Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02551

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02549 and BACOVA_02550 are separated by 93 nucleotidesBACOVA_02550 and BACOVA_02551 are separated by 90 nucleotidesBACOVA_02551 and BACOVA_02552 are separated by 144 nucleotidesBACOVA_02552 and BACOVA_02553 are separated by 112 nucleotides BACOVA_02549: BACOVA_02549 - hypothetical protein, at 318,481 to 319,032 _02549 BACOVA_02550: BACOVA_02550 - DoxX family protein, at 319,126 to 319,575 _02550 BACOVA_02551: BACOVA_02551 - hypothetical protein, at 319,666 to 320,100 _02551 BACOVA_02552: BACOVA_02552 - hypothetical protein, at 320,245 to 320,493 _02552 BACOVA_02553: BACOVA_02553 - hypothetical protein, at 320,606 to 321,028 _02553 Position (kb) 319 320 321Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 318.671 kb on + strand, within BACOVA_02549at 318.706 kb on - strand, within BACOVA_02549at 318.706 kb on - strand, within BACOVA_02549at 318.706 kb on - strand, within BACOVA_02549at 318.708 kb on + strand, within BACOVA_02549at 318.708 kb on + strand, within BACOVA_02549at 318.743 kb on + strand, within BACOVA_02549at 318.744 kb on - strand, within BACOVA_02549at 318.744 kb on - strand, within BACOVA_02549at 318.763 kb on + strand, within BACOVA_02549at 318.764 kb on - strand, within BACOVA_02549at 318.781 kb on + strand, within BACOVA_02549at 318.787 kb on - strand, within BACOVA_02549at 318.829 kb on - strand, within BACOVA_02549at 318.832 kb on + strand, within BACOVA_02549at 318.832 kb on + strand, within BACOVA_02549at 318.902 kb on - strand, within BACOVA_02549at 318.950 kb on - strand, within BACOVA_02549at 318.965 kb on - strand, within BACOVA_02549at 318.983 kb on - strandat 318.988 kb on - strandat 318.988 kb on - strandat 318.997 kb on + strandat 318.998 kb on - strandat 319.078 kb on + strandat 319.078 kb on + strandat 319.078 kb on + strandat 319.079 kb on - strandat 319.079 kb on - strandat 319.079 kb on - strandat 319.092 kb on + strandat 319.092 kb on + strandat 319.176 kb on + strand, within BACOVA_02550at 319.176 kb on + strand, within BACOVA_02550at 319.177 kb on - strand, within BACOVA_02550at 319.177 kb on - strand, within BACOVA_02550at 319.210 kb on - strand, within BACOVA_02550at 319.211 kb on + strand, within BACOVA_02550at 319.211 kb on + strand, within BACOVA_02550at 319.211 kb on + strand, within BACOVA_02550at 319.231 kb on + strand, within BACOVA_02550at 319.297 kb on + strand, within BACOVA_02550at 319.351 kb on - strand, within BACOVA_02550at 319.399 kb on + strand, within BACOVA_02550at 319.432 kb on + strand, within BACOVA_02550at 319.455 kb on + strand, within BACOVA_02550at 319.455 kb on + strand, within BACOVA_02550at 319.471 kb on - strand, within BACOVA_02550at 319.483 kb on + strand, within BACOVA_02550at 319.484 kb on - strand, within BACOVA_02550at 319.486 kb on + strand, within BACOVA_02550at 319.487 kb on - strand, within BACOVA_02550at 319.487 kb on - strand, within BACOVA_02550at 319.487 kb on - strand, within BACOVA_02550at 319.489 kb on + strand, within BACOVA_02550at 319.517 kb on - strand, within BACOVA_02550at 319.575 kb on + strandat 319.600 kb on - strandat 319.611 kb on + strandat 319.678 kb on + strandat 319.686 kb on - strandat 319.720 kb on - strand, within BACOVA_02551at 319.730 kb on - strand, within BACOVA_02551at 319.798 kb on + strand, within BACOVA_02551at 319.798 kb on + strand, within BACOVA_02551at 319.811 kb on - strand, within BACOVA_02551at 319.815 kb on + strand, within BACOVA_02551at 319.817 kb on + strand, within BACOVA_02551at 319.854 kb on + strand, within BACOVA_02551at 319.854 kb on + strand, within BACOVA_02551at 319.856 kb on + strand, within BACOVA_02551at 319.857 kb on - strand, within BACOVA_02551at 319.858 kb on + strand, within BACOVA_02551at 319.859 kb on - strand, within BACOVA_02551at 319.859 kb on - strand, within BACOVA_02551at 319.891 kb on + strand, within BACOVA_02551at 319.892 kb on - strand, within BACOVA_02551at 319.944 kb on + strand, within BACOVA_02551at 319.947 kb on - strand, within BACOVA_02551at 319.959 kb on - strand, within BACOVA_02551at 319.980 kb on + strand, within BACOVA_02551at 319.985 kb on - strand, within BACOVA_02551at 319.993 kb on + strand, within BACOVA_02551at 319.994 kb on - strand, within BACOVA_02551at 320.077 kb on + strandat 320.080 kb on + strandat 320.105 kb on - strandat 320.114 kb on - strandat 320.116 kb on + strandat 320.135 kb on + strandat 320.136 kb on - strandat 320.172 kb on + strandat 320.172 kb on + strandat 320.198 kb on - strandat 320.238 kb on + strandat 320.239 kb on - strandat 320.239 kb on - strandat 320.256 kb on + strandat 320.256 kb on + strandat 320.257 kb on - strandat 320.260 kb on + strandat 320.261 kb on - strandat 320.355 kb on + strand, within BACOVA_02552at 320.356 kb on - strand, within BACOVA_02552at 320.364 kb on + strand, within BACOVA_02552at 320.374 kb on - strand, within BACOVA_02552at 320.442 kb on + strand, within BACOVA_02552at 320.454 kb on - strand, within BACOVA_02552at 320.492 kb on - strandat 320.535 kb on - strandat 320.537 kb on - strandat 320.550 kb on - strandat 320.584 kb on + strandat 320.592 kb on + strandat 320.699 kb on - strand, within BACOVA_02553at 321.036 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
remove
318,671 + BACOVA_02549 0.34 -0.1
318,706 - BACOVA_02549 0.41 -0.0
318,706 - BACOVA_02549 0.41 -0.2
318,706 - BACOVA_02549 0.41 -1.4
318,708 + BACOVA_02549 0.41 -1.9
318,708 + BACOVA_02549 0.41 +0.2
318,743 + BACOVA_02549 0.47 -0.2
318,744 - BACOVA_02549 0.48 -1.3
318,744 - BACOVA_02549 0.48 +0.3
318,763 + BACOVA_02549 0.51 +0.2
318,764 - BACOVA_02549 0.51 -0.0
318,781 + BACOVA_02549 0.54 +0.5
318,787 - BACOVA_02549 0.55 +0.3
318,829 - BACOVA_02549 0.63 +0.2
318,832 + BACOVA_02549 0.64 -0.5
318,832 + BACOVA_02549 0.64 +1.0
318,902 - BACOVA_02549 0.76 -3.2
318,950 - BACOVA_02549 0.85 -0.1
318,965 - BACOVA_02549 0.88 -1.1
318,983 - +1.2
318,988 - -0.4
318,988 - +0.8
318,997 + -0.6
318,998 - +0.4
319,078 + +1.0
319,078 + +1.2
319,078 + -0.2
319,079 - -1.3
319,079 - -0.6
319,079 - -0.2
319,092 + +0.5
319,092 + +2.2
319,176 + BACOVA_02550 0.11 +0.2
319,176 + BACOVA_02550 0.11 +1.2
319,177 - BACOVA_02550 0.11 -0.4
319,177 - BACOVA_02550 0.11 -0.7
319,210 - BACOVA_02550 0.19 +0.8
319,211 + BACOVA_02550 0.19 -0.0
319,211 + BACOVA_02550 0.19 -0.3
319,211 + BACOVA_02550 0.19 +1.5
319,231 + BACOVA_02550 0.23 -1.5
319,297 + BACOVA_02550 0.38 -1.2
319,351 - BACOVA_02550 0.50 -0.6
319,399 + BACOVA_02550 0.61 -0.0
319,432 + BACOVA_02550 0.68 +1.0
319,455 + BACOVA_02550 0.73 +0.6
319,455 + BACOVA_02550 0.73 +0.9
319,471 - BACOVA_02550 0.77 -0.1
319,483 + BACOVA_02550 0.79 -2.7
319,484 - BACOVA_02550 0.80 +1.4
319,486 + BACOVA_02550 0.80 +0.7
319,487 - BACOVA_02550 0.80 -1.2
319,487 - BACOVA_02550 0.80 +1.2
319,487 - BACOVA_02550 0.80 -0.5
319,489 + BACOVA_02550 0.81 -1.5
319,517 - BACOVA_02550 0.87 +0.7
319,575 + -0.7
319,600 - +0.7
319,611 + -2.2
319,678 + -0.9
319,686 - -0.2
319,720 - BACOVA_02551 0.12 -0.6
319,730 - BACOVA_02551 0.15 +2.4
319,798 + BACOVA_02551 0.30 +0.9
319,798 + BACOVA_02551 0.30 +0.6
319,811 - BACOVA_02551 0.33 +1.2
319,815 + BACOVA_02551 0.34 +2.8
319,817 + BACOVA_02551 0.35 -1.1
319,854 + BACOVA_02551 0.43 -0.4
319,854 + BACOVA_02551 0.43 -0.6
319,856 + BACOVA_02551 0.44 +0.5
319,857 - BACOVA_02551 0.44 -0.8
319,858 + BACOVA_02551 0.44 -1.8
319,859 - BACOVA_02551 0.44 -1.7
319,859 - BACOVA_02551 0.44 +0.9
319,891 + BACOVA_02551 0.52 +0.6
319,892 - BACOVA_02551 0.52 -1.5
319,944 + BACOVA_02551 0.64 +2.2
319,947 - BACOVA_02551 0.65 +2.0
319,959 - BACOVA_02551 0.67 -0.2
319,980 + BACOVA_02551 0.72 +0.8
319,985 - BACOVA_02551 0.73 -1.0
319,993 + BACOVA_02551 0.75 -0.0
319,994 - BACOVA_02551 0.75 -0.4
320,077 + -1.4
320,080 + +0.2
320,105 - -0.6
320,114 - +1.0
320,116 + +1.0
320,135 + -0.0
320,136 - -0.6
320,172 + -0.4
320,172 + +0.0
320,198 - +0.1
320,238 + -0.2
320,239 - -1.4
320,239 - +0.2
320,256 + -0.4
320,256 + -0.2
320,257 - -0.9
320,260 + -0.2
320,261 - -0.7
320,355 + BACOVA_02552 0.44 -1.5
320,356 - BACOVA_02552 0.45 -0.2
320,364 + BACOVA_02552 0.48 -1.2
320,374 - BACOVA_02552 0.52 +0.2
320,442 + BACOVA_02552 0.79 -1.2
320,454 - BACOVA_02552 0.84 +0.2
320,492 - -1.1
320,535 - +1.3
320,537 - -0.2
320,550 - -0.2
320,584 + +1.6
320,592 + -0.8
320,699 - BACOVA_02553 0.22 -0.3
321,036 - -0.2

Or see this region's nucleotide sequence