Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02049 and BACOVA_02050 are separated by 41 nucleotides BACOVA_02050 and BACOVA_02051 are separated by 83 nucleotides
BACOVA_02049: BACOVA_02049 - sugar-binding domain protein, at 355,199 to 356,317
_02049
BACOVA_02050: BACOVA_02050 - ribokinase, at 356,359 to 357,273
_02050
BACOVA_02051: BACOVA_02051 - TonB-linked outer membrane protein, SusC/RagA family, at 357,357 to 360,227
_02051
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.367 kb on + strand, within BACOVA_02049 at 355.368 kb on - strand, within BACOVA_02049 at 355.372 kb on - strand, within BACOVA_02049 at 355.381 kb on - strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.382 kb on + strand, within BACOVA_02049 at 355.387 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.411 kb on + strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.412 kb on - strand, within BACOVA_02049 at 355.432 kb on + strand, within BACOVA_02049 at 355.433 kb on - strand, within BACOVA_02049 at 355.442 kb on + strand, within BACOVA_02049 at 355.472 kb on - strand, within BACOVA_02049 at 355.479 kb on - strand, within BACOVA_02049 at 355.487 kb on + strand, within BACOVA_02049 at 355.504 kb on + strand, within BACOVA_02049 at 355.534 kb on + strand, within BACOVA_02049 at 355.536 kb on + strand, within BACOVA_02049 at 355.633 kb on + strand, within BACOVA_02049 at 355.634 kb on - strand, within BACOVA_02049 at 355.642 kb on + strand, within BACOVA_02049 at 355.664 kb on - strand, within BACOVA_02049 at 355.676 kb on - strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.678 kb on + strand, within BACOVA_02049 at 355.691 kb on + strand, within BACOVA_02049 at 355.698 kb on - strand, within BACOVA_02049 at 355.714 kb on - strand, within BACOVA_02049 at 355.725 kb on + strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.726 kb on - strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.739 kb on + strand, within BACOVA_02049 at 355.754 kb on - strand, within BACOVA_02049 at 355.795 kb on + strand, within BACOVA_02049 at 355.796 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.799 kb on - strand, within BACOVA_02049 at 355.801 kb on + strand, within BACOVA_02049 at 355.857 kb on - strand, within BACOVA_02049 at 355.862 kb on - strand, within BACOVA_02049 at 355.882 kb on + strand, within BACOVA_02049 at 355.883 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.934 kb on - strand, within BACOVA_02049 at 355.935 kb on + strand, within BACOVA_02049 at 355.936 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.940 kb on - strand, within BACOVA_02049 at 355.941 kb on + strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.942 kb on - strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.973 kb on + strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.974 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.976 kb on - strand, within BACOVA_02049 at 355.993 kb on + strand, within BACOVA_02049 at 355.997 kb on + strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 355.998 kb on - strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.018 kb on + strand, within BACOVA_02049 at 356.019 kb on - strand, within BACOVA_02049 at 356.020 kb on + strand, within BACOVA_02049 at 356.021 kb on - strand, within BACOVA_02049 at 356.023 kb on + strand, within BACOVA_02049 at 356.024 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.026 kb on - strand, within BACOVA_02049 at 356.108 kb on - strand, within BACOVA_02049 at 356.126 kb on - strand, within BACOVA_02049 at 356.164 kb on + strand, within BACOVA_02049 at 356.193 kb on - strand, within BACOVA_02049 at 356.343 kb on - strand at 356.343 kb on - strand at 356.347 kb on - strand at 356.347 kb on - strand at 356.356 kb on + strand at 356.356 kb on + strand at 356.357 kb on - strand at 356.382 kb on - strand at 356.391 kb on + strand at 356.398 kb on - strand at 356.494 kb on - strand, within BACOVA_02050 at 356.504 kb on + strand, within BACOVA_02050 at 356.540 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.544 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.610 kb on + strand, within BACOVA_02050 at 356.611 kb on - strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.614 kb on + strand, within BACOVA_02050 at 356.619 kb on - strand, within BACOVA_02050 at 356.625 kb on + strand, within BACOVA_02050 at 356.649 kb on - strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.721 kb on + strand, within BACOVA_02050 at 356.775 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.809 kb on + strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.810 kb on - strand, within BACOVA_02050 at 356.842 kb on - strand, within BACOVA_02050 at 356.849 kb on + strand, within BACOVA_02050 at 356.850 kb on - strand, within BACOVA_02050 at 356.852 kb on + strand, within BACOVA_02050 at 356.917 kb on - strand, within BACOVA_02050 at 356.996 kb on - strand, within BACOVA_02050 at 356.997 kb on + strand, within BACOVA_02050 at 357.015 kb on - strand, within BACOVA_02050 at 357.030 kb on + strand, within BACOVA_02050 at 357.031 kb on - strand, within BACOVA_02050 at 357.075 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.098 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.129 kb on + strand, within BACOVA_02050 at 357.130 kb on - strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.152 kb on + strand, within BACOVA_02050 at 357.189 kb on + strand at 357.190 kb on - strand at 357.191 kb on + strand at 357.202 kb on - strand at 357.202 kb on - strand at 357.243 kb on - strand at 357.246 kb on + strand at 357.247 kb on - strand at 357.247 kb on - strand at 357.249 kb on - strand at 357.266 kb on + strand at 357.267 kb on - strand at 357.272 kb on - strand at 357.281 kb on + strand at 357.282 kb on - strand at 357.282 kb on - strand at 357.332 kb on + strand at 357.332 kb on + strand at 357.341 kb on - strand at 357.341 kb on - strand at 357.371 kb on + strand at 357.372 kb on - strand at 357.395 kb on + strand at 357.395 kb on + strand at 357.467 kb on + strand at 357.467 kb on + strand at 357.468 kb on - strand at 357.468 kb on - strand at 357.468 kb on - strand at 357.517 kb on + strand at 357.518 kb on - strand at 357.518 kb on - strand at 357.524 kb on + strand at 357.527 kb on - strand at 357.527 kb on - strand at 357.527 kb on - strand at 357.531 kb on + strand at 357.531 kb on + strand at 357.531 kb on + strand at 357.532 kb on - strand at 357.532 kb on - strand at 357.532 kb on - strand at 357.536 kb on - strand at 357.540 kb on + strand at 357.583 kb on + strand at 357.583 kb on + strand at 357.586 kb on + strand at 357.625 kb on + strand