Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01972

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01971 and BACOVA_01972 are separated by 39 nucleotidesBACOVA_01972 and BACOVA_01973 are separated by 3 nucleotides BACOVA_01971: BACOVA_01971 - glycosyl hydrolase family 2, sugar binding domain protein, at 187,866 to 189,674 _01971 BACOVA_01972: BACOVA_01972 - Ser/Thr phosphatase family protein, at 189,714 to 190,790 _01972 BACOVA_01973: BACOVA_01973 - glycosyl hydrolase, family 43, at 190,794 to 191,918 _01973 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 188.716 kb on - strand, within BACOVA_01971at 188.722 kb on - strand, within BACOVA_01971at 188.768 kb on + strand, within BACOVA_01971at 188.771 kb on - strand, within BACOVA_01971at 188.777 kb on + strand, within BACOVA_01971at 188.783 kb on + strand, within BACOVA_01971at 188.795 kb on + strand, within BACOVA_01971at 188.829 kb on + strand, within BACOVA_01971at 188.873 kb on + strand, within BACOVA_01971at 188.898 kb on + strand, within BACOVA_01971at 188.899 kb on - strand, within BACOVA_01971at 188.935 kb on - strand, within BACOVA_01971at 188.955 kb on - strand, within BACOVA_01971at 188.988 kb on + strand, within BACOVA_01971at 188.989 kb on - strand, within BACOVA_01971at 188.989 kb on - strand, within BACOVA_01971at 189.011 kb on + strand, within BACOVA_01971at 189.011 kb on + strand, within BACOVA_01971at 189.080 kb on + strand, within BACOVA_01971at 189.096 kb on - strand, within BACOVA_01971at 189.096 kb on - strand, within BACOVA_01971at 189.097 kb on + strand, within BACOVA_01971at 189.098 kb on - strand, within BACOVA_01971at 189.117 kb on - strand, within BACOVA_01971at 189.120 kb on - strand, within BACOVA_01971at 189.230 kb on + strand, within BACOVA_01971at 189.230 kb on + strand, within BACOVA_01971at 189.242 kb on + strand, within BACOVA_01971at 189.242 kb on + strand, within BACOVA_01971at 189.242 kb on + strand, within BACOVA_01971at 189.242 kb on + strand, within BACOVA_01971at 189.243 kb on - strand, within BACOVA_01971at 189.258 kb on + strand, within BACOVA_01971at 189.309 kb on + strand, within BACOVA_01971at 189.309 kb on + strand, within BACOVA_01971at 189.309 kb on + strand, within BACOVA_01971at 189.414 kb on + strand, within BACOVA_01971at 189.415 kb on - strand, within BACOVA_01971at 189.445 kb on + strand, within BACOVA_01971at 189.446 kb on - strand, within BACOVA_01971at 189.479 kb on + strand, within BACOVA_01971at 189.484 kb on + strand, within BACOVA_01971at 189.485 kb on - strand, within BACOVA_01971at 189.508 kb on - strandat 189.528 kb on - strandat 189.568 kb on - strandat 189.581 kb on - strandat 189.636 kb on - strandat 189.638 kb on + strandat 189.641 kb on + strandat 189.641 kb on + strandat 189.642 kb on - strandat 189.646 kb on - strandat 189.676 kb on + strandat 189.676 kb on + strandat 189.677 kb on - strandat 189.681 kb on + strandat 189.706 kb on - strandat 189.728 kb on + strandat 189.743 kb on - strandat 189.802 kb on + strandat 189.803 kb on - strandat 189.807 kb on - strandat 189.811 kb on - strandat 