Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02559

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02558 and BACOVA_02559 are separated by 198 nucleotidesBACOVA_02559 and BACOVA_02560 are separated by 26 nucleotides BACOVA_02558: BACOVA_02558 - glucuronate isomerase, at 323,818 to 325,224 _02558 BACOVA_02559: BACOVA_02559 - transcriptional regulator, LacI family, at 325,423 to 326,490 _02559 BACOVA_02560: BACOVA_02560 - mannitol dehydrogenase domain protein, at 326,517 to 327,956 _02560 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1at 324.441 kb on - strand, within BACOVA_02558at 324.442 kb on + strand, within BACOVA_02558at 324.447 kb on + strand, within BACOVA_02558at 324.478 kb on - strand, within BACOVA_02558at 324.492 kb on - strand, within BACOVA_02558at 324.504 kb on + strand, within BACOVA_02558at 324.505 kb on - strand, within BACOVA_02558at 324.574 kb on + strand, within BACOVA_02558at 324.574 kb on - strand, within BACOVA_02558at 324.604 kb on + strand, within BACOVA_02558at 324.605 kb on - strand, within BACOVA_02558at 324.622 kb on + strand, within BACOVA_02558at 324.685 kb on + strand, within BACOVA_02558at 324.728 kb on + strand, within BACOVA_02558at 324.772 kb on + strand, within BACOVA_02558at 324.773 kb on - strand, within BACOVA_02558at 324.871 kb on + strand, within BACOVA_02558at 324.882 kb on + strand, within BACOVA_02558at 324.941 kb on + strand, within BACOVA_02558at 324.942 kb on - strand, within BACOVA_02558at 324.942 kb on - strand, within BACOVA_02558at 324.942 kb on - strand, within BACOVA_02558at 325.015 kb on + strand, within BACOVA_02558at 325.027 kb on - strand, within BACOVA_02558at 325.092 kb on - strandat 325.103 kb on - strandat 325.117 kb on - strandat 325.229 kb on - strandat 325.416 kb on + strandat 325.417 kb on - strandat 325.439 kb on - strandat 325.441 kb on - strandat 325.541 kb on + strand, within BACOVA_02559at 325.631 kb on + strand, within BACOVA_02559at 325.636 kb on + strand, within BACOVA_02559at 325.640 kb on - strand, within BACOVA_02559at 325.641 kb on + strand, within BACOVA_02559at 325.644 kb on - strand, within BACOVA_02559at 325.700 kb on + strand, within BACOVA_02559at 325.700 kb on + strand, within BACOVA_02559at 325.719 kb on + strand, within BACOVA_02559at 325.726 kb on + strand, within BACOVA_02559at 325.736 kb on - strand, within BACOVA_02559at 325.760 kb on - strand, within BACOVA_02559at 325.780 kb on - strand, within BACOVA_02559at 325.782 kb on - strand, within BACOVA_02559at 325.852 kb on + strand, within BACOVA_02559at 325.877 kb on - strand, within BACOVA_02559at 325.922 kb on - strand, within BACOVA_02559at 325.941 kb on + strand, within BACOVA_02559at 325.942 kb on - strand, within BACOVA_02559at 325.981 kb on + strand, within BACOVA_02559at 326.023 kb on - strand, within BACOVA_02559at 326.029 kb on - strand, within BACOVA_02559at 326.029 kb on - strand, within BACOVA_02559at 326.101 kb on - strand, within BACOVA_02559at 326.104 kb on - strand, within BACOVA_02559at 326.112 kb on - strand, within BACOVA_02559at 326.126 kb on + strand, within BACOVA_02559at 326.211 kb on - strand, within BACOVA_02559at 326.242 kb on + strand, within BACOVA_02559at 326.242 kb on + strand, within BACOVA_02559at 326.279 kb on + strand, within BACOVA_02559at 326.313 kb on - strand, within BACOVA_02559at 326.369 kb on - strand, within BACOVA_02559at 326.407 kb on - strandat 326.426 kb on + strandat 326.431 kb on + strandat 326.486 kb on + strandat 326.502 kb on + strandat 326.513 kb on + strandat 326.514 kb on - strandat 326.567 kb on + strandat 326.618 kb on + strandat 326.625 kb on - strandat 326.659 kb on + strandat 326.659 kb on + strandat 326.659 kb on + strandat 326.659 kb on + strandat 326.659 kb on + strandat 326.682 kb on - strand, within BACOVA_02560at 326.687 kb on + strand, within BACOVA_02560at 326.810 kb on + strand, within BACOVA_02560at 326.828 kb on + strand, within BACOVA_02560at 326.876 kb on + strand, within BACOVA_02560at 326.910 kb on - strand, within BACOVA_02560at 326.994 kb on - strand, within BACOVA_02560at 327.011 kb on + strand, within BACOVA_02560at 327.047 kb on + strand, within BACOVA_02560at 327.047 kb on + strand, within BACOVA_02560at 327.067 kb on - strand, within BACOVA_02560at 327.073 kb on - strand, within BACOVA_02560at 327.133 kb on + strand, within BACOVA_02560at 327.135 kb on + strand, within BACOVA_02560at 327.136 kb on - strand, within BACOVA_02560at 327.316 kb on + strand, within BACOVA_02560at 327.317 kb on - strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.353 kb on + strand, within BACOVA_02560at 327.354 kb on - strand, within BACOVA_02560at 327.381 kb on - strand, within BACOVA_02560at 327.425 kb on - strand, within BACOVA_02560at 327.460 kb on - strand, within BACOVA_02560at 327.473 kb on - strand, within BACOVA_02560at 327.473 kb on - strand, within BACOVA_02560

