Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02899

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02898 and BACOVA_02899 are separated by 122 nucleotidesBACOVA_02899 and BACOVA_02900 are separated by 90 nucleotidesBACOVA_02900 and BACOVA_02901 are separated by 138 nucleotidesBACOVA_02901 and BACOVA_02902 are separated by 117 nucleotides BACOVA_02898: BACOVA_02898 - hypothetical protein, at 401,031 to 401,921 _02898 BACOVA_02899: BACOVA_02899 - putative DNA-binding protein, at 402,044 to 402,562 _02899 BACOVA_02900: BACOVA_02900 - N-acetylmuramoyl-L-alanine amidase, at 402,653 to 403,120 _02900 BACOVA_02901: BACOVA_02901 - hypothetical protein, at 403,259 to 403,360 _02901 BACOVA_02902: BACOVA_02902 - hypothetical protein, at 403,478 to 405,442 _02902 Position (kb) 402 403Strain fitness (log2 ratio) -2 -1 0 1 2at 401.093 kb on + strandat 401.094 kb on - strandat 401.166 kb on + strand, within BACOVA_02898at 401.167 kb on - strand, within BACOVA_02898at 401.167 kb on - strand, within BACOVA_02898at 401.181 kb on + strand, within BACOVA_02898at 401.182 kb on - strand, within BACOVA_02898at 401.182 kb on - strand, within BACOVA_02898at 401.184 kb on + strand, within BACOVA_02898at 401.184 kb on + strand, within BACOVA_02898at 401.184 kb on + strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.185 kb on - strand, within BACOVA_02898at 401.208 kb on + strand, within BACOVA_02898at 401.232 kb on + strand, within BACOVA_02898at 401.232 kb on + strand, within BACOVA_02898at 401.261 kb on + strand, within BACOVA_02898at 401.261 kb on + strand, within BACOVA_02898at 401.261 kb on + strand, within BACOVA_02898at 401.498 kb on - strand, within BACOVA_02898at 401.794 kb on - strand, within BACOVA_02898at 401.898 kb on + strandat 401.899 kb on - strandat 401.967 kb on - strandat 402.012 kb on + strandat 402.037 kb on + strandat 402.056 kb on + strandat 402.171 kb on - strand, within BACOVA_02899at 402.195 kb on + strand, within BACOVA_02899at 402.195 kb on + strand, within BACOVA_02899at 402.307 kb on + strand, within BACOVA_02899at 402.333 kb on + strand, within BACOVA_02899at 402.334 kb on - strand, within BACOVA_02899at 402.398 kb on - strand, within BACOVA_02899at 402.481 kb on + strand, within BACOVA_02899at 402.481 kb on + strand, within BACOVA_02899at 402.488 kb on - strand, within BACOVA_02899at 402.488 kb on - strand, within BACOVA_02899at 402.561 kb on - strandat 402.625 kb on - strandat 402.633 kb on - strandat 402.633 kb on - strandat 402.639 kb on - strandat 402.670 kb on - strandat 402.707 kb on - strand, within BACOVA_02900at 402.774 kb on - strand, within BACOVA_02900at 402.862 kb on - strand, within BACOVA_02900at 402.873 kb on - strand, within BACOVA_02900at 403.134 kb on + strandat 403.144 kb on + strandat 403.176 kb on - strandat 403.179 kb on + strandat 403.179 kb on + strandat 403.179 kb on + strandat 403.181 kb on + strandat 403.182 kb on - strandat 403.285 kb on + strand, within BACOVA_02901at 403.285 kb on + strand, within BACOVA_02901at 403.285 kb on + strand, within BACOVA_02901at 403.286 kb on - strand, within BACOVA_02901at 403.304 kb on - strand, within BACOVA_02901at 403.342 kb on + strand, within BACOVA_02901at 403.370 kb on - strandat 403.373 kb on + strandat 403.410 kb on - strandat 403.429 kb on + strandat 403.448 kb on + strandat 403.451 kb on + strandat 403.452 kb on - strandat 403.483 kb on + strandat 403.487 kb on + strandat 403.492 kb on + strandat 403.493 kb on - strandat 403.528 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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401,093 + +0.8
401,094 - +2.2
401,166 + BACOVA_02898 0.15 +0.4
401,167 - BACOVA_02898 0.15 +0.1
401,167 - BACOVA_02898 0.15 +0.4
401,181 + BACOVA_02898 0.17 -1.3
401,182 - BACOVA_02898 0.17 -0.5
401,182 - BACOVA_02898 0.17 +1.1
401,184 + BACOVA_02898 0.17 -0.6
401,184 + BACOVA_02898 0.17 +0.2
401,184 + BACOVA_02898 0.17 -0.1
401,185 - BACOVA_02898 0.17 +0.6
401,185 - BACOVA_02898 0.17 -0.5
401,185 - BACOVA_02898 0.17 -0.3
401,185 - BACOVA_02898 0.17 +1.7
401,185 - BACOVA_02898 0.17 -0.3
401,185 - BACOVA_02898 0.17 +0.4
401,208 + BACOVA_02898 0.20 -0.6
401,232 + BACOVA_02898 0.23 +0.8
401,232 + BACOVA_02898 0.23 -0.4
401,261 + BACOVA_02898 0.26 +0.8
401,261 + BACOVA_02898 0.26 -0.4
401,261 + BACOVA_02898 0.26 -0.9
401,498 - BACOVA_02898 0.52 +0.2
401,794 - BACOVA_02898 0.86 +0.9
401,898 + -1.0
401,899 - -0.0
401,967 - +0.6
402,012 + +0.5
402,037 + +1.9
402,056 + +0.9
402,171 - BACOVA_02899 0.24 +1.9
402,195 + BACOVA_02899 0.29 +0.4
402,195 + BACOVA_02899 0.29 -1.0
402,307 + BACOVA_02899 0.51 -0.7
402,333 + BACOVA_02899 0.56 +0.8
402,334 - BACOVA_02899 0.56 -0.5
402,398 - BACOVA_02899 0.68 +0.6
402,481 + BACOVA_02899 0.84 -0.1
402,481 + BACOVA_02899 0.84 +1.3
402,488 - BACOVA_02899 0.86 -0.6
402,488 - BACOVA_02899 0.86 -0.5
402,561 - +0.4
402,625 - -1.7
402,633 - +0.3
402,633 - -0.8
402,639 - +0.2
402,670 - +0.1
402,707 - BACOVA_02900 0.12 +0.0
402,774 - BACOVA_02900 0.26 -0.7
402,862 - BACOVA_02900 0.45 -0.9
402,873 - BACOVA_02900 0.47 +1.7
403,134 + -0.2
403,144 + -0.5
403,176 - +0.6
403,179 + -0.1
403,179 + +0.6
403,179 + -0.1
403,181 + +0.2
403,182 - +0.4
403,285 + BACOVA_02901 0.25 -1.8
403,285 + BACOVA_02901 0.25 -0.5
403,285 + BACOVA_02901 0.25 -1.0
403,286 - BACOVA_02901 0.26 -2.4
403,304 - BACOVA_02901 0.44 -0.8
403,342 + BACOVA_02901 0.81 -0.8
403,370 - -0.5
403,373 + +0.4
403,410 - -1.0
403,429 + -1.0
403,448 + -0.4
403,451 + +1.3
403,452 - -0.0
403,483 + -0.7
403,487 + +1.0
403,492 + +0.6
403,493 - -0.2
403,528 + +1.1

Or see this region's nucleotide sequence