Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02650

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02649 and BACOVA_02650 are separated by 66 nucleotidesBACOVA_02650 and BACOVA_02651 are separated by 13 nucleotides BACOVA_02649: BACOVA_02649 - N-terminal ig-like domain of cellulase, at 44,499 to 46,262 _02649 BACOVA_02650: BACOVA_02650 - IPT/TIG domain protein, at 46,329 to 47,798 _02650 BACOVA_02651: BACOVA_02651 - SusD family protein, at 47,812 to 49,452 _02651 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.445 kb on + strand, within BACOVA_02649at 45.445 kb on + strand, within BACOVA_02649at 45.446 kb on - strand, within BACOVA_02649at 45.458 kb on + strand, within BACOVA_02649at 45.511 kb on + strand, within BACOVA_02649at 45.512 kb on - strand, within BACOVA_02649at 45.512 kb on - strand, within BACOVA_02649at 45.513 kb on + strand, within BACOVA_02649at 45.514 kb on - strand, within BACOVA_02649at 45.514 kb on - strand, within BACOVA_02649at 45.544 kb on - strand, within BACOVA_02649at 45.611 kb on + strand, within BACOVA_02649at 45.611 kb on + strand, within BACOVA_02649at 45.615 kb on + strand, within BACOVA_02649at 45.652 kb on + strand, within BACOVA_02649at 45.656 kb on + strand, within BACOVA_02649at 45.657 kb on - strand, within BACOVA_02649at 45.657 kb on - strand, within BACOVA_02649at 45.673 kb on - strand, within BACOVA_02649at 45.694 kb on + strand, within BACOVA_02649at 45.695 kb on + strand, within BACOVA_02649at 45.697 kb on + strand, within BACOVA_02649at 45.697 kb on + strand, within BACOVA_02649at 45.698 kb on - strand, within BACOVA_02649at 45.698 kb on - strand, within BACOVA_02649at 45.698 kb on - strand, within BACOVA_02649at 45.702 kb on - strand, within BACOVA_02649at 45.704 kb on + strand, within BACOVA_02649at 45.722 kb on - strand, within BACOVA_02649at 45.722 kb on - strand, within BACOVA_02649at 45.786 kb on + strand, within BACOVA_02649at 45.786 kb on + strand, within BACOVA_02649at 45.786 kb on + strand, within BACOVA_02649at 45.792 kb on + strand, within BACOVA_02649at 45.792 kb on + strand, within BACOVA_02649at 45.793 kb on - strand, within BACOVA_02649at 45.839 kb on - strand, within BACOVA_02649at 45.910 kb on - strand, within BACOVA_02649at 45.910 kb on - strand, within BACOVA_02649at 45.912 kb on + strand, within BACOVA_02649at 45.912 kb on + strand, within BACOVA_02649at 45.912 kb on + strand, within BACOVA_02649at 45.913 kb on - strand, within BACOVA_02649at 45.924 kb on + strand, within BACOVA_02649at 45.936 kb on - strand, within BACOVA_02649at 45.960 kb on + strand, within BACOVA_02649at 45.960 kb on + strand, within BACOVA_02649at 45.960 kb on + strand, within BACOVA_02649at 45.960 kb on + strand, within BACOVA_02649at 45.961 kb on - strand, within BACOVA_02649at 46.041 kb on + strand, within BACOVA_02649at 