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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324,441 - BACOVA_02558 0.44 -2.1
324,442 + BACOVA_02558 0.44 +0.8
324,447 + BACOVA_02558 0.45 -2.4
324,478 - BACOVA_02558 0.47 -0.8
324,492 - BACOVA_02558 0.48 -1.6
324,504 + BACOVA_02558 0.49 -0.8
324,505 - BACOVA_02558 0.49 -1.5
324,574 + BACOVA_02558 0.54 -0.8
324,574 - BACOVA_02558 0.54 -1.1
324,604 + BACOVA_02558 0.56 +1.4
324,605 - BACOVA_02558 0.56 -1.0
324,622 + BACOVA_02558 0.57 -0.0
324,685 + BACOVA_02558 0.62 -0.6
324,728 + BACOVA_02558 0.65 -2.1
324,772 + BACOVA_02558 0.68 -0.6
324,773 - BACOVA_02558 0.68 +0.9
324,871 + BACOVA_02558 0.75 -0.4
324,882 + BACOVA_02558 0.76 -0.0
324,941 + BACOVA_02558 0.80 -1.0
324,942 - BACOVA_02558 0.80 -3.1
324,942 - BACOVA_02558 0.80 -0.2
324,942 - BACOVA_02558 0.80 +1.2
325,015 + BACOVA_02558 0.85 +1.1
325,027 - BACOVA_02558 0.86 -1.2
325,092 - -1.3
325,103 - +0.6
325,117 - -0.7
325,229 - -0.3
325,416 + -1.0
325,417 - +0.2
325,439 - -1.6
325,441 - -0.6
325,541 + BACOVA_02559 0.11 -0.9
325,631 + BACOVA_02559 0.19 +1.6
325,636 + BACOVA_02559 0.20 +0.8
325,640 - BACOVA_02559 0.20 -2.2
325,641 + BACOVA_02559 0.20 +0.1
325,644 - BACOVA_02559 0.21 -0.0
325,700 + BACOVA_02559 0.26 -1.0
325,700 + BACOVA_02559 0.26 -0.4
325,719 + BACOVA_02559 0.28 -0.2
325,726 + BACOVA_02559 0.28 -0.3
325,736 - BACOVA_02559 0.29 -1.5
325,760 - BACOVA_02559 0.32 -1.6
325,780 - BACOVA_02559 0.33 -0.8
325,782 - BACOVA_02559 0.34 -1.2
325,852 + BACOVA_02559 0.40 +1.1
325,877 - BACOVA_02559 0.43 -0.4
325,922 - BACOVA_02559 0.47 +0.0
325,941 + BACOVA_02559 0.49 -1.2
325,942 - BACOVA_02559 0.49 -1.2
325,981 + BACOVA_02559 0.52 -1.7
326,023 - BACOVA_02559 0.56 -0.3
326,029 - BACOVA_02559 0.57 +0.2
326,029 - BACOVA_02559 0.57 +0.2
326,101 - BACOVA_02559 0.63 -1.5
326,104 - BACOVA_02559 0.64 -1.1
326,112 - BACOVA_02559 0.65 +0.4
326,126 + BACOVA_02559 0.66 -0.0
326,211 - BACOVA_02559 0.74 -0.0
326,242 + BACOVA_02559 0.77 -0.2
326,242 + BACOVA_02559 0.77 -0.2
326,279 + BACOVA_02559 0.80 -0.1
326,313 - BACOVA_02559 0.83 -1.2
326,369 - BACOVA_02559 0.89 -0.5
326,407 - +1.4
326,426 + -0.3
326,431 + -0.9
326,486 + +1.4
326,502 + -1.8
326,513 + -0.9
326,514 - -0.8
326,567 + -1.6
326,618 + -0.4
326,625 - -0.4
326,659 + -2.6
326,659 + +0.6
326,659 + -0.4
326,659 + -1.8
326,659 + -0.9
326,682 - BACOVA_02560 0.11 -1.8
326,687 + BACOVA_02560 0.12 -0.4
326,810 + BACOVA_02560 0.20 +0.2
326,828 + BACOVA_02560 0.22 -0.7
326,876 + BACOVA_02560 0.25 -2.8
326,910 - BACOVA_02560 0.27 -0.9
326,994 - BACOVA_02560 0.33 -0.2
327,011 + BACOVA_02560 0.34 +0.3
327,047 + BACOVA_02560 0.37 -0.4
327,047 + BACOVA_02560 0.37 -0.1
327,067 - BACOVA_02560 0.38 -1.5
327,073 - BACOVA_02560 0.39 -0.8
327,133 + BACOVA_02560 0.43 -0.9
327,135 + BACOVA_02560 0.43 +0.6
327,136 - BACOVA_02560 0.43 -0.8
327,316 + BACOVA_02560 0.55 -0.6
327,317 - BACOVA_02560 0.56 -0.3
327,353 + BACOVA_02560 0.58 -1.6
327,353 + BACOVA_02560 0.58 -0.0
327,353 + BACOVA_02560 0.58 -1.7
327,354 - BACOVA_02560 0.58 +0.2
327,381 - BACOVA_02560 0.60 -1.0
327,425 - BACOVA_02560 0.63 -1.5
327,460 - BACOVA_02560 0.65 +0.4
327,473 - BACOVA_02560 0.66 -0.6
327,473 - BACOVA_02560 0.66 +0.6

Or see this region's nucleotide sequence