Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01389

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01388 and BACOVA_01389 are separated by 18 nucleotidesBACOVA_01389 and BACOVA_01390 are separated by 42 nucleotides BACOVA_01388: BACOVA_01388 - efflux transporter, RND family, MFP subunit, at 52,231 to 53,433 _01388 BACOVA_01389: BACOVA_01389 - RND transporter, HAE1 family, at 53,452 to 56,649 _01389 BACOVA_01390: BACOVA_01390 - efflux transporter, outer membrane factor lipoprotein, NodT family, at 56,692 to 58,056 _01390 Position (kb) 53 54 55 56 57Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.594 kb on + strand, within BACOVA_01388at 52.595 kb on - strand, within BACOVA_01388at 52.614 kb on - strand, within BACOVA_01388at 52.616 kb on - strand, within BACOVA_01388at 52.736 kb on - strand, within BACOVA_01388at 52.736 kb on - strand, within BACOVA_01388at 52.736 kb on - strand, within BACOVA_01388at 52.769 kb on + strand, within BACOVA_01388at 52.770 kb on - strand, within BACOVA_01388at 52.784 kb on - strand, within BACOVA_01388at 52.855 kb on + strand, within BACOVA_01388at 52.855 kb on + strand, within BACOVA_01388at 52.855 kb on + strand, within BACOVA_01388at 52.855 kb on + strand, within BACOVA_01388at 52.855 kb on + strand, within BACOVA_01388at 52.856 kb on - strand, within BACOVA_01388at 52.856 kb on - strand, within BACOVA_01388at 52.856 kb on - strand, within BACOVA_01388at 52.856 kb on - strand, within BACOVA_01388at 52.966 kb on - strand, within BACOVA_01388at 52.966 kb on - strand, within BACOVA_01388at 52.975 kb on + strand, within BACOVA_01388at 52.997 kb on - strand, within BACOVA_01388at 53.079 kb on + strand, within BACOVA_01388at 53.079 kb on + strand, within BACOVA_01388at 53.166 kb on + strand, within BACOVA_01388at 53.166 kb on + strand, within BACOVA_01388at 53.166 kb on + strand, within BACOVA_01388at 53.174 kb on - strand, within BACOVA_01388at 53.174 kb on - strand, within BACOVA_01388at 53.179 kb on + strand, within BACOVA_01388at 53.179 kb on + strand, within BACOVA_01388at 53.179 kb on + strand, within BACOVA_01388at 53.180 kb on - strand, within BACOVA_01388at 53.181 kb on + strand, within BACOVA_01388at 53.186 kb on + strand, within BACOVA_01388at 53.300 kb on + strand, within BACOVA_01388at 53.418 kb on + strandat 53.419 kb on - strandat 53.419 kb on - strandat 53.459 kb on + strandat 53.469 kb on + strandat 53.470 kb on - strandat 53.471 kb on + strandat 53.472 kb on - strandat 53.472 kb on - strandat 53.523 kb on + strandat 53.578 kb on - strandat 53.584 kb on - strandat 53.600 kb on - strandat 53.600 kb on - strandat 53.600 kb on - strandat 53.637 kb on + strandat 53.638 kb on - strandat 53.683 kb on + strandat 53.684 kb on - strandat 53.684 kb on - strandat 53.820 kb on - strand, within BACOVA_01389at 53.860 kb on - strand, within BACOVA_01389at 53.881 kb on + strand, within BACOVA_01389at 53.883 kb on + strand, within BACOVA_01389at 53.923 kb on + strand, within BACOVA_01389at 53.923 kb on + strand, within BACOVA_01389at 53.925 kb on + strand, within BACOVA_01389at 53.998 kb on + strand, within BACOVA_01389at 53.999 kb on - strand, within BACOVA_01389at 54.000 kb on + strand, within BACOVA_01389at 54.000 kb on + strand, within BACOVA_01389at 54.000 kb on + strand, within BACOVA_01389at 54.001 kb on - strand, within BACOVA_01389at 54.001 kb on - strand, within BACOVA_01389at 54.004 kb on - strand, within BACOVA_01389at 54.012 kb on - strand, within BACOVA_01389at 54.133 kb on + strand, within BACOVA_01389at 54.134 