Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02106

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02105 and BACOVA_02106 are separated by 257 nucleotidesBACOVA_02106 and BACOVA_02107 are separated by 7 nucleotides BACOVA_02105: BACOVA_02105 - acetyl xylan esterase (AXE1), at 440,669 to 441,967 _02105 BACOVA_02106: BACOVA_02106 - hypothetical protein, at 442,225 to 444,291 _02106 BACOVA_02107: BACOVA_02107 - hypothetical protein, at 444,299 to 446,167 _02107 Position (kb) 442 443 444 445Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 441.447 kb on + strand, within BACOVA_02105at 441.482 kb on + strand, within BACOVA_02105at 441.619 kb on - strand, within BACOVA_02105at 441.768 kb on - strand, within BACOVA_02105at 441.768 kb on - strand, within BACOVA_02105at 441.803 kb on + strand, within BACOVA_02105at 441.840 kb on + strandat 441.911 kb on + strandat 441.912 kb on - strandat 441.968 kb on - strandat 441.968 kb on - strandat 441.968 kb on - strandat 441.968 kb on - strandat 442.000 kb on + strandat 442.003 kb on + strandat 442.003 kb on + strandat 442.004 kb on - strandat 442.004 kb on - strandat 442.023 kb on - strandat 442.023 kb on - strandat 442.025 kb on + strandat 442.074 kb on - strandat 442.133 kb on + strandat 442.180 kb on + strandat 442.203 kb on + strandat 442.204 kb on - strandat 442.204 kb on - strandat 442.204 kb on - strandat 442.234 kb on + strandat 442.235 kb on - strandat 442.241 kb on + strandat 442.247 kb on + strandat 442.248 kb on - strandat 442.273 kb on + strandat 442.286 kb on - strandat 442.383 kb on + strandat 442.384 kb on - strandat 442.393 kb on - strandat 442.427 kb on + strandat 442.538 kb on + strand, within BACOVA_02106at 442.561 kb on - strand, within BACOVA_02106at 442.563 kb on + strand, within BACOVA_02106at 442.563 kb on + strand, within BACOVA_02106at 442.565 kb on + strand, within BACOVA_02106at 442.565 kb on + strand, within BACOVA_02106at 442.566 kb on - strand, within BACOVA_02106at 442.627 kb on - strand, within BACOVA_02106at 442.683 kb on - strand, within BACOVA_02106at 442.683 kb on - strand, within BACOVA_02106at 442.704 kb on + strand, within BACOVA_02106at 442.705 kb on - strand, within BACOVA_02106at 442.707 kb on + strand, within BACOVA_02106at 442.785 kb on - strand, within BACOVA_02106at 442.787 kb on + strand, within BACOVA_02106at 442.787 kb on + strand, within BACOVA_02106at 442.787 kb on + strand, within BACOVA_02106at 442.787 kb on + strand, within BACOVA_02106at 442.787 kb on + strand, within BACOVA_02106at 442.788 kb on - strand, within BACOVA_02106at 442.788 kb on - strand, within BACOVA_02106at 442.843 kb on - strand, within BACOVA_02106at 442.843 kb on - strand, within BACOVA_02106at 442.844 kb on + strand, within BACOVA_02106at 442.844 kb on + strand, within BACOVA_02106at 442.898 kb on + strand, within BACOVA_02106at 442.960 kb on - strand, within BACOVA_02106at 442.960 kb on - strand, within BACOVA_02106at 443.000 kb on + strand, within BACOVA_02106at 443.008 