand, within BACOVA_03313at 422.564 kb on - strand, within BACOVA_03313at 422.596 kb on - strand, within BACOVA_03313at 422.596 kb on - strand, within BACOVA_03313at 422.596 kb on - strand, within BACOVA_03313at 422.599 kb on - strand, within BACOVA_03313at 422.626 kb on - strand, within BACOVA_03313at 422.626 kb on - strand, within BACOVA_03313at 422.652 kb on + strand, within BACOVA_03313at 422.653 kb on - strand, within BACOVA_03313at 422.653 kb on - strand, within BACOVA_03313at 422.692 kb on + strand, within BACOVA_03313at 422.714 kb on - strand, within BACOVA_03313at 422.714 kb on - strand, within BACOVA_03313at 422.714 kb on - strand, within BACOVA_03313at 422.720 kb on - strand, within BACOVA_03313at 422.720 kb on - strand, within BACOVA_03313at 422.737 kb on + strand, within BACOVA_03313at 422.738 kb on - strand, within BACOVA_03313at 422.751 kb on - strand, within BACOVA_03313at 422.943 kb on + strandat 422.944 kb on - strandat 422.970 kb on + strandat 422.974 kb on - strandat 423.129 kb on + strand, within BACOVA_03314at 423.145 kb on + strand, within BACOVA_03314at 423.145 kb on + strand, within BACOVA_03314at 423.146 kb on - strand, within BACOVA_03314at 423.261 kb on - strand, within BACOVA_03314at 423.265 kb on - strand, within BACOVA_03314at 423.267 kb on - strand, within BACOVA_03314at 423.267 kb on - strand, within BACOVA_03314at 423.288 kb on + strand, within BACOVA_03314at 423.289 kb on - strand, within BACOVA_03314at 423.289 kb on - strand, within BACOVA_03314at 423.303 kb on + strand, within BACOVA_03314at 423.305 kb on + strand, within BACOVA_03314at 423.321 kb on + strand, within BACOVA_03314at 423.321 kb on + strand, within BACOVA_03314at 423.321 kb on + strand, within BACOVA_03314at 423.322 kb on - strand, within BACOVA_03314at 423.322 kb on - strand, within BACOVA_03314at 423.349 kb on + strand, within BACOVA_03314at 423.462 kb on - strand, within BACOVA_03314at 423.479 kb on - strand, within BACOVA_03314at 423.479 kb on - strand, within BACOVA_03314at 423.506 kb on - strand, within BACOVA_03314at 423.529 kb on + strand, within BACOVA_03314at 423.561 kb on + strand, within BACOVA_03314at 423.568 kb on - strand, within BACOVA_03314at 423.631 kb on - strand, within BACOVA_03314at 423.754 kb on + strand, within BACOVA_03314at 423.755 kb on - strand, within BACOVA_03314at 423.793 kb on + strand, within BACOVA_03314at 423.793 kb on + strand, within BACOVA_03314at 423.796 kb on + strand, within BACOVA_03314at 423.797 kb on - strand, within BACOVA_03314at 423.798 kb on + strand, within BACOVA_03314at 423.798 kb on + strand, within BACOVA_03314at 423.851 kb on + strand, within BACOVA_03314

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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421,168 - BACOVA_03312 0.40 +0.2
421,173 + BACOVA_03312 0.41 +0.5
421,173 + BACOVA_03312 0.41 -0.7
421,173 + BACOVA_03312 0.41 +0.0
421,174 - BACOVA_03312 0.41 +0.2
421,175 + BACOVA_03312 0.41 +0.4
421,175 + BACOVA_03312 0.41 -0.9
421,178 + BACOVA_03312 0.41 +1.2
421,178 + BACOVA_03312 0.41 -1.0
421,178 + BACOVA_03312 0.41 -1.9
421,242 - BACOVA_03312 0.46 +1.2
421,262 + BACOVA_03312 0.47 -0.1
421,262 + BACOVA_03312 0.47 +0.6
421,309 + BACOVA_03312 0.51 +0.2
421,310 - BACOVA_03312 0.51 -0.0
421,310 - BACOVA_03312 0.51 -1.1
421,343 + BACOVA_03312 0.53 +0.9
421,392 - BACOVA_03312 0.57 +0.7
421,395 + BACOVA_03312 0.57 -1.1
421,396 - BACOVA_03312 0.57 +1.1
421,513 + BACOVA_03312 0.66 +2.1
