Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02561

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02560 and BACOVA_02561 are separated by 74 nucleotidesBACOVA_02561 and BACOVA_02562 are separated by 18 nucleotides BACOVA_02560: BACOVA_02560 - mannitol dehydrogenase domain protein, at 326,517 to 327,956 _02560 BACOVA_02561: BACOVA_02561 - FHA domain protein, at 328,031 to 328,564 _02561 BACOVA_02562: BACOVA_02562 - sporulation and cell division repeat protein, at 328,583 to 329,668 _02562 Position (kb) 328 329Strain fitness (log2 ratio) -2 -1 0 1 2at 327.047 kb on + strand, within BACOVA_02560at 327.047 kb on + strand, within BACOVA_02560at 327.067 kb on - strand, within BACOVA_02560at 327.073 kb on - strand, within BACOVA_02560at 327.133 kb on + strand, within BACOVA_02560at 327.135 kb on + strand, within BACOVA_02560at 327.136 kb on - strand, within BACOVA_02560at 327.316 kb on + strand, within BACOVA_02560at 327.317 kb on - strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.354 kb on - strand, within BACOVA_02560at 327.381 kb on - strand, within BACOVA_02560at 327.425 kb on - strand, within BACOVA_02560at 327.460 kb on - strand, within BACOVA_02560at 327.473 kb on - strand, within BACOVA_02560at 327.473 kb on - strand, within BACOVA_02560at 327.542 kb on - strand, within BACOVA_02560at 327.613 kb on - strand, within BACOVA_02560at 327.645 kb on + strand, within BACOVA_02560at 327.645 kb on + strand, within BACOVA_02560at 327.683 kb on - strand, within BACOVA_02560at 327.692 kb on - strand, within BACOVA_02560at 327.708 kb on + strand, within BACOVA_02560at 327.709 kb on - strand, within BACOVA_02560at 327.713 kb on + strand, within BACOVA_02560at 327.713 kb on + strand, within BACOVA_02560at 327.714 kb on - strand, within BACOVA_02560at 327.724 kb on + strand, within BACOVA_02560at 327.725 kb on - strand, within BACOVA_02560at 327.845 kb on + strandat 328.025 kb on + strandat 328.032 kb on + strandat 328.057 kb on + strandat 328.064 kb on - strandat 328.067 kb on - strandat 328.084 kb on + strandat 328.099 kb on + strand, within BACOVA_02561at 328.104 kb on - strand, within BACOVA_02561at 328.114 kb on + strand, within BACOVA_02561at 328.114 kb on + strand, within BACOVA_02561at 328.156 kb on + strand, within BACOVA_02561at 328.157 kb on - strand, within BACOVA_02561at 328.157 kb on - strand, within BACOVA_02561at 328.170 kb on - strand, within BACOVA_02561at 328.196 kb on - strand, within BACOVA_02561at 328.199 kb on - strand, within BACOVA_02561at 328.208 kb on - strand, within BACOVA_02561at 328.241 kb on - strand, within BACOVA_02561at 328.261 kb on + strand, within BACOVA_02561at 328.265 kb on - strand, within BACOVA_02561at 328.265 kb on - strand, within BACOVA_02561at 328.322 kb on + strand, within BACOVA_02561at 328.340 kb on + strand, within BACOVA_02561at 328.361 kb on - strand, within BACOVA_02561at 328.426 kb on + strand, within BACOVA_02561at 328.484 kb on + strand, within BACOVA_02561at 328.484 kb on + strand, within BACOVA_02561at 328.507 kb on - strand, within BACOVA_02561at 328.507 kb on - strand, within BACOVA_02561at 328.507 kb on - strand, within BACOVA_02561at 328.610 kb on - strandat 328.628 kb on + strandat 328.666 kb on + strandat 328.997 kb on - strand, within BACOVA_02562at 329.034 kb on - strand, within BACOVA_02562at 329.071 kb on - strand, within BACOVA_02562at 329.127 kb on - strand, within BACOVA_02562at 329.164 kb on - strand, within BACOVA_02562at 329.180 kb on - strand, within BACOVA_02562at 329.262 kb on - strand, within BACOVA_02562at 329.301 kb on - strand, within BACOVA_02562at 329.306 kb on - strand, within BACOVA_02562at 329.338 kb on - strand, within BACOVA_02562at 329.461 kb on - strand, within BACOVA_02562at 329.473 kb on - strand, within BACOVA_02562at 329.549 kb on - strand, within BACOVA_02562