kb on - strand, within BACOVA_02106at 443.010 kb on - strand, within BACOVA_02106at 443.094 kb on + strand, within BACOVA_02106at 443.287 kb on + strand, within BACOVA_02106at 443.288 kb on - strand, within BACOVA_02106at 443.315 kb on - strand, within BACOVA_02106at 443.315 kb on - strand, within BACOVA_02106at 443.346 kb on + strand, within BACOVA_02106at 443.347 kb on - strand, within BACOVA_02106at 443.355 kb on + strand, within BACOVA_02106at 443.356 kb on - strand, within BACOVA_02106at 443.418 kb on + strand, within BACOVA_02106at 443.445 kb on - strand, within BACOVA_02106at 443.445 kb on - strand, within BACOVA_02106at 443.445 kb on - strand, within BACOVA_02106at 443.526 kb on + strand, within BACOVA_02106at 443.527 kb on - strand, within BACOVA_02106at 443.570 kb on - strand, within BACOVA_02106at 443.622 kb on + strand, within BACOVA_02106at 443.626 kb on + strand, within BACOVA_02106at 443.657 kb on + strand, within BACOVA_02106at 443.657 kb on + strand, within BACOVA_02106at 443.658 kb on - strand, within BACOVA_02106at 443.661 kb on + strand, within BACOVA_02106at 443.661 kb on + strand, within BACOVA_02106at 443.662 kb on - strand, within BACOVA_02106at 443.662 kb on - strand, within BACOVA_02106at 443.673 kb on - strand, within BACOVA_02106at 443.685 kb on + strand, within BACOVA_02106at 443.735 kb on - strand, within BACOVA_02106at 443.808 kb on + strand, within BACOVA_02106at 443.895 kb on - strand, within BACOVA_02106at 443.927 kb on + strand, within BACOVA_02106at 443.947 kb on + strand, within BACOVA_02106at 443.948 kb on - strand, within BACOVA_02106at 443.950 kb on - strand, within BACOVA_02106at 443.990 kb on + strand, within BACOVA_02106at 443.990 kb on + strand, within BACOVA_02106at 444.173 kb on + strandat 444.173 kb on + strandat 444.174 kb on - strandat 444.178 kb on - strandat 444.178 kb on - strandat 444.186 kb on + strandat 444.186 kb on + strandat 444.186 kb on + strandat 444.187 kb on - strandat 444.187 kb on - strandat 444.191 kb on - strandat 444.191 kb on - strandat 444.216 kb on - strandat 444.218 kb on + strandat 444.219 kb on - strandat 444.246 kb on + strandat 444.251 kb on - strandat 444.266 kb on - strandat 444.291 kb on + strandat 444.292 kb on - strandat 444.429 kb on + strandat 444.430 kb on - strandat 444.433 kb on + strandat 444.434 kb on - strandat 444.451 kb on + strandat 444.452 kb on - strandat 444.478 kb on + strandat 444.478 kb on + strandat 444.479 kb on - strandat 444.483 kb on - strandat 444.483 kb on - strandat 444.483 kb on - strandat 444.483 kb on - strandat 444.485 kb on + strandat 444.508 kb on + strand, within BACOVA_02107at 444.508 kb on + strand, within BACOVA_02107at 444.521 kb on + strand, within BACOVA_02107at 444.557 kb on - strand, within BACOVA_02107at 444.618 kb on + strand, within BACOVA_02107at 444.758 kb on + strand, within BACOVA_02107at 444.759 kb on - strand, within BACOVA_02107at 444.759 kb on - strand, within BACOVA_02107at 444.760 kb on + strand, within