189.811 kb on - strandat 189.811 kb on - strandat 189.836 kb on + strand, within BACOVA_01972at 189.836 kb on + strand, within BACOVA_01972at 189.837 kb on - strand, within BACOVA_01972at 189.891 kb on + strand, within BACOVA_01972at 189.891 kb on + strand, within BACOVA_01972at 189.895 kb on + strand, within BACOVA_01972at 189.895 kb on + strand, within BACOVA_01972at 189.895 kb on + strand, within BACOVA_01972at 189.896 kb on - strand, within BACOVA_01972at 189.900 kb on + strand, within BACOVA_01972at 189.944 kb on + strand, within BACOVA_01972at 189.945 kb on - strand, within BACOVA_01972at 189.965 kb on + strand, within BACOVA_01972at 190.033 kb on + strand, within BACOVA_01972at 190.033 kb on + strand, within BACOVA_01972at 190.037 kb on + strand, within BACOVA_01972at 190.083 kb on - strand, within BACOVA_01972at 190.098 kb on - strand, within BACOVA_01972at 190.109 kb on + strand, within BACOVA_01972at 190.113 kb on + strand, within BACOVA_01972at 190.114 kb on - strand, within BACOVA_01972at 190.123 kb on + strand, within BACOVA_01972at 190.149 kb on - strand, within BACOVA_01972at 190.221 kb on + strand, within BACOVA_01972at 190.227 kb on + strand, within BACOVA_01972at 190.227 kb on + strand, within BACOVA_01972at 190.228 kb on - strand, within BACOVA_01972at 190.305 kb on - strand, within BACOVA_01972at 190.358 kb on + strand, within BACOVA_01972at 190.359 kb on - strand, within BACOVA_01972at 190.359 kb on - strand, within BACOVA_01972at 190.400 kb on - strand, within BACOVA_01972at 190.400 kb on - strand, within BACOVA_01972at 190.405 kb on + strand, within BACOVA_01972at 190.427 kb on + strand, within BACOVA_01972at 190.428 kb on - strand, within BACOVA_01972at 190.430 kb on + strand, within BACOVA_01972at 190.431 kb on - strand, within BACOVA_01972at 190.432 kb on + strand, within BACOVA_01972at 190.432 kb on + strand, within BACOVA_01972at 190.438 kb on - strand, within BACOVA_01972at 190.445 kb on + strand, within BACOVA_01972at 190.521 kb on + strand, within BACOVA_01972at 190.521 kb on + strand, within BACOVA_01972at 190.526 kb on + strand, within BACOVA_01972at 190.587 kb on + strand, within BACOVA_01972at 190.587 kb on + strand, within BACOVA_01972at 190.637 kb on + strand, within BACOVA_01972at 190.642 kb on + strand, within BACOVA_01972at 190.643 kb on - strand, within BACOVA_01972at 190.649 kb on + strand, within BACOVA_01972at 190.649 kb on + strand, within BACOVA_01972at 190.649 kb on + strand, within BACOVA_01972at 190.649 kb on + strand, within BACOVA_01972at 190.775 kb on - strandat 190.796 kb on - strandat 190.859 kb on + strandat 190.860 kb on - strandat 190.863 kb on - strandat 190.864 kb on + strandat 190.891 kb on - strandat 190.919 kb on + strand, within BACOVA_01973at 190.919 kb on + strand, within BACOVA_01973at 190.920 kb on - strand, within BACOVA_01973at 190.920 kb on - strand, within BACOVA_01973at 190.949 kb on - strand, within BACOVA_01973at 190.949 kb on - strand, within BACOVA_01973at 190.949 kb on - strand, within BACOVA_01973at 191.028 kb on + strand, within BACOVA_01973at 191.029 kb on - strand, within BACOVA_01973at 191.034 kb on + strand, within BACOVA_01973at 191.042 kb on + strand, within BACOVA_01973at 191.048 kb on + strand, within BACOVA_01973at 191.086 kb on + strand, within BACOVA_01973at 191.087 kb on - strand, within BACOVA_01973at 191.162 kb on + strand, within BACOVA_01973at 191.176 kb on + strand, within BACOVA_01973at 191.177 kb on - strand, within BACOVA_01973at 191.177 kb on - strand, within BACOVA_01973at 191.275 kb on - strand, within BACOVA_01973at 191.280 kb on + strand, within BACOVA_01973at 191.284 kb on + strand, within BACOVA_01973at 191.285 kb on - strand, within BACOVA_01973at 191.309 kb on + strand, within BACOVA_01973at 191.310 kb on - strand, within BACOVA_01973at 191.310 kb on - strand, within BACOVA_01973at 191.310 kb on - strand, within BACOVA_01973at 191.315 kb on + strand, within BACOVA_01973at 191.315 kb on + strand, within BACOVA_01973at 191.319 kb on - strand, within BACOVA_01973at 191.319 kb on - strand, within BACOVA_01973at 191.321 kb on + strand, within BACOVA_01973at 191.321 kb on + strand, within BACOVA_01973at 191.322 kb on - strand, within BACOVA_01973at 191.323 kb on + strand, within BACOVA_01973at 191.323 kb on + strand, within BACOVA_01973at 191.366 kb on - strand, within BACOVA_01973at 191.366 kb on - strand, within BACOVA_01973at 191.387 kb on + strand, within BACOVA_01973at 191.388 kb on - strand, within BACOVA_01973at 191.466 kb on - strand, within BACOVA_01973at 191.472 kb on - strand, within BACOVA_01973at 191.472 kb on - strand, within BACOVA_01973at 191.504 kb on - strand, within BACOVA_01973at 191.504 kb on - strand, within BACOVA_01973at 191.504 kb on - strand, within BACOVA_01973at 191.506 kb on + strand, within BACOVA_01973at 191.506 kb on + strand, within BACOVA_01973at 191.507 kb on - strand, within BACOVA_01973at 191.507 kb on - strand, within BACOVA_01973at 191.507 kb on - strand, within BACOVA_01973at 191.507 kb on - strand, within BACOVA_01973at 191.515 kb on + strand, within BACOVA_01973at 191.516 kb on - strand, within BACOVA_01973at 191.516 kb on - strand, within BACOVA_01973at 191.530 kb on + strand, within BACOVA_01973at 191.534 kb on + strand, within BACOVA_01973at 191.602 kb on + strand, within BACOVA_01973at 191.602 kb on + strand, within BACOVA_01973at 191.624 kb on + strand, within BACOVA_01973at 191.625 kb on - strand, within BACOVA_01973at 191.645 kb on - strand, within BACOVA_01973at 191.648 kb on + strand, within BACOVA_01973at 191.649 kb on - strand, within BACOVA_01973at 191.649 kb on - strand, within BACOVA_01973at 191.649 kb on - strand, within BACOVA_01973at 191.650 kb on + strand, within BACOVA_01973at 191.669 kb on - strand, within BACOVA_01973at 191.669 kb on - strand, within BACOVA_01973at 191.669 kb on - strand, within BACOVA_01973at 191.701 kb on - strand, within BACOVA_01973at 191.732 kb on + strand, within BACOVA_01973at 191.733 kb on - strand, within BACOVA_01973at 191.733 kb on - strand, within BACOVA_01973at 191.756 kb on + strand, within BACOVA_01973