46.086 kb on + strandat 46.089 kb on + strandat 46.125 kb on + strandat 46.246 kb on + strandat 46.247 kb on - strandat 46.247 kb on - strandat 46.314 kb on - strandat 46.371 kb on - strandat 46.374 kb on - strandat 46.386 kb on - strandat 46.405 kb on - strandat 46.410 kb on + strandat 46.411 kb on - strandat 46.411 kb on - strandat 46.412 kb on + strandat 46.412 kb on + strandat 46.413 kb on - strandat 46.427 kb on + strandat 46.427 kb on + strandat 46.444 kb on + strandat 46.444 kb on + strandat 46.444 kb on + strandat 46.445 kb on - strandat 46.448 kb on + strandat 46.470 kb on + strandat 46.477 kb on - strand, within BACOVA_02650at 46.670 kb on + strand, within BACOVA_02650at 46.670 kb on + strand, within BACOVA_02650at 46.671 kb on - strand, within BACOVA_02650at 46.712 kb on - strand, within BACOVA_02650at 46.757 kb on + strand, within BACOVA_02650at 46.765 kb on + strand, within BACOVA_02650at 46.765 kb on + strand, within BACOVA_02650at 46.765 kb on + strand, within BACOVA_02650at 46.835 kb on - strand, within BACOVA_02650at 46.842 kb on + strand, within BACOVA_02650at 46.882 kb on - strand, within BACOVA_02650at 46.942 kb on - strand, within BACOVA_02650at 46.949 kb on + strand, within BACOVA_02650at 47.010 kb on - strand, within BACOVA_02650at 47.025 kb on + strand, within BACOVA_02650at 47.025 kb on + strand, within BACOVA_02650at 47.048 kb on + strand, within BACOVA_02650at 47.048 kb on + strand, within BACOVA_02650at 47.049 kb on - strand, within BACOVA_02650at 47.049 kb on - strand, within BACOVA_02650at 47.054 kb on + strand, within BACOVA_02650at 47.067 kb on + strand, within BACOVA_02650at 47.097 kb on - strand, within BACOVA_02650at 47.147 kb on + strand, within BACOVA_02650at 47.158 kb on - strand, within BACOVA_02650at 47.205 kb on - strand, within BACOVA_02650at 47.215 kb on + strand, within BACOVA_02650at 47.215 kb on + strand, within BACOVA_02650at 47.222 kb on + strand, within BACOVA_02650at 47.223 kb on - strand, within BACOVA_02650at 47.226 kb on + strand, within BACOVA_02650at 47.227 kb on - strand, within BACOVA_02650at 47.227 kb on - strand, within BACOVA_02650at 47.227 kb on - strand, within BACOVA_02650at 47.241 kb on + strand, within BACOVA_02650at 47.241 kb on + strand, within BACOVA_02650at 47.299 kb on + strand, within BACOVA_02650at 47.318 kb on - strand, within BACOVA_02650at 47.318 kb on - strand, within BACOVA_02650at 47.361 kb on - strand, within BACOVA_02650at 47.361 kb on - strand, within BACOVA_02650at 47.365 kb on + strand, within BACOVA_02650at 47.366 kb on - strand, within BACOVA_02650at 47.389 kb on + strand, within BACOVA_02650at 47.389 kb on + strand, within BACOVA_02650at 47.390 kb on - strand, within BACOVA_02650at 47.419 kb on + strand, within BACOVA_02650at 47.420 kb on - strand, within BACOVA_02650at 47.420 kb on - strand, within BACOVA_02650at 47.499 kb on - strand, within BACOVA_02650at 47.511 kb on + strand, within BACOVA_02650at 47.512 kb on - strand, within BACOVA_02650at 47.512 kb on - strand, within BACOVA_02650at 47.512 kb on - strand, within BACOVA_02650at 47.512 kb on - strand, within BACOVA_02650at 47.517 kb on - strand, within BACOVA_02650at 47.517 kb on - strand, within BACOVA_02650at 47.523 kb on - strand, within BACOVA_02650at 47.533 kb on + strand, within BACOVA_02650at 47.534 kb on - strand, within BACOVA_02650at 47.550 kb on - strand, within BACOVA_02650at 47.567 kb on + strand, within BACOVA_02650at 47.567 kb on + strand, within BACOVA_02650at 47.568 kb on - strand, within BACOVA_02650at 47.569 kb on + strand, within BACOVA_02650at 47.570 kb on - strand, within BACOVA_02650at 47.570 kb on - strand, within BACOVA_02650at 47.629 kb on - strand, within BACOVA_02650at 47.636 kb on + strand, within BACOVA_02650at 47.645 kb on + strand, within BACOVA_02650at 47.645 kb on + strand, within BACOVA_02650at 47.667 kb on + strandat 47.673 kb on + strandat 47.674 kb on - strandat 47.676 kb on - strandat 47.676 kb on - strandat 47.677 kb on + strandat 47.678 kb on - strandat 47.686 kb on - strandat 47.694 kb on - strandat 47.783 kb on + strandat 47.785 kb on + strandat 47.785 kb on + strandat 47.821 kb on - strandat 47.826 kb on + strandat 47.910 kb on + strandat 47.917 kb on - strandat 47.940 kb on - strandat 47.961 kb on + strandat 47.961 kb on + strandat 47.978 kb on + strand, within BACOVA_02651at 47.979 kb on - strand, within BACOVA_02651at 48.019 kb on - strand, within BACOVA_02651at 48.049 kb on - strand, within BACOVA_02651at 48.056 kb on + strand, within BACOVA_02651at 48.056 kb on + strand, within BACOVA_02651at 48.060 kb on + strand, within BACOVA_02651at 48.060 kb on + strand, within BACOVA_02651at 48.094 kb on + strand, within BACOVA_02651at 48.117 kb on - strand, within BACOVA_02651at 48.202 kb on + strand, within BACOVA_02651at 48.219 kb on - strand, within BACOVA_02651at 48.243 kb on + strand, within BACOVA_02651at 48.243 kb on + strand, within BACOVA_02651at 48.273 kb on - strand, within BACOVA_02651at 48.292 kb on + strand, within BACOVA_02651at 48.306 kb on - strand, within BACOVA_02651at 48.309 kb on + strand, within BACOVA_02651at 48.312 kb on + strand, within BACOVA_02651at 48.312 kb on + strand, within BACOVA_02651at 48.348 kb on + strand, within BACOVA_02651at 48.402 kb on + strand, within BACOVA_02651at 48.402 kb on + strand, within BACOVA_02651at 48.402 kb on + strand, within BACOVA_02651at 48.402 kb on + strand, within BACOVA_02651at 48.403 kb on - strand, within BACOVA_02651at 48.403 kb on - strand, within BACOVA_02651at 48.404 kb on + strand, within BACOVA_02651at 48.404 kb on + strand, within BACOVA_02651at 48.404 kb on + strand, within BACOVA_02651at 