BACOVA_02107at 444.776 kb on + strand, within BACOVA_02107at 444.777 kb on - strand, within BACOVA_02107at 444.777 kb on - strand, within BACOVA_02107at 444.780 kb on + strand, within BACOVA_02107at 444.780 kb on + strand, within BACOVA_02107at 444.823 kb on - strand, within BACOVA_02107at 444.823 kb on - strand, within BACOVA_02107at 444.860 kb on - strand, within BACOVA_02107at 444.869 kb on - strand, within BACOVA_02107at 444.901 kb on - strand, within BACOVA_02107at 444.903 kb on - strand, within BACOVA_02107at 444.903 kb on - strand, within BACOVA_02107at 444.903 kb on - strand, within BACOVA_02107at 444.989 kb on - strand, within BACOVA_02107at 444.989 kb on - strand, within BACOVA_02107at 445.063 kb on + strand, within BACOVA_02107at 445.069 kb on + strand, within BACOVA_02107at 445.070 kb on - strand, within BACOVA_02107at 445.072 kb on + strand, within BACOVA_02107at 445.074 kb on + strand, within BACOVA_02107at 445.084 kb on + strand, within BACOVA_02107at 445.085 kb on - strand, within BACOVA_02107at 445.137 kb on + strand, within BACOVA_02107at 445.190 kb on + strand, within BACOVA_02107at 445.196 kb on - strand, within BACOVA_02107at 445.196 kb on - strand, within BACOVA_02107at 445.196 kb on - strand, within BACOVA_02107

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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441,447 + BACOVA_02105 0.60 -0.0
441,482 + BACOVA_02105 0.63 +0.5
441,619 - BACOVA_02105 0.73 -0.0
441,768 - BACOVA_02105 0.85 +0.1
441,768 - BACOVA_02105 0.85 +0.2
441,803 + BACOVA_02105 0.87 -0.3
441,840 + +1.7
441,911 + -1.1
441,912 - +0.4
441,968 - +0.8
441,968 - +0.8
441,968 - -0.6
441,968 - +0.4
442,000 + -0.9
442,003 + +0.4
442,003 + +0.0
442,004 - +0.3
442,004 - -0.8
442,023 - +1.3
442,023 - +0.8
442,025 + +0.9
442,074 - -2.1
442,133 + -0.6
442,180 + +0.4
442,203 + -0.2
442,204 - -1.1
442,204 - -1.0
442,204 - -1.1
442,234 + +1.1
442,235 - +0.3
442,241 + -0.2
442,247 + +0.2
442,248 - -1.1
442,273 + +0.3
442,286 - -1.4
442,383 + -0.1
442,384 - +0.8
442,393 - -1.4
442,427 + -2.6
442,538 + BACOVA_02106 0.15 +2.4
442,561 - BACOVA_02106 0.16 -1.7
442,563 + BACOVA_02106 0.16 -0.8
442,563 + BACOVA_02106 0.16 -0.1
442,565 + BACOVA_02106 0.16 +0.0
442,565 + BACOVA_02106 0.16 +0.1
442,566 - BACOVA_02106 0.16 -1.4
442,627 - BACOVA_02106 0.19 -0.6
442,683 - BACOVA_02106 0.22 +0.4
442,683 - BACOVA_02106 0.22 -0.9
442,704 + BACOVA_02106 0.23 +0.0
442,705 - BACOVA_02106 0.23 +0.1
442,707 + BACOVA_02106 0.23 -0.4
442,785 - BACOVA_02106 0.27 +0.6
442,787 + BACOVA_02106 0.27 +0.0
442,787 + BACOVA_02106 0.27 -0.4
442,787 + BACOVA_02106 0.27 -1.3
442,787 + BACOVA_02106 0.27 -0.6
442,787 + BACOVA_02106 0.27 +0.2
442,788 - BACOVA_02106 0.27 -1.1
442,788 - BACOVA_02106 0.27 -0.2
442,843 - BACOVA_02106 0.30 +0.8
442,843 - BACOVA_02106 0.30 +1.1
442,844 + BACOVA_02106 0.30 +0.3
442,844 + BACOVA_02106 0.30 -0.5
442,898 + BACOVA_02106 0.33 -0.1
442,960 - BACOVA_02106 0.36 -2.2
442,960 - BACOVA_02106 0.36 +0.8
443,000 + BACOVA_02106 0.37 -0.0