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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188,716 - BACOVA_01971 0.47 +1.3
188,722 - BACOVA_01971 0.47 -0.3
188,768 + BACOVA_01971 0.50 -0.5
188,771 - BACOVA_01971 0.50 -0.5
188,777 + BACOVA_01971 0.50 +0.7
188,783 + BACOVA_01971 0.51 -0.3
188,795 + BACOVA_01971 0.51 -0.4
188,829 + BACOVA_01971 0.53 +1.1
188,873 + BACOVA_01971 0.56 +0.1
188,898 + BACOVA_01971 0.57 -0.6
188,899 - BACOVA_01971 0.57 +0.6
188,935 - BACOVA_01971 0.59 -0.9
188,955 - BACOVA_01971 0.60 -0.8
188,988 + BACOVA_01971 0.62 -0.5
188,989 - BACOVA_01971 0.62 -2.2
188,989 - BACOVA_01971 0.62 -2.0
189,011 + BACOVA_01971 0.63 -2.1
189,011 + BACOVA_01971 0.63 +2.5
189,080 + BACOVA_01971 0.67 -0.2
189,096 - BACOVA_01971 0.68 +0.4
189,096 - BACOVA_01971 0.68 -1.0
189,097 + BACOVA_01971 0.68 -0.3
189,098 - BACOVA_01971 0.68 +2.0
189,117 - BACOVA_01971 0.69 +0.0
189,120 - BACOVA_01971 0.69 +0.4
189,230 + BACOVA_01971 0.75 +0.8
189,230 + BACOVA_01971 0.75 +1.3
189,242 + BACOVA_01971 0.76 -0.4
189,242 + BACOVA_01971 0.76 -0.3
189,242 + BACOVA_01971 0.76 +0.0
189,242 + BACOVA_01971 0.76 +0.7
189,243 - BACOVA_01971 0.76 -1.3
189,258 + BACOVA_01971 0.77 -1.0
189,309 + BACOVA_01971 0.80 +0.3
189,309 + BACOVA_01971 0.80 +1.1
189,309 + BACOVA_01971 0.80 +0.7
189,414 + BACOVA_01971 0.86 -0.2
189,415 - BACOVA_01971 0.86 +0.1
189,445 + BACOVA_01971 0.87 -0.3
189,446 - BACOVA_01971 0.87 +1.5
189,479 + BACOVA_01971 0.89 -0.0
189,484 + BACOVA_01971 0.89 +0.9
189,485 - BACOVA_01971 0.89 +0.8
189,508 - -0.7
189,528 - -0.3
189,568 - +0.4
189,581 - -1.6
189,636 - -1.5
189,638 + -1.5
189,641 + -0.3
189,641 + -0.1
189,642 - +0.3
189,646 - +0.1
189,676 + +1.0
189,676 + +0.5
189,677 - -2.2
189,681 + +0.1
189,706 - -0.5
189,728 + -1.0
189,743 - +2.5
189,802 + +0.5
189,803 - -0.4
189,807 - -0.8
189,811 - +0.7
189,811 - -1.3
189,811 - +0.6
189,836 + BACOVA_01972 0.11 +2.3
189,836 + BACOVA_01972 0.11 -0.5
189,837 - BACOVA_01972 0.11 -0.1
189,891 + BACOVA_01972 0.16 +0.0
189,891 + BACOVA_01972 0.16 -1.0
189,895 + BACOVA_01972 0.17 +0.5
189,895 + BACOVA_01972 0.17 +0.3
189,895 + BACOVA_01972 0.17 -1.1
189,896 - BACOVA_01972 0.17 -0.9
189,900 + BACOVA_01972 0.17 -0.3
189,944 + BACOVA_01972 0.21 +0.5
189,945 - BACOVA_01972 0.21 -1.0
189,965 + BACOVA_01972 0.23 -0.2
190,033 + BACOVA_01972 0.30 -0.7
190,033 + BACOVA_01972 0.30 +1.9
190,037 + BACOVA_01972 0.30 -0.9
190,083 - BACOVA_01972 0.34 -0.1
190,098 - BACOVA_01972 0.36 -1.9
190,109 + BACOVA_01972 0.37 +0.2
190,113 + BACOVA_01972 0.37 +0.9
190,114 - BACOVA_01972 0.37 +1.0
190,123 + BACOVA_01972 0.38 +1.7
190,149 - BACOVA_01972 0.40 +0.5
190,221 + BACOVA_01972 0.47 -0.3
190,227 + BACOVA_01972 0.48 -0.3
190,227 + BACOVA_01972 0.48 -0.7
190,228 - BACOVA_01972 0.48 +0.4
190,305 - BACOVA_01972 0.55 -0.9
190,358 + BACOVA_01972 0.60 -0.7
190,359 - BACOVA_01972 0.60 +1.0
190,359 - BACOVA_01972 0.60 -0.2
190,400 - BACOVA_01972 0.64 +0.8
190,400 - BACOVA_01972 0.64 +0.7
190,405 + BACOVA_01972 0.64 +0.9
190,427 + BACOVA_01972 0.66 -1.7
190,428 - BACOVA_01972 0.66 +0.1
190,430 + BACOVA_01972 0.66 +0.3
190,431 - BACOVA_01972 0.67 +0.7
190,432 + BACOVA_01972 0.67 +0.1
