Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01959

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01958 and BACOVA_01959 are separated by 137 nucleotidesBACOVA_01959 and BACOVA_01960 are separated by 180 nucleotides BACOVA_01958: BACOVA_01958 - phosphofructokinase, at 166,898 to 167,908 _01958 BACOVA_01959: BACOVA_01959 - GH3 auxin-responsive promoter, at 168,046 to 169,572 _01959 BACOVA_01960: BACOVA_01960 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 169,753 to 170,889 _01960 Position (kb) 168 169 170Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 167.104 kb on + strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.126 kb on - strand, within BACOVA_01958at 167.128 kb on - strand, within BACOVA_01958at 167.154 kb on - strand, within BACOVA_01958at 167.166 kb on + strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.238 kb on - strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.242 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.302 kb on + strand, within BACOVA_01958at 167.303 kb on - strand, within BACOVA_01958at 167.304 kb on + strand, within BACOVA_01958at 167.378 kb on - strand, within BACOVA_01958at 167.453 kb on - strand, within BACOVA_01958at 167.458 kb on + strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.459 kb on - strand, within BACOVA_01958at 167.503 kb on + strand, within BACOVA_01958at 167.504 kb on + strand, within BACOVA_01958at 167.521 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.531 kb on + strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.532 kb on - strand, within BACOVA_01958at 167.539 kb on + strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.540 kb on - strand, within BACOVA_01958at 167.640 kb on - strand, within BACOVA_01958at 167.705 kb on + strand, within BACOVA_01958at 167.706 kb on - strand, within BACOVA_01958at 167.753 kb on - strand, within BACOVA_01958at 167.755 kb on + strand, within BACOVA_01958at 167.756 kb on - strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.804 kb on + strand, within BACOVA_01958at 167.805 kb on - strand, within BACOVA_01958at 167.823 kb on + strandat 167.892 kb on - strandat 167.941 kb on - strandat 168.002 kb on + strandat 168.007 kb on + strandat 168.031 kb on + strandat 168.032 kb on - strandat 168.098 kb on + strandat 168.104 kb on + strandat 168.104 kb on + strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.105 kb on - strandat 168.106 kb on + strandat 168.107 kb on - strandat 168.111 kb on + strandat 168.128 kb on + strandat 168.128 kb on + strandat 168.128 kb on + strandat 168.129 kb on - strandat 168.269 kb on - strand, within BACOVA_01959at 168.269 kb on - strand, within BACOVA_01959at 168.272 kb on + strand, within BACOVA_01959at 168.273 kb on - strand, within BACOVA_01959at 168.320 kb on + strand, within BACOVA_01959at 168.351 kb on + strand, within BACOVA_01959at 168.358 kb on - strand, within BACOVA_01959at 168.406 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.530 kb on + strand, within BACOVA_01959at 168.533 kb on + strand, within BACOVA_01959at 168.549 kb on + strand, within BACOVA_01959at 168.710 kb on + strand, within BACOVA_01959at 168.761 kb on + strand, within BACOVA_01959at 168.762 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.824 kb on - strand, within BACOVA_01959at 168.833 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.856 kb on + strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.857 kb on - strand, within BACOVA_01959at 168.861 kb on - strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.868 kb on + strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.869 kb on - strand, within BACOVA_01959at 168.926 kb on + strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.927 kb on - strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 168.929 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.000 kb on + strand, within BACOVA_01959at 169.033 kb on + strand, within BACOVA_01959at 169.034 kb on - strand, within BACOVA_01959at 169.044 kb on + strand, within BACOVA_01959at 169.064 kb on + strand, within BACOVA_01959at 169.065 kb on - strand, within BACOVA_01959at 169.117 kb on - strand, within BACOVA_01959at 169.260 kb on + strand, within BACOVA_01959at 169.298 kb on + strand, within BACOVA_01959at 169.343 kb on + strand, within BACOVA_01959at 169.403 kb on + strand, within BACOVA_01959at 169.404 kb on - strand, within BACOVA_01959at 169.425 kb on - strandat 169.445 kb on + strandat 169.512 kb on + strandat 169.513 kb on - strandat 169.522 kb on + strandat 169.524 kb on + strandat 169.525 kb on - strandat 169.525 kb on - strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.526 kb on + strandat 169.527 kb on - strandat 169.588 kb on + strandat 169.598 kb on + strandat 169.612 kb on - strandat 169.620 kb on + strandat 169.621 kb on - strandat 169.626 kb on + strandat 169.685 kb on + strandat 169.685 kb on + strandat 169.700 kb on + strandat 169.726 kb on - strandat 169.726 kb on - strandat 169.741 kb on + strandat 169.742 kb on - strandat 169.750 kb on + strandat 169.769 kb on - strandat 169.790 kb on - strandat 169.803 kb on - strandat 169.803 kb on - strandat 169.864 kb on + strandat 169.885 kb on - strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.890 kb on + strand, within BACOVA_01960at 169.950 kb on + strand, within BACOVA_01960at 170.021 kb on - strand, within BACOVA_01960at 170.023 kb on + strand, within BACOVA_01960at 170.026 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.109 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.199 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.320 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.322 kb on + strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.323 kb on - strand, within BACOVA_01960at 170.391 kb on + strand, within BACOVA_01960at 170.483 kb on + strand, within BACOVA_01960at 170.484 kb on - strand, within BACOVA_01960at 170.492 kb on + strand, within BACOVA_01960at 170.507 kb on - strand, within BACOVA_01960at 170.544 kb on - strand, within BACOVA_01960

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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167,104 + BACOVA_01958 0.20 +0.7
167,126 - BACOVA_01958 0.23 +1.4
167,126 - BACOVA_01958 0.23 +1.5
167,128 - BACOVA_01958 0.23 -0.0
167,154 - BACOVA_01958 0.25 -0.5
167,166 + BACOVA_01958 0.27 +0.2
167,238 - BACOVA_01958 0.34 -0.3
167,238 - BACOVA_01958 0.34 +1.0
167,238 - BACOVA_01958 0.34 -0.5
167,242 + BACOVA_01958 0.34 +0.3
167,242 + BACOVA_01958 0.34 -1.0
167,302 + BACOVA_01958 0.40 -1.5
167,302 + BACOVA_01958 0.40 +0.6
167,303 - BACOVA_01958 0.40 -0.7
167,304 + BACOVA_01958 0.40 +0.4
167,378 - BACOVA_01958 0.47 +0.5
167,453 - BACOVA_01958 0.55 +0.2
167,458 + BACOVA_01958 0.55 -1.1
167,459 - BACOVA_01958 0.55 -0.7
167,459 - BACOVA_01958 0.55 -1.1
167,503 + BACOVA_01958 0.60 +1.0
167,504 + BACOVA_01958 0.60 -1.1
167,521 + BACOVA_01958 0.62 +0.1
167,531 + BACOVA_01958 0.63 -3.0
167,531 + BACOVA_01958 0.63 +0.6
167,532 - BACOVA_01958 0.63 +1.5
167,532 - BACOVA_01958 0.63 -0.0
167,539 + BACOVA_01958 0.63 -2.7
167,540 - BACOVA_01958 0.64 +0.9
167,540 - BACOVA_01958 0.64 -0.2
167,640 - BACOVA_01958 0.73 -0.1