kb on - strand, within BACOVA_01389at 54.141 kb on + strand, within BACOVA_01389at 54.142 kb on - strand, within BACOVA_01389at 54.142 kb on - strand, within BACOVA_01389at 54.151 kb on + strand, within BACOVA_01389at 54.152 kb on - strand, within BACOVA_01389at 54.168 kb on + strand, within BACOVA_01389at 54.169 kb on - strand, within BACOVA_01389at 54.268 kb on + strand, within BACOVA_01389at 54.312 kb on + strand, within BACOVA_01389at 54.350 kb on + strand, within BACOVA_01389at 54.487 kb on - strand, within BACOVA_01389at 54.502 kb on + strand, within BACOVA_01389at 54.512 kb on - strand, within BACOVA_01389at 54.512 kb on - strand, within BACOVA_01389at 54.538 kb on - strand, within BACOVA_01389at 54.579 kb on + strand, within BACOVA_01389at 54.580 kb on - strand, within BACOVA_01389at 54.675 kb on + strand, within BACOVA_01389at 54.727 kb on + strand, within BACOVA_01389at 54.727 kb on + strand, within BACOVA_01389at 54.728 kb on - strand, within BACOVA_01389at 54.728 kb on - strand, within BACOVA_01389at 54.728 kb on - strand, within BACOVA_01389at 54.730 kb on - strand, within BACOVA_01389at 54.730 kb on - strand, within BACOVA_01389at 54.738 kb on + strand, within BACOVA_01389at 54.762 kb on + strand, within BACOVA_01389at 54.844 kb on + strand, within BACOVA_01389at 54.844 kb on + strand, within BACOVA_01389at 54.883 kb on - strand, within BACOVA_01389at 54.943 kb on + strand, within BACOVA_01389at 54.943 kb on + strand, within BACOVA_01389at 54.944 kb on - strand, within BACOVA_01389at 54.945 kb on + strand, within BACOVA_01389at 54.948 kb on + strand, within BACOVA_01389at 54.949 kb on - strand, within BACOVA_01389at 55.029 kb on + strand, within BACOVA_01389at 55.034 kb on - strand, within BACOVA_01389at 55.046 kb on + strand, within BACOVA_01389at 55.047 kb on - strand, within BACOVA_01389at 55.103 kb on + strand, within BACOVA_01389at 55.104 kb on - strand, within BACOVA_01389at 55.115 kb on + strand, within BACOVA_01389at 55.116 kb on - strand, within BACOVA_01389at 55.125 kb on + strand, within BACOVA_01389at 55.125 kb on + strand, within BACOVA_01389at 55.167 kb on + strand, within BACOVA_01389at 55.250 kb on + strand, within BACOVA_01389at 55.250 kb on + strand, within BACOVA_01389at 55.250 kb on + strand, within BACOVA_01389at 55.251 kb on - strand, within BACOVA_01389at 55.256 kb on + strand, within BACOVA_01389at 55.257 kb on - strand, within BACOVA_01389at 55.315 kb on - strand, within BACOVA_01389at 55.403 kb on + strand, within BACOVA_01389at 55.404 kb on - strand, within BACOVA_01389at 55.404 kb on - strand, within BACOVA_01389at 55.406 kb on - strand, within BACOVA_01389at 55.423 kb on - strand, within BACOVA_01389at 55.482 kb on + strand, within BACOVA_01389at 55.482 kb on + strand, within BACOVA_01389at 55.524 kb on + strand, within BACOVA_01389at 55.556 kb on - strand, within BACOVA_01389at 55.556 kb on - strand, within BACOVA_01389at 55.586 kb on + strand, within BACOVA_01389at 55.692 kb on + strand, within BACOVA_01389at 55.720 kb on + strand, within BACOVA_01389at 55.721 kb on - strand, within BACOVA_01389at 55.721 kb on - strand, within BACOVA_01389at 55.754 kb on - strand, within BACOVA_01389at 55.879 kb on + strand, within BACOVA_01389at 55.908 kb on + strand, within BACOVA_01389at 55.908 kb on + strand, within BACOVA_01389at 55.909 kb on - strand, within BACOVA_01389at 55.912 kb on + strand, within BACOVA_01389at 55.913 kb on - strand, within BACOVA_01389at 55.913 kb on - strand, within BACOVA_01389at 55.915 kb on - strand, within