190,432 + BACOVA_01972 0.67 +0.6
190,438 - BACOVA_01972 0.67 -0.7
190,445 + BACOVA_01972 0.68 +0.0
190,521 + BACOVA_01972 0.75 -2.4
190,521 + BACOVA_01972 0.75 -0.6
190,526 + BACOVA_01972 0.75 -0.6
190,587 + BACOVA_01972 0.81 -3.2
190,587 + BACOVA_01972 0.81 +0.5
190,637 + BACOVA_01972 0.86 -0.5
190,642 + BACOVA_01972 0.86 -0.8
190,643 - BACOVA_01972 0.86 +0.2
190,649 + BACOVA_01972 0.87 -0.2
190,649 + BACOVA_01972 0.87 -1.0
190,649 + BACOVA_01972 0.87 -1.2
190,649 + BACOVA_01972 0.87 -0.2
190,775 - +0.6
190,796 - +0.8
190,859 + -0.7
190,860 - +1.5
190,863 - -0.5
190,864 + +0.1
190,891 - -0.4
190,919 + BACOVA_01973 0.11 -1.7
190,919 + BACOVA_01973 0.11 +1.1
190,920 - BACOVA_01973 0.11 -1.3
190,920 - BACOVA_01973 0.11 +1.0
190,949 - BACOVA_01973 0.14 -0.5
190,949 - BACOVA_01973 0.14 +0.2
190,949 - BACOVA_01973 0.14 -0.3
191,028 + BACOVA_01973 0.21 +0.1
191,029 - BACOVA_01973 0.21 +0.3
191,034 + BACOVA_01973 0.21 -1.3
191,042 + BACOVA_01973 0.22 +0.6
191,048 + BACOVA_01973 0.23 -1.0
191,086 + BACOVA_01973 0.26 +0.1
191,087 - BACOVA_01973 0.26 -0.7
191,162 + BACOVA_01973 0.33 +1.5
191,176 + BACOVA_01973 0.34 +0.7
191,177 - BACOVA_01973 0.34 -0.2
191,177 - BACOVA_01973 0.34 +0.1
191,275 - BACOVA_01973 0.43 -1.5
191,280 + BACOVA_01973 0.43 +0.0
191,284 + BACOVA_01973 0.44 +0.7
191,285 - BACOVA_01973 0.44 -0.9
191,309 + BACOVA_01973 0.46 -1.1
191,310 - BACOVA_01973 0.46 +0.5
191,310 - BACOVA_01973 0.46 -0.2
191,310 - BACOVA_01973 0.46 -2.5
191,315 + BACOVA_01973 0.46 +1.7
191,315 + BACOVA_01973 0.46 +1.4
191,319 - BACOVA_01973 0.47 +1.2
191,319 - BACOVA_01973 0.47 -0.4
191,321 + BACOVA_01973 0.47 +0.4
191,321 + BACOVA_01973 0.47 +1.0
191,322 - BACOVA_01973 0.47 -0.4
191,323 + BACOVA_01973 0.47 +0.4
191,323 + BACOVA_01973 0.47 +0.0
191,366 - BACOVA_01973 0.51 +1.6
191,366 - BACOVA_01973 0.51 +0.8
191,387 + BACOVA_01973 0.53 -0.6
191,388 - BACOVA_01973 0.53 -0.8
191,466 - BACOVA_01973 0.60 +0.9
191,472 - BACOVA_01973 0.60 +1.1
191,472 - BACOVA_01973 0.60 +0.5
191,504 - BACOVA_01973 0.63 -0.1
191,504 - BACOVA_01973 0.63 -1.8
191,504 - BACOVA_01973 0.63 -1.1
191,506 + BACOVA_01973 0.63 +1.0
191,506 + BACOVA_01973 0.63 +0.5
191,507 - BACOVA_01973 0.63 +0.2
191,507 - BACOVA_01973 0.63 +0.1
191,507 - BACOVA_01973 0.63 +0.9
191,507 - BACOVA_01973 0.63 -0.8
191,515 + BACOVA_01973 0.64 +0.4
191,516 - BACOVA_01973 0.64 -0.2
191,516 - BACOVA_01973 0.64 +0.3
191,530 + BACOVA_01973 0.65 +0.3
191,534 + BACOVA_01973 0.66 -0.8
191,602 + BACOVA_01973 0.72 +0.2
191,602 + BACOVA_01973 0.72 -0.2
191,624 + BACOVA_01973 0.74 -0.7
191,625 - BACOVA_01973 0.74 -0.1
191,645 - BACOVA_01973 0.76 +2.1
191,648 + BACOVA_01973 0.76 +1.3
191,649 - BACOVA_01973 0.76 -1.2
191,649 - BACOVA_01973 0.76 +0.1
191,649 - BACOVA_01973 0.76 -0.3
191,650 + BACOVA_01973 0.76 +1.6
191,669 - BACOVA_01973 0.78 -0.5
191,669 - BACOVA_01973 0.78 +0.9
191,669 - BACOVA_01973 0.78 +0.9
191,701 - BACOVA_01973 0.81 -0.8
191,732 + BACOVA_01973 0.83 -0.5
191,733 - BACOVA_01973 0.83 -0.6
191,733 - BACOVA_01973 0.83 +1.5
191,756 + BACOVA_01973 0.86 +0.1

Or see this region's nucleotide sequence