443,008 - BACOVA_02106 0.38 -0.6
443,010 - BACOVA_02106 0.38 -1.5
443,094 + BACOVA_02106 0.42 +1.0
443,287 + BACOVA_02106 0.51 +1.2
443,288 - BACOVA_02106 0.51 +1.4
443,315 - BACOVA_02106 0.53 +0.3
443,315 - BACOVA_02106 0.53 +0.2
443,346 + BACOVA_02106 0.54 -0.4
443,347 - BACOVA_02106 0.54 +0.8
443,355 + BACOVA_02106 0.55 +0.7
443,356 - BACOVA_02106 0.55 -0.2
443,418 + BACOVA_02106 0.58 +1.4
443,445 - BACOVA_02106 0.59 +0.5
443,445 - BACOVA_02106 0.59 -0.1
443,445 - BACOVA_02106 0.59 +0.7
443,526 + BACOVA_02106 0.63 +2.0
443,527 - BACOVA_02106 0.63 -0.1
443,570 - BACOVA_02106 0.65 -1.2
443,622 + BACOVA_02106 0.68 -3.0
443,626 + BACOVA_02106 0.68 -0.1
443,657 + BACOVA_02106 0.69 -1.1
443,657 + BACOVA_02106 0.69 -1.4
443,658 - BACOVA_02106 0.69 +0.9
443,661 + BACOVA_02106 0.69 +1.3
443,661 + BACOVA_02106 0.69 +1.1
443,662 - BACOVA_02106 0.70 -0.2
443,662 - BACOVA_02106 0.70 +0.3
443,673 - BACOVA_02106 0.70 +1.4
443,685 + BACOVA_02106 0.71 -0.9
443,735 - BACOVA_02106 0.73 +0.1
443,808 + BACOVA_02106 0.77 -0.6
443,895 - BACOVA_02106 0.81 -0.5
443,927 + BACOVA_02106 0.82 -0.2
443,947 + BACOVA_02106 0.83 +0.0
443,948 - BACOVA_02106 0.83 -0.1
443,950 - BACOVA_02106 0.83 -0.8
443,990 + BACOVA_02106 0.85 -2.5
443,990 + BACOVA_02106 0.85 +0.2
444,173 + -0.2
444,173 + +1.3
444,174 - +1.0
444,178 - -1.4
444,178 - -0.3
444,186 + -0.2
444,186 + +0.1
444,186 + +0.1
444,187 - +1.1
444,187 - +1.0
444,191 - +0.6
444,191 - +0.5
444,216 - -0.2
444,218 + -0.5
444,219 - -0.6
444,246 + +2.1
444,251 - -3.4
444,266 - -0.3
444,291 + +0.9
444,292 - -1.1
444,429 + +0.2
444,430 - -2.0
444,433 + -0.3
444,434 - +0.2
444,451 + -0.4
444,452 - +0.1
444,478 + +0.1
444,478 + -0.1
444,479 - -1.2
444,483 - -1.2
444,483 - -0.6
444,483 - +0.6
444,483 - +0.6
444,485 + -1.0
444,508 + BACOVA_02107 0.11 +0.4
444,508 + BACOVA_02107 0.11 -0.1
444,521 + BACOVA_02107 0.12 +0.7
444,557 - BACOVA_02107 0.14 -0.1
444,618 + BACOVA_02107 0.17 -0.6
444,758 + BACOVA_02107 0.25 -0.1
444,759 - BACOVA_02107 0.25 +0.5
444,759 - BACOVA_02107 0.25 +0.9
444,760 + BACOVA_02107 0.25 -2.2
444,776 + BACOVA_02107 0.26 +0.8
444,777 - BACOVA_02107 0.26 +1.1
444,777 - BACOVA_02107 0.26 -1.5
444,780 + BACOVA_02107 0.26 -1.3
444,780 + BACOVA_02107 0.26 +0.4
444,823 - BACOVA_02107 0.28 -0.5
444,823 - BACOVA_02107 0.28 -1.2
444,860 - BACOVA_02107 0.30 -1.9
444,869 - BACOVA_02107 0.30 -1.4
444,901 - BACOVA_02107 0.32 -0.2
444,903 - BACOVA_02107 0.32 +1.4
444,903 - BACOVA_02107 0.32 -1.6
444,903 - BACOVA_02107 0.32 -0.9
444,989 - BACOVA_02107 0.37 -0.1
444,989 - BACOVA_02107 0.37 -2.9
445,063 + BACOVA_02107 0.41 -1.1
445,069 + BACOVA_02107 0.41 -0.3
445,070 - BACOVA_02107 0.41 -1.3
445,072 + BACOVA_02107 0.41 +0.1
445,074 + BACOVA_02107 0.41 -0.4
445,084 + BACOVA_02107 0.42 -0.9
445,085 - BACOVA_02107 0.42 -0.1
445,137 + BACOVA_02107 0.45 +0.7
445,190 + BACOVA_02107 0.48 +0.8
445,196 - BACOVA_02107 0.48 -0.1
445,196 - BACOVA_02107 0.48 -0.1
445,196 - BACOVA_02107 0.48 -1.5

Or see this region's nucleotide sequence