48.405 kb on - strand, within BACOVA_02651at 48.405 kb on - strand, within BACOVA_02651at 48.405 kb on - strand, within BACOVA_02651at 48.409 kb on - strand, within BACOVA_02651at 48.409 kb on - strand, within BACOVA_02651at 48.409 kb on - strand, within BACOVA_02651at 48.409 kb on - strand, within BACOVA_02651at 48.423 kb on + strand, within BACOVA_02651at 48.443 kb on + strand, within BACOVA_02651at 48.444 kb on - strand, within BACOVA_02651at 48.483 kb on + strand, within BACOVA_02651at 48.483 kb on + strand, within BACOVA_02651at 48.484 kb on - strand, within BACOVA_02651at 48.498 kb on - strand, within BACOVA_02651at 48.510 kb on + strand, within BACOVA_02651at 48.511 kb on - strand, within BACOVA_02651at 48.512 kb on + strand, within BACOVA_02651at 48.517 kb on - strand, within BACOVA_02651at 48.527 kb on + strand, within BACOVA_02651at 48.527 kb on + strand, within BACOVA_02651at 48.528 kb on - strand, within BACOVA_02651at 48.531 kb on + strand, within BACOVA_02651at 48.531 kb on + strand, within BACOVA_02651at 48.594 kb on + strand, within BACOVA_02651at 48.654 kb on + strand, within BACOVA_02651at 48.654 kb on + strand, within BACOVA_02651at 48.655 kb on - strand, within BACOVA_02651at 48.663 kb on + strand, within BACOVA_02651at 48.665 kb on + strand, within BACOVA_02651at 48.665 kb on + strand, within BACOVA_02651at 48.665 kb on + strand, within BACOVA_02651at 48.666 kb on - strand, within BACOVA_02651at 48.666 kb on - strand, within BACOVA_02651at 48.684 kb on - strand, within BACOVA_02651at 48.684 kb on - strand, within BACOVA_02651at 48.709 kb on + strand, within BACOVA_02651at 48.731 kb on + strand, within BACOVA_02651

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
remove
45,445 + BACOVA_02649 0.54 +1.1
45,445 + BACOVA_02649 0.54 +0.0
45,446 - BACOVA_02649 0.54 +0.2
45,458 + BACOVA_02649 0.54 -1.8
45,511 + BACOVA_02649 0.57 -1.1
45,512 - BACOVA_02649 0.57 -0.1
45,512 - BACOVA_02649 0.57 +0.1
45,513 + BACOVA_02649 0.57 -0.9
45,514 - BACOVA_02649 0.58 -0.1
45,514 - BACOVA_02649 0.58 -0.3
45,544 - BACOVA_02649 0.59 +1.1
45,611 + BACOVA_02649 0.63 +0.1
45,611 + BACOVA_02649 0.63 +0.2
45,615 + BACOVA_02649 0.63 +0.7
45,652 + BACOVA_02649 0.65 -0.7
45,656 + BACOVA_02649 0.66 -2.0
45,657 - BACOVA_02649 0.66 +0.0
45,657 - BACOVA_02649 0.66 -0.4
45,673 - BACOVA_02649 0.67 +0.0
45,694 + BACOVA_02649 0.68 +0.3
45,695 + BACOVA_02649 0.68 -0.8
45,697 + BACOVA_02649 0.68 -0.6
45,697 + BACOVA_02649 0.68 -0.2
45,698 - BACOVA_02649 0.68 +0.1
45,698 - BACOVA_02649 0.68 -0.3
45,698 - BACOVA_02649 0.68 +0.2
45,702 - BACOVA_02649 0.68 -0.3
45,704 + BACOVA_02649 0.68 -0.1
45,722 - BACOVA_02649 0.69 +0.6
45,722 - BACOVA_02649 0.69 +1.4
45,786 + BACOVA_02649 0.73 +0.1
45,786 + BACOVA_02649 0.73 -0.1
45,786 + BACOVA_02649 0.73 -0.2
45,792 + BACOVA_02649 0.73 -1.9
