Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02963 and BACOVA_02962 overlap by 57 nucleotides BACOVA_02962 and BACOVA_02964 are separated by 295 nucleotides
BACOVA_02963: BACOVA_02963 - hypothetical protein, at 44,382 to 44,540
_02963
BACOVA_02962: BACOVA_02962 - hypothetical protein, at 44,484 to 44,831
_02962
BACOVA_02964: BACOVA_02964 - hypothetical protein, at 45,127 to 45,426
_02964
Position (kb)
44
45 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 43.391 kb on + strand at 43.394 kb on - strand at 43.426 kb on - strand at 43.429 kb on + strand at 43.429 kb on + strand at 43.429 kb on + strand at 43.430 kb on - strand at 43.430 kb on - strand at 43.430 kb on - strand at 43.470 kb on + strand at 43.536 kb on - strand at 43.538 kb on - strand at 43.541 kb on + strand at 43.542 kb on - strand at 43.545 kb on + strand at 43.550 kb on + strand at 43.551 kb on - strand at 43.551 kb on - strand at 43.557 kb on + strand at 43.565 kb on - strand at 43.584 kb on + strand at 43.595 kb on - strand at 43.599 kb on - strand at 43.602 kb on + strand at 43.605 kb on + strand at 43.605 kb on + strand at 43.622 kb on - strand at 43.639 kb on + strand at 43.642 kb on + strand at 43.667 kb on - strand at 43.709 kb on + strand at 43.710 kb on - strand at 43.710 kb on - strand at 43.710 kb on - strand at 43.713 kb on + strand at 43.713 kb on + strand at 43.713 kb on + strand at 43.716 kb on + strand at 43.744 kb on - strand at 43.791 kb on - strand at 43.832 kb on - strand at 43.858 kb on + strand at 43.859 kb on - strand at 43.859 kb on - strand at 43.861 kb on + strand at 43.889 kb on - strand at 43.897 kb on + strand at 43.918 kb on + strand at 43.919 kb on - strand at 43.922 kb on + strand at 43.923 kb on - strand at 43.923 kb on - strand at 43.923 kb on - strand at 43.923 kb on - strand at 43.936 kb on - strand at 43.936 kb on - strand at 43.947 kb on - strand at 44.036 kb on - strand at 44.046 kb on + strand at 44.046 kb on + strand at 44.099 kb on - strand at 44.100 kb on + strand at 44.100 kb on + strand at 44.100 kb on + strand at 44.101 kb on - strand at 44.102 kb on + strand at 44.102 kb on + strand at 44.158 kb on + strand at 44.159 kb on - strand at 44.252 kb on + strand at 44.252 kb on + strand at 44.252 kb on + strand at 44.256 kb on + strand at 44.321 kb on + strand at 44.322 kb on + strand at 44.322 kb on - strand at 44.332 kb on + strand at 44.332 kb on + strand at 44.334 kb on + strand at 44.334 kb on + strand at 44.334 kb on + strand at 44.335 kb on - strand at 44.383 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.394 kb on + strand at 44.395 kb on - strand at 44.395 kb on - strand at 44.395 kb on - strand at 44.396 kb on + strand at 44.396 kb on + strand at 44.396 kb on + strand at 44.397 kb on - strand at 44.397 kb on - strand at 44.397 kb on - strand at 44.397 kb on - strand at 44.397 kb on - strand at 44.397 kb on - strand at 44.398 kb on + strand, within BACOVA_02963 at 44.398 kb on + strand, within BACOVA_02963 at 44.399 kb on - strand, within BACOVA_02963 at 44.410 kb on - strand, within BACOVA_02963 at 44.410 kb on - strand, within BACOVA_02963 at 44.483 kb on + strand, within BACOVA_02963 at 44.484 kb on - strand at 44.487 kb on + strand at 44.487 kb on + strand at 44.488 kb on - strand at 44.558 kb on - strand, within BACOVA_02962 at 44.565 kb on - strand, within BACOVA_02962 at 44.629 kb on - strand, within BACOVA_02962 at 44.630 kb on + strand, within BACOVA_02962 at 44.635 kb on + strand, within BACOVA_02962 at 44.644 kb on - strand, within BACOVA_02962 at 44.670 kb on + strand, within BACOVA_02962 at 44.670 kb on + strand, within BACOVA_02962 at 44.670 kb on + strand, within BACOVA_02962 at 44.671 kb on - strand, within BACOVA_02962 at 44.671 kb on - strand, within BACOVA_02962 at 44.703 kb on - strand, within BACOVA_02962 at 44.728 kb on - strand, within BACOVA_02962 at 44.728 kb on - strand, within BACOVA_02962 at 44.776 kb on + strand, within BACOVA_02962 at 44.832 kb on + strand at 44.878 kb on + strand at 44.888 kb on - strand at 44.888 kb on - strand at 44.888 kb on - strand at 44.888 kb on - strand at 44.900 kb on + strand at 44.917 kb on - strand at 44.917 kb on - strand at 44.920 kb on + strand at 44.920 kb on + strand at 44.921 kb on - strand at 44.921 kb on - strand at 44.921 kb on - strand at 44.921 kb on - strand at 44.929 kb on + strand at 44.970 kb on + strand at 44.999 kb on + strand at 45.000 kb on - strand at 45.016 kb on + strand at 45.017 kb on - strand at 45.085 kb on + strand at 45.085 kb on + strand at 45.085 kb on + strand at 45.088 kb on + strand at 45.088 kb on + strand at 45.089 kb on - strand at 45.089 kb on - strand at 45.104 kb on + strand at 45.160 kb on - strand, within BACOVA_02964 at 45.211 kb on + strand, within BACOVA_02964 at 45.212 kb on - strand, within BACOVA_02964 at 45.216 kb on + strand, within BACOVA_02964 at 45.216 kb on + strand, within BACOVA_02964 at 45.463 kb on - strand at 45.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 43,391 + +0.1 43,394 - -1.1 43,426 - -0.3 43,429 + +0.8 43,429 + -0.4 43,429 + -0.8 43,430 - -1.1 43,430 - -0.1 43,430 - +0.3 43,470 + +2.4 43,536 - +1.3 43,538 - -0.4 43,541 + +0.5 43,542 - -0.4 43,545 + +1.4 43,550 + +0.7 43,551 - -0.2 43,551 - +0.7 43,557 + +1.5 43,565 - -2.6 43,584 + -1.3 43,595 - +0.2 43,599 - +2.1 43,602 + +0.4 43,605 + +0.7 43,605 + +1.4 43,622 - +1.0 43,639 + +1.3 43,642 + +0.8 43,667 - +0.4 43,709 + +1.0 43,710 - +0.8 43,710 - -1.4 43,710 - +0.4 43,713 + -0.8 43,713 + -0.1 43,713 + +0.4 43,716 + +2.7 43,744 - +0.3 43,791 - +0.8 43,832 - -2.1 43,858 + +0.7 43,859 - +0.4 43,859 - +0.2 43,861 + +1.2 43,889 - +0.4 43,897 + +0.3 43,918 + +0.4 43,919 - +0.6 43,922 + +0.2 43,923 - -1.2 43,923 - +0.0 43,923 - +0.2 43,923 - +0.0 43,936 - +0.0 43,936 - +2.0 43,947 - -0.3 44,036 - -0.5 44,046 + +0.6 44,046 + -1.3 44,099 - +1.7 44,100 + -0.2 44,100 + -0.1 44,100 + +1.8 44,101 - +0.0 44,102 + -1.4 44,102 + -0.2 44,158 + +0.0 44,159 - -0.7 44,252 + +0.9 44,252 + +0.8 44,252 + -0.6 44,256 + +0.2 44,321 + +0.0 44,322 + +0.6 44,322 - +0.1 44,332 + +0.1 44,332 + -0.7 44,334 + -0.5 44,334 + +1.0 44,334 + -0.6 44,335 - -1.0 44,383 + -1.6 44,394 + -0.2 44,394 + +0.8 44,394 + -0.1 44,394 + +0.7 44,394 + +0.4 44,394 + -0.6 44,394 + +1.1 44,395 - +0.9 44,395 - +0.4 44,395 - +0.1 44,396 + +0.4 44,396 + +1.4 44,396 + +0.2 44,397 - -0.7 44,397 - +0.0 44,397 - -0.0 44,397 - +1.2 44,397 - -1.9 44,397 - -1.1 44,398 + BACOVA_02963 0.10 -2.1 44,398 + BACOVA_02963 0.10 +0.1 44,399 - BACOVA_02963 0.11 -0.8 44,410 - BACOVA_02963 0.18 -1.5 44,410 - BACOVA_02963 0.18 +1.0 44,483 + BACOVA_02963 0.64 -0.5 44,484 - +0.4 44,487 + -0.6 44,487 + -0.9 44,488 - +1.5 44,558 - BACOVA_02962 0.21 +0.1 44,565 - BACOVA_02962 0.23 +0.3 44,629 - BACOVA_02962 0.42 -1.1 44,630 + BACOVA_02962 0.42 +1.0 44,635 + BACOVA_02962 0.43 +0.3 44,644 - BACOVA_02962 0.46 -0.4 44,670 + BACOVA_02962 0.53 +1.3 44,670 + BACOVA_02962 0.53 -1.4 44,670 + BACOVA_02962 0.53 +0.4 44,671 - BACOVA_02962 0.54 -0.2 44,671 - BACOVA_02962 0.54 +1.7 44,703 - BACOVA_02962 0.63 -0.6 44,728 - BACOVA_02962 0.70 +0.3 44,728 - BACOVA_02962 0.70 +0.2 44,776 + BACOVA_02962 0.84 -2.2 44,832 + -0.5 44,878 + +0.2 44,888 - +0.8 44,888 - -1.1 44,888 - +0.0 44,888 - -1.0 44,900 + -1.4 44,917 - -0.2 44,917 - +0.5 44,920 + -0.5 44,920 + -0.6 44,921 - -2.4 44,921 - -0.4 44,921 - -0.1 44,921 - +0.0 44,929 + +0.3 44,970 + -0.6 44,999 + -1.1 45,000 - -0.2 45,016 + +0.1 45,017 - -0.2 45,085 + +0.8 45,085 + -0.4 45,085 + -2.3 45,088 + +1.6 45,088 + -0.4 45,089 - -0.6 45,089 - -0.1 45,104 + +0.1 45,160 - BACOVA_02964 0.11 +1.2 45,211 + BACOVA_02964 0.28 +0.7 45,212 - BACOVA_02964 0.28 +2.1 45,216 + BACOVA_02964 0.30 -0.3 45,216 + BACOVA_02964 0.30 +0.1 45,463 - -0.1 45,505 - +0.0
Or see this region's nucleotide sequence