Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_01622 and BACOVA_01623 are separated by 89 nucleotides BACOVA_01623 and BACOVA_01624 are separated by 37 nucleotides BACOVA_01624 and BACOVA_01625 are separated by 117 nucleotides
BACOVA_01622: BACOVA_01622 - Na/Pi-cotransporter II-like protein, at 127,554 to 129,251
_01622
BACOVA_01623: BACOVA_01623 - hypothetical protein, at 129,341 to 130,141
_01623
BACOVA_01624: BACOVA_01624 - rubredoxin, at 130,179 to 130,448
_01624
BACOVA_01625: BACOVA_01625 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 130,566 to 131,741
_01625
Position (kb) 129
130
131 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 128.501 kb on + strand, within BACOVA_01622 at 128.521 kb on + strand, within BACOVA_01622 at 128.521 kb on + strand, within BACOVA_01622 at 128.521 kb on + strand, within BACOVA_01622 at 129.257 kb on - strand at 129.261 kb on + strand at 129.286 kb on - strand at 129.288 kb on + strand at 129.294 kb on + strand at 129.294 kb on + strand at 129.295 kb on - strand at 129.295 kb on - strand at 129.299 kb on - strand at 129.317 kb on + strand at 129.321 kb on + strand at 129.324 kb on + strand at 129.325 kb on - strand at 129.327 kb on + strand at 129.346 kb on + strand at 129.346 kb on + strand at 129.346 kb on + strand at 129.347 kb on - strand at 129.347 kb on - strand at 129.351 kb on - strand at 129.351 kb on - strand at 129.351 kb on - strand at 129.354 kb on + strand at 129.354 kb on + strand at 129.354 kb on + strand at 129.354 kb on + strand at 129.355 kb on - strand at 129.355 kb on - strand at 129.383 kb on - strand at 129.398 kb on - strand at 129.398 kb on - strand at 129.398 kb on - strand at 129.403 kb on + strand at 129.484 kb on + strand, within BACOVA_01623 at 129.485 kb on - strand, within BACOVA_01623 at 129.487 kb on + strand, within BACOVA_01623 at 129.487 kb on + strand, within BACOVA_01623 at 129.489 kb on + strand, within BACOVA_01623 at 129.489 kb on + strand, within BACOVA_01623 at 129.489 kb on + strand, within BACOVA_01623 at 129.490 kb on - strand, within BACOVA_01623 at 129.492 kb on + strand, within BACOVA_01623 at 129.492 kb on + strand, within BACOVA_01623 at 129.492 kb on + strand, within BACOVA_01623 at 129.492 kb on + strand, within BACOVA_01623 at 129.493 kb on - strand, within BACOVA_01623 at 129.493 kb on - strand, within BACOVA_01623 at 129.495 kb on + strand, within BACOVA_01623 at 129.496 kb on - strand, within BACOVA_01623 at 129.520 kb on + strand, within BACOVA_01623 at 129.537 kb on + strand, within BACOVA_01623 at 129.557 kb on - strand, within BACOVA_01623 at 129.580 kb on + strand, within BACOVA_01623 at 129.599 kb on - strand, within BACOVA_01623 at 129.619 kb on + strand, within BACOVA_01623 at 129.620 kb on - strand, within BACOVA_01623 at 129.693 kb on + strand, within BACOVA_01623 at 129.704 kb on - strand, within BACOVA_01623 at 129.709 kb on + strand, within BACOVA_01623 at 129.719 kb on + strand, within BACOVA_01623 at 129.719 kb on + strand, within BACOVA_01623 at 129.748 kb on + strand, within BACOVA_01623 at 129.767 kb on + strand, within BACOVA_01623 at 129.767 kb on + strand, within BACOVA_01623 at 129.767 kb on + strand, within BACOVA_01623 at 129.793 kb on + strand, within BACOVA_01623 at 129.793 kb on + strand, within BACOVA_01623 at 129.861 kb on + strand, within BACOVA_01623 at 129.866 kb on + strand, within BACOVA_01623 at 129.868 kb on + strand, within BACOVA_01623 at 129.868 kb on + strand, within BACOVA_01623 at 129.869 kb on - strand, within BACOVA_01623 at 129.887 kb on + strand, within BACOVA_01623 at 129.899 kb on - strand, within BACOVA_01623 at 129.900 kb on + strand, within BACOVA_01623 at 129.901 kb on - strand, within BACOVA_01623 at 129.949 kb on + strand, within BACOVA_01623 at 129.949 kb on + strand, within BACOVA_01623 at 129.984 kb on - strand, within BACOVA_01623 at 129.984 kb on - strand, within BACOVA_01623 at 130.004 kb on + strand, within BACOVA_01623 at 130.014 kb on - strand, within BACOVA_01623 at 130.014 kb on - strand, within BACOVA_01623 at 130.036 kb on + strand, within BACOVA_01623 at 130.037 kb on - strand, within BACOVA_01623 at 130.039 kb on + strand, within BACOVA_01623 at 130.040 kb on - strand, within BACOVA_01623 at 130.041 kb on + strand, within BACOVA_01623 at 130.041 kb on + strand, within BACOVA_01623 at 130.042 kb on - strand, within BACOVA_01623 at 130.046 kb on - strand, within BACOVA_01623 at 130.081 kb on + strand at 130.106 kb on + strand at 130.127 kb on + strand at 130.130 kb on - strand at 130.130 kb on - strand at 130.130 kb on - strand at 130.131 kb on + strand at 130.131 kb on + strand at 130.131 kb on + strand at 130.132 kb on - strand at 130.135 kb on + strand at 130.135 kb on + strand at 130.135 kb on + strand at 130.135 kb on + strand at 130.136 kb on - strand at 130.136 kb on - strand at 130.136 kb on - strand at 130.138 kb on - strand at 130.158 kb on + strand at 130.161 kb on + strand at 130.189 kb on + strand at 130.222 kb on - strand, within BACOVA_01624 at 130.247 kb on + strand, within BACOVA_01624 at 130.248 kb on - strand, within BACOVA_01624 at 130.306 kb on + strand, within BACOVA_01624 at 130.313 kb on - strand, within BACOVA_01624 at 130.334 kb on - strand, within BACOVA_01624 at 130.374 kb on + strand, within BACOVA_01624 at 130.375 kb on - strand, within BACOVA_01624 at 130.377 kb on + strand, within BACOVA_01624 at 130.378 kb on - strand, within BACOVA_01624 at 130.396 kb on + strand, within BACOVA_01624 at 130.442 kb on + strand at 130.448 kb on + strand at 130.449 kb on - strand at 130.451 kb on + strand at 130.452 kb