at 357.723 kb on - strand, within BACOVA_02051 at 357.754 kb on + strand, within BACOVA_02051 at 357.761 kb on + strand, within BACOVA_02051 at 357.795 kb on + strand, within BACOVA_02051 at 357.802 kb on + strand, within BACOVA_02051 at 357.805 kb on + strand, within BACOVA_02051 at 357.847 kb on + strand, within BACOVA_02051 at 357.851 kb on + strand, within BACOVA_02051 at 357.888 kb on - strand, within BACOVA_02051 at 357.944 kb on + strand, within BACOVA_02051 at 357.944 kb on + strand, within BACOVA_02051 at 357.945 kb on - strand, within BACOVA_02051 at 357.949 kb on - strand, within BACOVA_02051 at 357.989 kb on + strand, within BACOVA_02051 at 358.024 kb on - strand, within BACOVA_02051 at 358.086 kb on + strand, within BACOVA_02051 at 358.097 kb on + strand, within BACOVA_02051 at 358.098 kb on - strand, within BACOVA_02051 at 358.175 kb on + strand, within BACOVA_02051 at 358.203 kb on - strand, within BACOVA_02051
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 355,367 + BACOVA_02049 0.15 +1.6 355,368 - BACOVA_02049 0.15 +0.0 355,372 - BACOVA_02049 0.15 -1.9 355,381 - BACOVA_02049 0.16 -2.6 355,382 + BACOVA_02049 0.16 +0.8 355,382 + BACOVA_02049 0.16 +1.5 355,387 + BACOVA_02049 0.17 -1.5 355,411 + BACOVA_02049 0.19 -0.3 355,411 + BACOVA_02049 0.19 -1.0 355,411 + BACOVA_02049 0.19 +0.4 355,411 + BACOVA_02049 0.19 -3.1 355,412 - BACOVA_02049 0.19 -2.3 355,412 - BACOVA_02049 0.19 +0.2 355,432 + BACOVA_02049 0.21 -0.4 355,433 - BACOVA_02049 0.21 -1.9 355,442 + BACOVA_02049 0.22 +0.4 355,472 - BACOVA_02049 0.24 -0.1 355,479 - BACOVA_02049 0.25 -2.2 355,487 + BACOVA_02049 0.26 -0.2 355,504 + BACOVA_02049 0.27 -0.5 355,534 + BACOVA_02049 0.30 -0.8 355,536 + BACOVA_02049 0.30 -0.9 355,633 + BACOVA_02049 0.39 -0.7 355,634 - BACOVA_02049 0.39 -0.8 355,642 + BACOVA_02049 0.40 -0.1 355,664 - BACOVA_02049 0.42 +0.4 355,676 - BACOVA_02049 0.43 -1.6 355,678 + BACOVA_02049 0.43 -0.9 355,678 + BACOVA_02049 0.43 -0.1 355,691 + BACOVA_02049 0.44 -0.2 355,698 - BACOVA_02049 0.45 +0.1 355,714 - BACOVA_02049 0.46 -1.7 355,725 + BACOVA_02049 0.47 +0.9 355,726 - BACOVA_02049 0.47 -1.2 355,726 - BACOVA_02049 0.47 -0.3 355,726 - BACOVA_02049 0.47 -1.3 355,739 + BACOVA_02049 0.48 -0.5 355,739 + BACOVA_02049 0.48 -1.2 355,754 - BACOVA_02049 0.50 -0.1 355,795 + BACOVA_02049 0.53 +1.1 355,796 - BACOVA_02049 0.53 -1.3 355,799 - BACOVA_02049 0.54 -0.7 355,799 - BACOVA_02049 0.54 -2.4 355,801 + BACOVA_02049 0.54 -0.1 355,857 - BACOVA_02049 0.59 +1.8 355,862 - BACOVA_02049 0.59 -0.4 355,882 + BACOVA_02049 0.61 -1.7 355,883 - BACOVA_02049 0.61 -0.6 355,934 - BACOVA_02049 0.66 +0.2 355,934 - BACOVA_02049 0.66 -0.6 355,935 + BACOVA_02049 0.66 -0.8 355,936 - BACOVA_02049 0.66 -2.2 355,940 - BACOVA_02049 0.66 -0.4 355,940 - BACOVA_02049 0.66 -1.6 355,941 + BACOVA_02049 0.66 -0.2 355,942 - BACOVA_02049 0.66 -0.4 355,942 - BACOVA_02049 0.66 -0.5 355,973 + BACOVA_02049 0.69 -0.8 355,973 + BACOVA_02049 0.69 +0.6 355,973 + BACOVA_02049 0.69 -1.8 355,973 + BACOVA_02049 0.69 -0.2 355,974 - BACOVA_02049 0.69 -0.4 355,974 - BACOVA_02049 0.69 -2.1 355,974 - BACOVA_02049 0.69 +1.1 355,976 - BACOVA_02049 0.69 -0.7 355,976 - BACOVA_02049 0.69 +0.1 355,993 + BACOVA_02049 0.71 -1.3 355,997 + BACOVA_02049 0.71 +0.0 355,998 - BACOVA_02049 0.71 +1.4 355,998 - BACOVA_02049 0.71 -1.0 356,018 + BACOVA_02049 