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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327,047 + BACOVA_02560 0.37 -0.4
327,047 + BACOVA_02560 0.37 -0.1
327,067 - BACOVA_02560 0.38 -1.5
327,073 - BACOVA_02560 0.39 -0.8
327,133 + BACOVA_02560 0.43 -0.9
327,135 + BACOVA_02560 0.43 +0.6
327,136 - BACOVA_02560 0.43 -0.8
327,316 + BACOVA_02560 0.55 -0.6
327,317 - BACOVA_02560 0.56 -0.3
327,353 + BACOVA_02560 0.58 -1.6
327,353 + BACOVA_02560 0.58 -0.0
327,353 + BACOVA_02560 0.58 -1.7
327,354 - BACOVA_02560 0.58 +0.2
327,381 - BACOVA_02560 0.60 -1.0
327,425 - BACOVA_02560 0.63 -1.5
327,460 - BACOVA_02560 0.65 +0.4
327,473 - BACOVA_02560 0.66 -0.6
327,473 - BACOVA_02560 0.66 +0.6
327,542 - BACOVA_02560 0.71 +0.1
327,613 - BACOVA_02560 0.76 -1.1
327,645 + BACOVA_02560 0.78 -0.4
327,645 + BACOVA_02560 0.78 -2.3
327,683 - BACOVA_02560 0.81 -2.2
327,692 - BACOVA_02560 0.82 -1.2
327,708 + BACOVA_02560 0.83 -0.4
327,709 - BACOVA_02560 0.83 -0.8
327,713 + BACOVA_02560 0.83 -0.3
327,713 + BACOVA_02560 0.83 +0.5
327,714 - BACOVA_02560 0.83 -0.7
327,724 + BACOVA_02560 0.84 -0.9
327,725 - BACOVA_02560 0.84 +0.6
327,845 + -0.7
328,025 + -1.2
328,032 + +0.8
328,057 + -0.6
328,064 - -0.2
328,067 - +0.6
328,084 + +0.9
328,099 + BACOVA_02561 0.13 +1.8
328,104 - BACOVA_02561 0.14 +1.2
328,114 + BACOVA_02561 0.16 -1.2
328,114 + BACOVA_02561 0.16 +1.0
328,156 + BACOVA_02561 0.23 -0.2
328,157 - BACOVA_02561 0.24 +0.4
328,157 - BACOVA_02561 0.24 -0.2
328,170 - BACOVA_02561 0.26 +0.7
328,196 - BACOVA_02561 0.31 -1.3
328,199 - BACOVA_02561 0.31 -0.2
328,208 - BACOVA_02561 0.33 +1.0
328,241 - BACOVA_02561 0.39 -1.6
328,261 + BACOVA_02561 0.43 -1.4
328,265 - BACOVA_02561 0.44 -0.7
328,265 - BACOVA_02561 0.44 +0.5
328,322 + BACOVA_02561 0.54 +0.4
328,340 + BACOVA_02561 0.58 +0.6
328,361 - BACOVA_02561 0.62 +0.4
328,426 + BACOVA_02561 0.74 -0.0
328,484 + BACOVA_02561 0.85 +0.6
328,484 + BACOVA_02561 0.85 -0.4
328,507 - BACOVA_02561 0.89 -0.2
328,507 - BACOVA_02561 0.89 +1.2
328,507 - BACOVA_02561 0.89 -0.8
328,610 - -0.6
328,628 + -1.0
328,666 + -0.4
328,997 - BACOVA_02562 0.38 +1.5
329,034 - BACOVA_02562 0.42 +0.2
329,071 - BACOVA_02562 0.45 -2.0
329,127 - BACOVA_02562 0.50 -0.1
329,164 - BACOVA_02562 0.53 -0.4
329,180 - BACOVA_02562 0.55 +0.7
329,262 - BACOVA_02562 0.63 -1.0
329,301 - BACOVA_02562 0.66 +0.0
329,306 - BACOVA_02562 0.67 -0.3
329,338 - BACOVA_02562 0.70 -0.0
329,461 - BACOVA_02562 0.81 -1.0
329,473 - BACOVA_02562 0.82 -0.6
329,549 - BACOVA_02562 0.89 -0.2

Or see this region's nucleotide sequence