45,792 + BACOVA_02649 0.73 -0.2
45,793 - BACOVA_02649 0.73 -0.9
45,839 - BACOVA_02649 0.76 -0.5
45,910 - BACOVA_02649 0.80 +0.3
45,910 - BACOVA_02649 0.80 +0.7
45,912 + BACOVA_02649 0.80 -0.3
45,912 + BACOVA_02649 0.80 -0.6
45,912 + BACOVA_02649 0.80 -0.4
45,913 - BACOVA_02649 0.80 -1.4
45,924 + BACOVA_02649 0.81 +1.1
45,936 - BACOVA_02649 0.81 -1.2
45,960 + BACOVA_02649 0.83 -0.7
45,960 + BACOVA_02649 0.83 -1.3
45,960 + BACOVA_02649 0.83 -0.2
45,960 + BACOVA_02649 0.83 -0.1
45,961 - BACOVA_02649 0.83 +0.4
46,041 + BACOVA_02649 0.87 -0.8
46,086 + -0.5
46,089 + -0.6
46,125 + +0.6
46,246 + -0.3
46,247 - +0.6
46,247 - +0.5
46,314 - -0.6
46,371 - -0.3
46,374 - -0.7
46,386 - +0.1
46,405 - -0.5
46,410 + -1.0
46,411 - -0.6
46,411 - -1.3
46,412 + +0.5
46,412 + +1.1
46,413 - +0.3
46,427 + +0.1
46,427 + -0.3
46,444 + +0.7
46,444 + +0.0
46,444 + -0.4
46,445 - -1.7
46,448 + +0.3
46,470 + +1.5
46,477 - BACOVA_02650 0.10 +0.2
46,670 + BACOVA_02650 0.23 -0.2
46,670 + BACOVA_02650 0.23 -1.1
46,671 - BACOVA_02650 0.23 +1.0
46,712 - BACOVA_02650 0.26 +0.1
46,757 + BACOVA_02650 0.29 -0.7
46,765 + BACOVA_02650 0.30 -1.1
46,765 + BACOVA_02650 0.30 +1.4
46,765 + BACOVA_02650 0.30 +0.2
46,835 - BACOVA_02650 0.34 +0.8
46,842 + BACOVA_02650 0.35 -0.7
46,882 - BACOVA_02650 0.38 -0.6
46,942 - BACOVA_02650 0.42 -0.6
46,949 + BACOVA_02650 0.42 +1.1
47,010 - BACOVA_02650 0.46 +1.0
47,025 + BACOVA_02650 0.47 +0.1
47,025 + BACOVA_02650 0.47 -0.1
47,048 + BACOVA_02650 0.49 -0.2
47,048 + BACOVA_02650 0.49 -0.3
47,049 - BACOVA_02650 0.49 +0.4
47,049 - BACOVA_02650 0.49 +0.7
47,054 + BACOVA_02650 0.49 +1.1
47,067 + BACOVA_02650 0.50 -1.8
47,097 - BACOVA_02650 0.52 -1.2
47,147 + BACOVA_02650 0.56 -1.0
47,158 - BACOVA_02650 0.56 +1.5
47,205 - BACOVA_02650 0.60 +0.1
47,215 + BACOVA_02650 0.60 -0.2
47,215 + BACOVA_02650 0.60 -1.0
47,222 + BACOVA_02650 0.61 +1.0
47,223 - BACOVA_02650 0.61 +1.1
47,226 + BACOVA_02650 0.61 -1.2
47,227 - BACOVA_02650 0.61 +0.1
47,227 - BACOVA_02650 0.61 +0.8
47,227 - BACOVA_02650 0.61 +0.1
47,241 + BACOVA_02650 0.62 -0.1
47,241 + BACOVA_02650 0.62 -1.2
47,299 + BACOVA_02650 0.66 +0.9
47,318 - BACOVA_02650 0.67 +0.8
47,318 - BACOVA_02650 0.67 -0.0
47,361 - BACOVA_02650 0.70 -1.7
47,361 - BACOVA_02650 0.70 -0.7
47,365 + BACOVA_02650 0.70 -0.4
47,366 - BACOVA_02650 0.71 -0.4
47,389 + BACOVA_02650 0.72 -0.9
47,389 + BACOVA_02650 0.72 -0.2
47,390 - BACOVA_02650 0.72 +0.5
47,419 + BACOVA_02650 0.74 -0.2
47,420 - BACOVA_02650 0.74 +0.2
47,420 - BACOVA_02650 0.74 +0.6
47,499 - BACOVA_02650 0.80 -0.1
47,511 + BACOVA_02650 0.80 -0.1
47,512 - BACOVA_02650 0.80 -0.1
47,512 - BACOVA_02650 0.80 +1.4
47,512 - BACOVA_02650 0.80 +0.4
47,512 - BACOVA_02650 0.80 -0.0
47,517 - BACOVA_02650 0.81 -1.0
47,517 - BACOVA_02650 0.81 -0.0
47,523 - BACOVA_02650 0.81 -0.9
47,533 + BACOVA_02650 0.82 -0.1
