Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03179 and BACOVA_03180 are separated by 1 nucleotides BACOVA_03180 and BACOVA_03181 are separated by 77 nucleotides BACOVA_03181 and BACOVA_03182 are separated by 140 nucleotides BACOVA_03182 and BACOVA_03183 are separated by 160 nucleotides
BACOVA_03179: BACOVA_03179 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 268,436 to 269,992
_03179
BACOVA_03180: BACOVA_03180 - transcriptional regulatory protein RprY, at 269,994 to 270,695
_03180
BACOVA_03181: BACOVA_03181 - hypothetical protein, at 270,773 to 270,949
_03181
BACOVA_03182: BACOVA_03182 - transcriptional regulator, MarR family, at 271,090 to 271,536
_03182
BACOVA_03183: BACOVA_03183 - ribosomal protein S6, at 271,697 to 272,041
_03183
Position (kb) 270
271 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 269.970 kb on + strand at 269.970 kb on + strand at 270.796 kb on + strand, within BACOVA_03181 at 270.864 kb on - strand, within BACOVA_03181 at 270.971 kb on - strand at 270.971 kb on - strand at 270.973 kb on - strand at 270.976 kb on - strand at 270.999 kb on - strand at 271.040 kb on - strand at 271.040 kb on - strand at 271.041 kb on + strand at 271.041 kb on + strand at 271.087 kb on + strand at 271.088 kb on - strand at 271.088 kb on - strand at 271.088 kb on - strand at 271.092 kb on - strand at 271.106 kb on + strand at 271.106 kb on + strand at 271.106 kb on + strand at 271.107 kb on - strand at 271.123 kb on + strand at 271.306 kb on - strand, within BACOVA_03182 at 271.306 kb on - strand, within BACOVA_03182 at 271.309 kb on + strand, within BACOVA_03182 at 271.399 kb on + strand, within BACOVA_03182 at 271.489 kb on + strand, within BACOVA_03182 at 271.490 kb on - strand, within BACOVA_03182 at 271.502 kb on - strand at 271.504 kb on - strand at 271.567 kb on + strand at 271.591 kb on - strand at 271.623 kb on + strand at 271.633 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 269,970 + -2.1 269,970 + -0.2 270,796 + BACOVA_03181 0.13 +0.0 270,864 - BACOVA_03181 0.51 +0.0 270,971 - -3.2 270,971 - -5.1 270,973 - -2.8 270,976 - -3.8 270,999 - -2.8 271,040 - -0.4 271,040 - +0.0 271,041 + -1.5 271,041 + -1.6 271,087 + -1.6 271,088 - -1.6 271,088 - -0.5 271,088 - +1.5 271,092 - +0.2 271,106 + -1.1 271,106 + -0.4 271,106 + -2.5 271,107 - -1.1 271,123 + -1.7 271,306 - BACOVA_03182 0.48 -2.8 271,306 - BACOVA_03182 0.48 -0.8 271,309 + BACOVA_03182 0.49 -1.9 271,399 + BACOVA_03182 0.69 -0.6 271,489 + BACOVA_03182 0.89 -2.4 271,490 - BACOVA_03182 0.89 -2.5 271,502 - -3.6 271,504 - -0.9 271,567 + -0.2 271,591 - +1.4 271,623 + +2.5 271,633 + +0.3
Or see this region's nucleotide sequence