167,705 + BACOVA_01958 0.80 +0.0
167,706 - BACOVA_01958 0.80 -0.3
167,753 - BACOVA_01958 0.85 -0.5
167,755 + BACOVA_01958 0.85 -1.2
167,756 - BACOVA_01958 0.85 -0.5
167,804 + BACOVA_01958 0.90 +1.8
167,804 + BACOVA_01958 0.90 -0.2
167,805 - BACOVA_01958 0.90 -1.1
167,823 + -0.1
167,892 - +0.5
167,941 - -0.9
168,002 + -0.1
168,007 + -0.1
168,031 + +0.1
168,032 - -3.2
168,098 + -4.1
168,104 + -5.2
168,104 + -1.9
168,105 - -3.5
168,105 - -3.4
168,105 - -4.0
168,105 - -1.2
168,105 - -4.1
168,106 + -3.4
168,107 - -1.9
168,111 + -4.4
168,128 + -1.7
168,128 + -2.5
168,128 + -2.1
168,129 - -2.3
168,269 - BACOVA_01959 0.15 -3.6
168,269 - BACOVA_01959 0.15 -2.6
168,272 + BACOVA_01959 0.15 -2.5
168,273 - BACOVA_01959 0.15 -3.0
168,320 + BACOVA_01959 0.18 -1.2
168,351 + BACOVA_01959 0.20 -2.0
168,358 - BACOVA_01959 0.20 -1.6
168,406 + BACOVA_01959 0.24 -2.9
168,530 + BACOVA_01959 0.32 -3.5
168,530 + BACOVA_01959 0.32 -4.5
168,530 + BACOVA_01959 0.32 -4.2
168,533 + BACOVA_01959 0.32 -4.5
168,549 + BACOVA_01959 0.33 -3.3
168,710 + BACOVA_01959 0.43 -3.7
168,761 + BACOVA_01959 0.47 -3.3
168,762 - BACOVA_01959 0.47 -2.6
168,824 - BACOVA_01959 0.51 -2.4
168,824 - BACOVA_01959 0.51 -4.3
168,833 + BACOVA_01959 0.52 -5.1
168,856 + BACOVA_01959 0.53 -4.0
168,856 + BACOVA_01959 0.53 -3.2
168,857 - BACOVA_01959 0.53 -4.0
168,857 - BACOVA_01959 0.53 -2.6
168,861 - BACOVA_01959 0.53 -2.1
168,868 + BACOVA_01959 0.54 -2.0
168,868 + BACOVA_01959 0.54 -1.4
168,868 + BACOVA_01959 0.54 -4.8
168,868 + BACOVA_01959 0.54 -4.7
168,869 - BACOVA_01959 0.54 -1.1
168,869 - BACOVA_01959 0.54 -3.8
168,869 - BACOVA_01959 0.54 -0.5
168,926 + BACOVA_01959 0.58 -1.6
168,927 - BACOVA_01959 0.58 -4.0
168,927 - BACOVA_01959 0.58 -3.8
168,927 - BACOVA_01959 0.58 -3.5
168,929 + BACOVA_01959 0.58 -4.1
168,929 + BACOVA_01959 0.58 -4.6
169,000 + BACOVA_01959 0.62 -4.8
169,000 + BACOVA_01959 0.62 -3.1
169,033 + BACOVA_01959 0.65 -2.2
169,034 - BACOVA_01959 0.65 -5.1
169,044 + BACOVA_01959 0.65 -4.8
169,064 + BACOVA_01959 0.67 -3.3
169,065 - BACOVA_01959 0.67 -1.4
169,117 - BACOVA_01959 0.70 -2.8
169,260 + BACOVA_01959 0.80 -2.2
169,298 + BACOVA_01959 0.82 -1.2
169,343 + BACOVA_01959 0.85 -2.9
169,403 + BACOVA_01959 0.89 -3.3
169,404 - BACOVA_01959 0.89 -2.2
169,425 - -2.2
169,445 + -2.5
169,512 + -1.6
169,513 - -1.7
169,522 + -2.1
169,524 + -0.5
169,525 - -4.0
169,525 - -2.8
169,526 + -4.2
169,526 + -3.3
169,526 + -1.3
169,527 - -0.5
169,588 + -0.5
169,598 + +0.1
169,612 - -1.1
169,620 + +0.5
169,621 - -0.6
169,626 + -1.0
169,685 + +0.4
169,685 + -0.9
169,700 + +0.3
169,726 - -0.8
169,726 - +0.3
169,741 + -0.2
169,742 - +0.3
169,750 + +0.2
169,769 - +0.2
169,790 - +0.1
169,803 - -0.1
169,803 - -0.5
169,864 + -0.4
169,885 - BACOVA_01960 0.12 +0.7
169,890 + BACOVA_01960 0.12 -0.6
169,890 + BACOVA_01960 0.12 -0.3
169,950 + BACOVA_01960 0.17 +1.1
170,021 - BACOVA_01960 0.24 +0.5
170,023 + BACOVA_01960 0.24 -0.5
170,026 + BACOVA_01960 0.24 +0.8
170,109 + BACOVA_01960 0.31 -0.6
170,109 + BACOVA_01960 0.31 -0.1
170,109 + BACOVA_01960 0.31 -1.6
170,199 + BACOVA_01960 0.39 +0.5
170,199 + BACOVA_01960 0.39 -0.5
170,320 + BACOVA_01960 0.50 -1.1
170,320 + BACOVA_01960 0.50 +1.1
170,322 + BACOVA_01960 0.50 -0.1
170,322 + BACOVA_01960 0.50 +0.1
170,323 - BACOVA_01960 0.50 +0.6
170,323 - BACOVA_01960 0.50 -1.5
170,323 - BACOVA_01960 0.50 -0.4
170,391 + BACOVA_01960 0.56 -0.3
170,483 + BACOVA_01960 0.64 -1.3
170,484 - BACOVA_01960 0.64 -0.3
170,492 + BACOVA_01960 0.65 +0.0
170,507 - BACOVA_01960 0.66 -0.4
170,544 - BACOVA_01960 0.70 -0.4

Or see this region's nucleotide sequence