421,513 + BACOVA_03312 0.66 +0.7
421,513 + BACOVA_03312 0.66 +0.7
421,514 - BACOVA_03312 0.66 -1.4
421,522 + BACOVA_03312 0.67 +0.6
421,523 - BACOVA_03312 0.67 +1.2
421,530 + BACOVA_03312 0.67 +1.0
421,531 - BACOVA_03312 0.67 -0.0
421,531 - BACOVA_03312 0.67 -0.2
421,533 + BACOVA_03312 0.68 -0.0
421,533 + BACOVA_03312 0.68 -0.0
421,534 - BACOVA_03312 0.68 -0.4
421,561 - BACOVA_03312 0.70 -0.1
421,562 + BACOVA_03312 0.70 +0.7
421,563 - BACOVA_03312 0.70 +1.9
421,581 + BACOVA_03312 0.71 -1.5
421,582 - BACOVA_03312 0.71 -0.3
421,582 - BACOVA_03312 0.71 -1.3
421,602 + BACOVA_03312 0.73 -1.3
421,604 + BACOVA_03312 0.73 +0.2
421,721 + BACOVA_03312 0.82 -3.2
421,777 - BACOVA_03312 0.86 -0.2
421,847 + -0.0
421,927 + -0.6
421,928 - +0.7
421,946 + +0.7
421,946 + +0.0
421,991 + -1.1
421,991 + +0.3
421,992 - -0.7
421,992 - +2.1
421,995 + +0.2
421,995 + -0.1
421,996 - +0.5
421,996 - +0.8
421,996 - +0.6
421,999 + -0.3
422,000 - +0.4
422,108 + -0.1
422,152 + -0.0
422,161 - -0.7
422,168 + +0.0
422,169 - -0.6
422,169 - -0.6
422,173 - +0.9
422,178 + -0.7
422,179 - +0.6
422,282 + BACOVA_03313 0.16 +1.3
422,282 + BACOVA_03313 0.16 +0.5
422,282 + BACOVA_03313 0.16 -1.4
422,286 + BACOVA_03313 0.16 +1.7
422,295 + BACOVA_03313 0.18 -0.4
422,295 + BACOVA_03313 0.18 -0.3
422,444 + BACOVA_03313 0.37 +0.3
422,463 + BACOVA_03313 0.40 +1.7
422,464 - BACOVA_03313 0.40 +0.0
422,520 + BACOVA_03313 0.47 +1.4
422,543 - BACOVA_03313 0.50 -0.1
422,563 + BACOVA_03313 0.53 +0.6
422,563 + BACOVA_03313 0.53 -1.5
422,563 + BACOVA_03313 0.53 +0.5
422,564 - BACOVA_03313 0.53 +0.5
422,596 - BACOVA_03313 0.57 +0.0
422,596 - BACOVA_03313 0.57 -1.0
422,596 - BACOVA_03313 0.57 +1.7
422,599 - BACOVA_03313 0.57 +0.8
422,626 - BACOVA_03313 0.61 -0.3
422,626 - BACOVA_03313 0.61 -0.4
422,652 + BACOVA_03313 0.64 -0.9
422,653 - BACOVA_03313 0.65 -1.4
422,653 - BACOVA_03313 0.65 +0.9
422,692 + BACOVA_03313 0.70 +1.0
422,714 - BACOVA_03313 0.73 -0.4
422,714 - BACOVA_03313 0.73 +0.1
422,714 - BACOVA_03313 0.73 -0.1
422,720 - BACOVA_03313 0.73 +0.3
422,720 - BACOVA_03313 0.73 -1.1
422,737 + BACOVA_03313 0.76 +0.9
422,738 - BACOVA_03313 0.76 +0.1
422,751 - BACOVA_03313 0.77 +1.8
422,943 + +0.5
422,944 - -1.3
422,970 + +0.1
422,974 - +0.9
423,129 + BACOVA_03314 0.13 +1.6
423,145 + BACOVA_03314 0.14 -0.1
423,145 + BACOVA_03314 0.14 +0.3
423,146 - BACOVA_03314 0.14 +0.4
423,261 - BACOVA_03314 0.23 +0.7
423,265 - BACOVA_03314 0.24 -1.1
423,267 - BACOVA_03314 0.24 -0.9
423,267 - BACOVA_03314 0.24 -0.5
423,288 + BACOVA_03314 0.26 +1.4
423,289 - BACOVA_03314 0.26 +0.1
423,289 - BACOVA_03314 0.26 +0.5
423,303 + BACOVA_03314 0.27 -0.2
423,305 + BACOVA_03314 0.27 -0.3
423,321 + BACOVA_03314 0.28 +1.0
423,321 + BACOVA_03314 0.28 +0.6
423,321 + BACOVA_03314 0.28 +0.4
423,322 - BACOVA_03314 0.28 -0.5
423,322 - BACOVA_03314 0.28 +0.3
423,349 + BACOVA_03314 0.31 +0.4
423,462 - BACOVA_03314 0.40 -0.9
423,479 - BACOVA_03314 0.41 +1.4
423,479 - BACOVA_03314 0.41 +0.1
423,506 - BACOVA_03314 0.43 +1.4
423,529 + BACOVA_03314 0.45 +0.4
423,561 + BACOVA_03314 0.48 +0.4
423,568 - BACOVA_03314 0.49 -0.4
423,631 - BACOVA_03314 0.54 +0.4
423,754 + BACOVA_03314 0.64 +0.1
423,755 - BACOVA_03314 0.64 +0.2
423,793 + BACOVA_03314 0.67 +1.5
423,793 + BACOVA_03314 0.67 -1.2
423,796 + BACOVA_03314 0.67 -0.3
423,797 - BACOVA_03314 0.67 -1.4
423,798 + BACOVA_03314 0.67 +1.3
423,798 + BACOVA_03314 0.67 -0.2
423,851 + BACOVA_03314 0.72 +0.2

Or see this region's nucleotide sequence