Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02963

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02963 and BACOVA_02962 overlap by 57 nucleotidesBACOVA_02962 and BACOVA_02964 are separated by 295 nucleotides BACOVA_02963: BACOVA_02963 - hypothetical protein, at 44,382 to 44,540 _02963 BACOVA_02962: BACOVA_02962 - hypothetical protein, at 44,484 to 44,831 _02962 BACOVA_02964: BACOVA_02964 - hypothetical protein, at 45,127 to 45,426 _02964 Position (kb) 44 45Strain fitness (log2 ratio) -2 -1 0 1 2at 43.391 kb on + strandat 43.394 kb on - strandat 43.426 kb on - strandat 43.429 kb on + strandat 43.429 kb on + strandat 43.429 kb on + strandat 43.430 kb on - strandat 43.430 kb on - strandat 43.430 kb on - strandat 43.470 kb on + strandat 43.536 kb on - strandat 43.538 kb on - strandat 43.541 kb on + strandat 43.542 kb on - strandat 43.545 kb on + strandat 43.550 kb on + strandat 43.551 kb on - strandat 43.551 kb on - strandat 43.557 kb on + strandat 43.565 kb on - strandat 43.584 kb on + strandat 43.595 kb on - strandat 43.599 kb on - strandat 43.602 kb on + strandat 43.605 kb on + strandat 43.605 kb on + strandat 43.622 kb on - strandat 43.639 kb on + strandat 43.642 kb on + strandat 43.667 kb on - strandat 43.709 kb on + strandat 43.710 kb on - strandat 43.710 kb on - strandat 43.710 kb on - strandat 43.713 kb on + strandat 43.713 kb on + strandat 43.713 kb on + strandat 43.716 kb on + strandat 43.744 kb on - strandat 43.791 kb on - strandat 43.832 kb on - strandat 43.858 kb on + strandat 43.859 kb on - strandat 43.859 kb on - strandat 43.861 kb on + strandat 43.889 kb on - strandat 43.897 kb on + strandat 43.918 kb on + strandat 43.919 kb on - strandat 43.922 kb on + strandat 43.923 kb on - strandat 43.923 kb on - strandat 43.923 kb on - strandat 43.923 kb on - strandat 43.936 kb on - strandat 43.936 kb on - strandat 43.947 kb on - strandat 44.036 kb on - strandat 44.046 kb on + strandat 44.046 kb on + strandat 44.099 kb on - strandat 44.100 kb on + strandat 44.100 kb on + strandat 44.100 kb on + strandat 44.101 kb on - strandat 44.102 kb on + strandat 44.102 kb on + strandat 44.158 kb on + strandat 44.159 kb on - strandat 44.252 kb on + strandat 44.252 kb on + strandat 44.252 kb on + strandat 44.256 kb on + strandat 44.321 kb on + strandat 44.322 kb on + strandat 44.322 kb on - strandat 44.332 kb on + strandat 44.332 kb on + strandat 44.334 kb on + strandat 44.334 kb on + strandat 44.334 kb on + strandat 44.335 kb on - strandat 44.383 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.394 kb on + strandat 44.395 kb on - strandat 44.395 kb on - strandat 44.395 kb on - strandat 44.396 kb on + strandat 44.396 kb on + strandat 44.396 kb on + strandat 44.397 kb on - strandat 44.397 kb on - strandat 44.397 kb on - strandat 44.397 kb on - strandat 44.397 kb on - strandat 44.397 kb on - strandat 44.398 kb on + strand, within BACOVA_02963at 44.398 kb on + strand, within BACOVA_02963at 44.399 kb on - strand, within BACOVA_02963at 44.410 kb on - strand, within BACOVA_02963at 44.410 kb on - strand, within BACOVA_02963at 44.483 kb on + strand, within BACOVA_02963at 44.484 kb on - strandat 44.487 kb on + strandat 44.487 kb on + strandat 44.488 kb on - strandat 44.558 kb on - strand, within BACOVA_02962at 44.565 kb on - strand, within BACOVA_02962at 44.629 kb on - strand, within BACOVA_02962at 44.630 kb on + strand, within BACOVA_02962at 44.635 kb on + strand, within BACOVA_02962at 44.644 kb on - strand, within BACOVA_02962at 44.670 kb on + strand, within BACOVA_02962at 44.670 kb on + strand, within BACOVA_02962at 44.670 kb on + strand, within BACOVA_02962at 44.671 kb on - strand, within BACOVA_02962at 44.671 kb on - strand, within BACOVA_02962at 44.703 kb on - strand, within BACOVA_02962at 44.728 kb on - strand, within BACOVA_02962at 44.728 kb on - strand, within BACOVA_02962at 44.776 kb on + strand, within BACOVA_02962at 44.832 kb on + strandat 44.878 kb on + strandat 44.888 kb on - strandat 44.888 kb on - strandat 44.888 kb on - strandat 44.888 kb on - strandat 44.900 kb on + strandat 44.917 kb on - strandat 44.917 kb on - strandat 44.920 kb on + strandat 44.920 kb on + strandat 44.921 kb on - strandat 44.921 kb on - strandat 44.921 kb on - strandat 44.921 kb on - strandat 44.929 kb on + strandat 44.970 kb on + strandat 44.999 kb on + strandat 45.000 kb on - strandat 45.016 kb on + strandat 45.017 kb on - strandat 45.085 kb on + strandat 45.085 kb on + strandat 45.085 kb on + strandat 45.088 kb on + strandat 45.088 kb on + strandat 45.089 kb on - strandat 45.089 kb on - strandat 45.104 kb on + strandat 45.160 kb on - strand, within BACOVA_02964at 45.211 kb on + strand, within BACOVA_02964at 45.212 kb on - strand, within BACOVA_02964at 45.216 kb on + strand, within BACOVA_02964at 45.216 kb on + strand, within BACOVA_02964at 45.463 kb on - strandat 45.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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43,391 + +0.1
43,394 - -1.1
43,426 - -0.3
43,429 + +0.8
43,429 + -0.4
43,429 + -0.8
43,430 - -1.1
43,430 - -0.1
43,430 - +0.3
43,470 + +2.4
43,536 - +1.3
43,538 - -0.4
43,541 + +0.5
43,542 - -0.4
43,545 + +1.4
43,550 + +0.7
43,551 - -0.2
43,551 - +0.7
43,557 + +1.5
43,565 - -2.6
43,584 + -1.3
43,595 - +0.2
43,599 - +2.1
43,602 + +0.4
43,605 + +0.7
43,605 + +1.4
43,622 - +1.0
43,639 + +1.3
43,642 + +0.8
43,667 - +0.4
43,709 + +1.0
43,710 - +0.8
43,710 - -1.4
43,710 - +0.4
43,713 + -0.8
43,713 + -0.1
43,713 + +0.4
43,716 + +2.7
43,744 - +0.3
43,791 - +0.8
43,832 - -2.1
43,858 + +0.7
43,859 - +0.4
43,859 - +0.2
43,861 + +1.2
43,889 - +0.4
43,897 + +0.3
43,918 + +0.4
43,919 - +0.6
43,922 + +0.2
43,923 - -1.2
43,923 - +0.0
43,923 - +0.2
43,923 - +0.0
43,936 - +0.0
43,936 - +2.0
43,947 - -0.3
44,036 - -0.5
44,046 + +0.6
44,046 + -1.3
44,099 - +1.7
44,100 + -0.2
44,100 + -0.1
44,100 + +1.8
44,101 - +0.0
44,102 + -1.4
44,102 + -0.2
44,158 + +0.0
44,159 - -0.7
44,252 + +0.9
44,252 + +0.8
44,252 + -0.6
44,256 + +0.2
44,321 + +0.0
44,322 + +0.6
44,322 - +0.1
44,332 + +0.1
44,332 + -0.7
44,334 + -0.5
44,334 + +1.0
44,334 + -0.6
44,335 - -1.0
44,383 + -1.6
44,394 + -0.2
44,394 + +0.8
44,394 + -0.1
44,394 + +0.7
44,394 + +0.4
44,394 + -0.6
44,394 + +1.1
44,395 - +0.9
44,395 - +0.4
44,395 - +0.1
44,396 + +0.4
44,396 + +1.4
44,396 + +0.2
44,397 - -0.7
44,397 - +0.0
44,397 - -0.0
44,397 - +1.2
44,397 - -1.9
44,397 - -1.1
44,398 + BACOVA_02963 0.10 -2.1
44,398 + BACOVA_02963 0.10 +0.1
44,399 - BACOVA_02963 0.11 -0.8
44,410 - BACOVA_02963 0.18 -1.5
44,410 - BACOVA_02963 0.18 +1.0
44,483 + BACOVA_02963 0.64 -0.5
44,484 - +0.4
44,487 + -0.6
44,487 + -0.9
44,488 - +1.5
44,558 - BACOVA_02962 0.21 +0.1
44,565 - BACOVA_02962 0.23 +0.3
44,629 - BACOVA_02962 0.42 -1.1
44,630 + BACOVA_02962 0.42 +1.0
44,635 + BACOVA_02962 0.43 +0.3
44,644 - BACOVA_02962 0.46 -0.4
44,670 + BACOVA_02962 0.53 +1.3
44,670 + BACOVA_02962 0.53 -1.4
44,670 + BACOVA_02962 0.53 +0.4
44,671 - BACOVA_02962 0.54 -0.2
44,671 - BACOVA_02962 0.54 +1.7
44,703 - BACOVA_02962 0.63 -0.6
44,728 - BACOVA_02962 0.70 +0.3
44,728 - BACOVA_02962 0.70 +0.2
44,776 + BACOVA_02962 0.84 -2.2
44,832 + -0.5
44,878 + +0.2
44,888 - +0.8
44,888 - -1.1
44,888 - +0.0
44,888 - -1.0
44,900 + -1.4
44,917 - -0.2
44,917 - +0.5
44,920 + -0.5
44,920 + -0.6
44,921 - -2.4
44,921 - -0.4
44,921 - -0.1
44,921 - +0.0
44,929 + +0.3
44,970 + -0.6
44,999 + -1.1
45,000 - -0.2
45,016 + +0.1
45,017 - -0.2
45,085 + +0.8
45,085 + -0.4
45,085 + -2.3
45,088 + +1.6
45,088 + -0.4
45,089 - -0.6
45,089 - -0.1
45,104 + +0.1
45,160 - BACOVA_02964 0.11 +1.2
45,211 + BACOVA_02964 0.28 +0.7
45,212 - BACOVA_02964 0.28 +2.1
45,216 + BACOVA_02964 0.30 -0.3
45,216 + BACOVA_02964 0.30 +0.1
45,463 - -0.1
45,505 - +0.0

Or see this region's nucleotide sequence