0.73 -0.9 356,018 + BACOVA_02049 0.73 -1.3 356,019 - BACOVA_02049 0.73 -2.2 356,020 + BACOVA_02049 0.73 -0.9 356,021 - BACOVA_02049 0.73 -0.9 356,023 + BACOVA_02049 0.74 -0.8 356,024 - BACOVA_02049 0.74 -1.3 356,026 - BACOVA_02049 0.74 +0.1 356,026 - BACOVA_02049 0.74 -0.6 356,026 - BACOVA_02049 0.74 -0.4 356,108 - BACOVA_02049 0.81 -1.2 356,126 - BACOVA_02049 0.83 -1.9 356,164 + BACOVA_02049 0.86 +0.4 356,193 - BACOVA_02049 0.89 -0.4 356,343 - -0.7 356,343 - +0.1 356,347 - +0.8 356,347 - +1.1 356,356 + -1.2 356,356 + -0.1 356,357 - +0.2 356,382 - -1.3 356,391 + +0.3 356,398 - -1.9 356,494 - BACOVA_02050 0.15 -0.1 356,504 + BACOVA_02050 0.16 -0.3 356,540 + BACOVA_02050 0.20 -0.9 356,544 + BACOVA_02050 0.20 -2.1 356,544 + BACOVA_02050 0.20 +0.6 356,544 + BACOVA_02050 0.20 -0.6 356,610 + BACOVA_02050 0.27 -0.8 356,610 + BACOVA_02050 0.27 -1.2 356,611 - BACOVA_02050 0.28 -1.2 356,614 + BACOVA_02050 0.28 -0.1 356,614 + BACOVA_02050 0.28 -0.9 356,619 - BACOVA_02050 0.28 -1.1 356,625 + BACOVA_02050 0.29 -0.4 356,649 - BACOVA_02050 0.32 -0.3 356,721 + BACOVA_02050 0.40 -0.4 356,721 + BACOVA_02050 0.40 -0.9 356,721 + BACOVA_02050 0.40 +0.8 356,775 + BACOVA_02050 0.45 +2.4 356,809 + BACOVA_02050 0.49 -2.2 356,809 + BACOVA_02050 0.49 +1.5 356,810 - BACOVA_02050 0.49 -0.6 356,810 - BACOVA_02050 0.49 -0.5 356,842 - BACOVA_02050 0.53 -1.1 356,849 + BACOVA_02050 0.54 +0.4 356,850 - BACOVA_02050 0.54 -0.9 356,852 + BACOVA_02050 0.54 +0.5 356,917 - BACOVA_02050 0.61 +0.5 356,996 - BACOVA_02050 0.70 +1.2 356,997 + BACOVA_02050 0.70 -2.9 357,015 - BACOVA_02050 0.72 -0.4 357,030 + BACOVA_02050 0.73 -0.2 357,031 - BACOVA_02050 0.73 -0.0 357,075 + BACOVA_02050 0.78 +1.5 357,098 + BACOVA_02050 0.81 -3.1 357,098 + BACOVA_02050 0.81 -3.2 357,129 + BACOVA_02050 0.84 -1.1 357,129 + BACOVA_02050 0.84 +0.3 357,130 - BACOVA_02050 0.84 -0.0 357,152 + BACOVA_02050 0.87 -2.5 357,152 + BACOVA_02050 0.87 +0.5 357,189 + -0.9 357,190 - +0.1 357,191 + -0.6 357,202 - +0.7 357,202 - +0.1 357,243 - -0.6 357,246 + -0.6 357,247 - +0.1 357,247 - +0.7 357,249 - -2.6 357,266 + +0.6 357,267 - +0.6 357,272 - +0.4 357,281 + -1.0 357,282 - -0.8 357,282 - -0.4 357,332 + +1.2 357,332 + -0.7 357,341 - -0.1 357,341 - +0.5 357,371 + +1.3 357,372 - -1.1 357,395 + -1.4 357,395 + +0.3 357,467 + +0.8 357,467 + -0.7 357,468 - +0.2 357,468 - -0.8 357,468 - -1.3 357,517 + -0.9 357,518 - -0.4 357,518 - +0.8 357,524 + -0.2 357,527 - -0.3 357,527 - +0.9 357,527 - +0.7 357,531 + +0.1 357,531 + -1.8 357,531 + +1.4 357,532 - -0.1 357,532 - +0.8 357,532 - +0.2 357,536 - +0.7 357,540 + +0.1 357,583 + +0.3 357,583 + +0.3 357,586 + +0.2 357,625 + +2.1 357,723 - BACOVA_02051 0.13 +1.5 357,754 + BACOVA_02051 0.14 -0.6 357,761 + BACOVA_02051 0.14 +1.4 357,795 + BACOVA_02051 0.15 +0.9 357,802 + BACOVA_02051 0.15 +1.8 357,805 + BACOVA_02051 0.16 -2.0 357,847 + BACOVA_02051 0.17 -1.5 357,851 + BACOVA_02051 0.17 +0.6 357,888 - BACOVA_02051 0.18 -1.2 357,944 + BACOVA_02051 0.20 -0.6 357,944 + BACOVA_02051 0.20 -0.2 357,945 - BACOVA_02051 0.20 -0.5 357,949 - BACOVA_02051 0.21 -0.4 357,989 + BACOVA_02051 0.22 +1.0 358,024 - BACOVA_02051 0.23 +1.4 358,086 + BACOVA_02051 0.25 -1.7 358,097 + BACOVA_02051 0.26 -0.5 358,098 - BACOVA_02051 0.26 -1.9 358,175 + BACOVA_02051 0.28 -0.2 358,203 - BACOVA_02051 0.29 +0.2
Or see this region's nucleotide sequence