on - strand at 130.459 kb on + strand at 130.470 kb on + strand at 130.471 kb on - strand at 130.473 kb on + strand at 130.475 kb on + strand at 130.475 kb on + strand at 130.478 kb on + strand at 130.478 kb on + strand at 130.484 kb on + strand at 130.487 kb on - strand at 130.513 kb on + strand at 130.550 kb on + strand at 130.551 kb on - strand at 130.616 kb on + strand at 130.617 kb on - strand at 130.657 kb on + strand at 130.657 kb on + strand at 130.663 kb on + strand at 130.664 kb on - strand at 130.799 kb on + strand, within BACOVA_01625 at 130.834 kb on + strand, within BACOVA_01625 at 130.835 kb on - strand, within BACOVA_01625 at 130.895 kb on + strand, within BACOVA_01625 at 130.904 kb on + strand, within BACOVA_01625 at 130.904 kb on + strand, within BACOVA_01625 at 130.904 kb on + strand, within BACOVA_01625 at 130.905 kb on - strand, within BACOVA_01625 at 130.944 kb on + strand, within BACOVA_01625 at 130.975 kb on + strand, within BACOVA_01625 at 131.023 kb on + strand, within BACOVA_01625 at 131.029 kb on + strand, within BACOVA_01625 at 131.117 kb on + strand, within BACOVA_01625 at 131.117 kb on + strand, within BACOVA_01625 at 131.117 kb on + strand, within BACOVA_01625 at 131.141 kb on - strand, within BACOVA_01625 at 131.141 kb on - strand, within BACOVA_01625 at 131.141 kb on - strand, within BACOVA_01625
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 128,501 + BACOVA_01622 0.56 -0.6 128,521 + BACOVA_01622 0.57 -1.3 128,521 + BACOVA_01622 0.57 -1.9 128,521 + BACOVA_01622 0.57 -0.1 129,257 - +0.8 129,261 + +0.5 129,286 - -1.3 129,288 + +0.1 129,294 + +0.2 129,294 + +0.7 129,295 - -1.4 129,295 - +0.6 129,299 - -0.3 129,317 + +0.6 129,321 + +0.3 129,324 + +0.4 129,325 - +0.0 129,327 + +0.1 129,346 + +3.0 129,346 + -1.8 129,346 + -1.5 129,347 - -0.8 129,347 - -1.1 129,351 - -2.0 129,351 - -0.6 129,351 - +0.7 129,354 + -0.6 129,354 + +0.8 129,354 + +0.8 129,354 + +0.5 129,355 - +0.0 129,355 - -1.4 129,383 - -0.4 129,398 - -2.7 129,398 - -1.7 129,398 - +0.6 129,403 + -0.2 129,484 + BACOVA_01623 0.18 +0.4 129,485 - BACOVA_01623 0.18 -0.6 129,487 + BACOVA_01623 0.18 -0.0 129,487 + BACOVA_01623 0.18 -0.0 129,489 + BACOVA_01623 0.18 -0.0 129,489 + BACOVA_01623 0.18 +0.2 129,489 + BACOVA_01623 0.18 -1.7 129,490 - BACOVA_01623 0.19 +1.4 129,492 + BACOVA_01623 0.19 -0.3 129,492 + BACOVA_01623 0.19 +2.6 129,492 + BACOVA_01623 0.19 +0.7 129,492 + BACOVA_01623 0.19 -1.2 129,493 - BACOVA_01623 0.19 +0.5 129,493 - BACOVA_01623 0.19 +0.4 129,495 + BACOVA_01623 0.19 -0.4 129,496 - BACOVA_01623 0.19 -0.9 129,520 + BACOVA_01623 0.22 +0.7 129,537 + BACOVA_01623 0.24 -0.6 129,557 - BACOVA_01623 0.27 -1.1 129,580 + BACOVA_01623 0.30 -0.1 129,599 - BACOVA_01623 0.32 -0.9 129,619 + BACOVA_01623 0.35 -2.0 129,620 - BACOVA_01623 0.35 +2.4 129,693 + BACOVA_01623 