47,534 - BACOVA_02650 0.82 +0.2
47,550 - BACOVA_02650 0.83 -0.7
47,567 + BACOVA_02650 0.84 -0.0
47,567 + BACOVA_02650 0.84 -0.7
47,568 - BACOVA_02650 0.84 +0.0
47,569 + BACOVA_02650 0.84 +0.1
47,570 - BACOVA_02650 0.84 +0.8
47,570 - BACOVA_02650 0.84 +0.4
47,629 - BACOVA_02650 0.88 -1.9
47,636 + BACOVA_02650 0.89 +1.6
47,645 + BACOVA_02650 0.90 +0.1
47,645 + BACOVA_02650 0.90 +0.7
47,667 + +0.1
47,673 + +0.3
47,674 - +0.1
47,676 - +0.4
47,676 - -1.0
47,677 + +0.2
47,678 - -0.1
47,686 - +0.4
47,694 - -0.4
47,783 + +0.5
47,785 + +1.5
47,785 + +0.2
47,821 - +1.0
47,826 + -1.6
47,910 + -1.3
47,917 - -1.9
47,940 - +0.6
47,961 + +0.5
47,961 + -0.1
47,978 + BACOVA_02651 0.10 -1.2
47,979 - BACOVA_02651 0.10 +0.7
48,019 - BACOVA_02651 0.13 +0.9
48,049 - BACOVA_02651 0.14 -0.2
48,056 + BACOVA_02651 0.15 +0.0
48,056 + BACOVA_02651 0.15 -1.5
48,060 + BACOVA_02651 0.15 -0.6
48,060 + BACOVA_02651 0.15 -0.6
48,094 + BACOVA_02651 0.17 -0.8
48,117 - BACOVA_02651 0.19 +0.8
48,202 + BACOVA_02651 0.24 +1.2
48,219 - BACOVA_02651 0.25 +0.8
48,243 + BACOVA_02651 0.26 -0.0
48,243 + BACOVA_02651 0.26 +0.2
48,273 - BACOVA_02651 0.28 -0.1
48,292 + BACOVA_02651 0.29 -0.6
48,306 - BACOVA_02651 0.30 +2.4
48,309 + BACOVA_02651 0.30 +0.7
48,312 + BACOVA_02651 0.30 -0.3
48,312 + BACOVA_02651 0.30 +0.9
48,348 + BACOVA_02651 0.33 -0.5
48,402 + BACOVA_02651 0.36 -0.4
48,402 + BACOVA_02651 0.36 -0.2
48,402 + BACOVA_02651 0.36 +0.6
48,402 + BACOVA_02651 0.36 -0.9
48,403 - BACOVA_02651 0.36 +0.1
48,403 - BACOVA_02651 0.36 -1.9
48,404 + BACOVA_02651 0.36 -0.4
48,404 + BACOVA_02651 0.36 +0.1
48,404 + BACOVA_02651 0.36 +0.9
48,405 - BACOVA_02651 0.36 +0.3
48,405 - BACOVA_02651 0.36 -1.5
48,405 - BACOVA_02651 0.36 -0.6
48,409 - BACOVA_02651 0.36 +0.8
48,409 - BACOVA_02651 0.36 -1.6
48,409 - BACOVA_02651 0.36 -0.3
48,409 - BACOVA_02651 0.36 +0.1
48,423 + BACOVA_02651 0.37 +0.3
48,443 + BACOVA_02651 0.38 +0.6
48,444 - BACOVA_02651 0.39 +0.7
48,483 + BACOVA_02651 0.41 +1.4
48,483 + BACOVA_02651 0.41 -0.5
48,484 - BACOVA_02651 0.41 +0.9
48,498 - BACOVA_02651 0.42 -0.7
48,510 + BACOVA_02651 0.43 -0.3
48,511 - BACOVA_02651 0.43 -0.6
48,512 + BACOVA_02651 0.43 -1.1
48,517 - BACOVA_02651 0.43 -0.0
48,527 + BACOVA_02651 0.44 +0.5
48,527 + BACOVA_02651 0.44 +1.9
48,528 - BACOVA_02651 0.44 +0.3
48,531 + BACOVA_02651 0.44 -1.2
48,531 + BACOVA_02651 0.44 -0.8
48,594 + BACOVA_02651 0.48 +0.5
48,654 + BACOVA_02651 0.51 +0.9
48,654 + BACOVA_02651 0.51 -0.3
48,655 - BACOVA_02651 0.51 +0.1
48,663 + BACOVA_02651 0.52 -0.3
48,665 + BACOVA_02651 0.52 +0.6
48,665 + BACOVA_02651 0.52 -0.1
48,665 + BACOVA_02651 0.52 +0.8
48,666 - BACOVA_02651 0.52 +0.4
48,666 - BACOVA_02651 0.52 -0.5
48,684 - BACOVA_02651 0.53 +0.1
48,684 - BACOVA_02651 0.53 +0.2
48,709 + BACOVA_02651 0.55 +0.3
48,731 + BACOVA_02651 0.56 +2.1

Or see this region's nucleotide sequence