0.44 -0.6 129,704 - BACOVA_01623 0.45 +2.4 129,709 + BACOVA_01623 0.46 -0.6 129,719 + BACOVA_01623 0.47 -0.8 129,719 + BACOVA_01623 0.47 +1.6 129,748 + BACOVA_01623 0.51 -0.8 129,767 + BACOVA_01623 0.53 -0.9 129,767 + BACOVA_01623 0.53 +1.0 129,767 + BACOVA_01623 0.53 -0.5 129,793 + BACOVA_01623 0.56 -0.6 129,793 + BACOVA_01623 0.56 +0.5 129,861 + BACOVA_01623 0.65 +0.4 129,866 + BACOVA_01623 0.66 -0.9 129,868 + BACOVA_01623 0.66 +0.2 129,868 + BACOVA_01623 0.66 -0.2 129,869 - BACOVA_01623 0.66 -0.4 129,887 + BACOVA_01623 0.68 -0.7 129,899 - BACOVA_01623 0.70 -0.6 129,900 + BACOVA_01623 0.70 +0.0 129,901 - BACOVA_01623 0.70 -1.1 129,949 + BACOVA_01623 0.76 -0.3 129,949 + BACOVA_01623 0.76 +0.2 129,984 - BACOVA_01623 0.80 -1.1 129,984 - BACOVA_01623 0.80 +0.5 130,004 + BACOVA_01623 0.83 -2.6 130,014 - BACOVA_01623 0.84 +1.1 130,014 - BACOVA_01623 0.84 -1.4 130,036 + BACOVA_01623 0.87 -0.3 130,037 - BACOVA_01623 0.87 -0.3 130,039 + BACOVA_01623 0.87 -1.3 130,040 - BACOVA_01623 0.87 -0.2 130,041 + BACOVA_01623 0.87 -2.4 130,041 + BACOVA_01623 0.87 -1.1 130,042 - BACOVA_01623 0.88 -0.3 130,046 - BACOVA_01623 0.88 -0.6 130,081 + -0.3 130,106 + +0.6 130,127 + -0.0 130,130 - +1.0 130,130 - +0.7 130,130 - +0.4 130,131 + +0.7 130,131 + -0.8 130,131 + +0.0 130,132 - +0.3 130,135 + +0.5 130,135 + -0.3 130,135 + +1.2 130,135 + +1.1 130,136 - -0.0 130,136 - +1.3 130,136 - -0.3 130,138 - +1.1 130,158 + +1.8 130,161 + -0.1 130,189 + +0.8 130,222 - BACOVA_01624 0.16 +0.6 130,247 + BACOVA_01624 0.25 +0.0 130,248 - BACOVA_01624 0.26 -1.4 130,306 + BACOVA_01624 0.47 +0.2 130,313 - BACOVA_01624 0.50 +0.9 130,334 - BACOVA_01624 0.57 -0.2 130,374 + BACOVA_01624 0.72 +0.3 130,375 - BACOVA_01624 0.73 -0.7 130,377 + BACOVA_01624 0.73 -0.6 130,378 - BACOVA_01624 0.74 -0.5 130,396 + BACOVA_01624 0.80 +0.0 130,442 + -0.3 130,448 + +1.0 130,449 - -1.5 130,451 + -0.9 130,452 - -1.2 130,459 + -0.2 130,470 + -0.8 130,471 - -0.5 130,473 + -0.4 130,475 + +1.3 130,475 + -0.1 130,478 + +1.3 130,478 + +0.1 130,484 + +1.3 130,487 - -1.0 130,513 + +0.1 130,550 + -1.2 130,551 - +0.9 130,616 + -0.5 130,617 - -0.4 130,657 + +0.4 130,657 + +0.1 130,663 + -0.7 130,664 - -0.2 130,799 + BACOVA_01625 0.20 -1.8 130,834 + BACOVA_01625 0.23 +0.1 130,835 - BACOVA_01625 0.23 +1.1 130,895 + BACOVA_01625 0.28 -1.2 130,904 + BACOVA_01625 0.29 -0.2 130,904 + BACOVA_01625 0.29 -0.8 130,904 + BACOVA_01625 0.29 -0.9 130,905 - BACOVA_01625 0.29 -0.1 130,944 + BACOVA_01625 0.32 -1.2 130,975 + BACOVA_01625 0.35 -1.1 131,023 + BACOVA_01625 0.39 -0.9 131,029 + BACOVA_01625 0.39 +1.4 131,117 + BACOVA_01625 0.47 -2.5 131,117 + BACOVA_01625 0.47 +0.2 131,117 + BACOVA_01625 0.47 -0.7 131,141 - BACOVA_01625 0.49 +0.4 131,141 - BACOVA_01625 0.49 +0.1 131,141 - BACOVA_01625 0.49 +0.1
Or see this region's nucleotide sequence