BACOVA_01389at 55.953 kb on + strand, within BACOVA_01389at 55.954 kb on - strand, within BACOVA_01389at 55.954 kb on - strand, within BACOVA_01389at 55.954 kb on - strand, within BACOVA_01389at 55.956 kb on + strand, within BACOVA_01389at 56.015 kb on - strand, within BACOVA_01389at 56.026 kb on + strand, within BACOVA_01389at 56.034 kb on + strand, within BACOVA_01389at 56.105 kb on - strand, within BACOVA_01389at 56.126 kb on - strand, within BACOVA_01389at 56.223 kb on + strand, within BACOVA_01389at 56.224 kb on - strand, within BACOVA_01389at 56.224 kb on - strand, within BACOVA_01389at 56.247 kb on + strand, within BACOVA_01389at 56.247 kb on + strand, within BACOVA_01389at 56.320 kb on - strand, within BACOVA_01389at 56.469 kb on - strandat 56.469 kb on - strandat 56.471 kb on + strandat 56.472 kb on - strandat 56.472 kb on - strandat 56.478 kb on + strandat 56.478 kb on + strandat 56.491 kb on - strandat 56.526 kb on + strandat 56.527 kb on - strandat 56.527 kb on - strandat 56.632 kb on - strandat 56.648 kb on - strandat 56.648 kb on - strandat 56.678 kb on + strandat 56.683 kb on + strandat 56.736 kb on + strandat 56.737 kb on - strandat 56.749 kb on + strandat 56.758 kb on + strandat 56.792 kb on - strandat 56.869 kb on + strand, within BACOVA_01390at 56.870 kb on - strand, within BACOVA_01390at 56.870 kb on - strand, within BACOVA_01390at 56.978 kb on - strand, within BACOVA_01390at 57.040 kb on - strand, within BACOVA_01390at 57.176 kb on + strand, within BACOVA_01390at 57.192 kb on + strand, within BACOVA_01390at 57.196 kb on + strand, within BACOVA_01390at 57.197 kb on - strand, within BACOVA_01390at 57.197 kb on - strand, within BACOVA_01390at 57.197 kb on - strand, within BACOVA_01390at 57.199 kb on + strand, within BACOVA_01390at 57.199 kb on + strand, within BACOVA_01390at 57.200 kb on - strand, within BACOVA_01390at 57.233 kb on + strand, within BACOVA_01390at 57.341 kb on - strand, within BACOVA_01390at 57.348 kb on + strand, within BACOVA_01390at 57.350 kb on + strand, within BACOVA_01390at 57.350 kb on - strand, within BACOVA_01390at 57.351 kb on - strand, within BACOVA_01390at 57.354 kb on + strand, within BACOVA_01390at 57.498 kb on - strand, within BACOVA_01390at 57.559 kb on + strand, within BACOVA_01390at 57.590 kb on - strand, within BACOVA_01390

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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52,594 + BACOVA_01388 0.30 +0.0
52,595 - BACOVA_01388 0.30 +0.3
52,614 - BACOVA_01388 0.32 +1.9
52,616 - BACOVA_01388 0.32 +1.4
52,736 - BACOVA_01388 0.42 +1.0
52,736 - BACOVA_01388 0.42 +1.7
52,736 - BACOVA_01388 0.42 -0.5
52,769 + BACOVA_01388 0.45 +0.2
52,770 - BACOVA_01388 0.45 +0.7
52,784 - BACOVA_01388 0.46 -0.1
52,855 + BACOVA_01388 0.52 -0.4
52,855 + BACOVA_01388 0.52 -0.4
52,855 + BACOVA_01388 0.52 +0.3
52,855 + BACOVA_01388 0.52 -1.1
52,855 + BACOVA_01388 0.52 +0.8
52,856 - BACOVA_01388 0.52 -0.8
52,856 - BACOVA_01388 0.52 +0.2
52,856 - BACOVA_01388 0.52 +0.2
52,856 - BACOVA_01388 0.52 +0.2
52,966 - BACOVA_01388 0.61 -1.9
52,966 - BACOVA_01388 0.61 +0.7
52,975 + BACOVA_01388 0.62 +2.4
52,997 - BACOVA_01388 0.64 -1.3
53,079 + BACOVA_01388 0.70 +2.2
53,079 + BACOVA_01388 0.70 -0.4
53,166 + BACOVA_01388 0.78 -1.5
53,166 + BACOVA_01388 0.78 +0.9
53,166 + BACOVA_01388 0.78 -0.7
53,174 - BACOVA_01388 0.78 -0.2
53,174 - BACOVA_01388 0.78 +1.7
53,179 + BACOVA_01388 0.79 +1.6
53,179 + BACOVA_01388 0.79 +0.3
53,179 + BACOVA_01388 0.79 -0.3
53,180 - BACOVA_01388 0.79 -1.1
53,181 + BACOVA_01388 0.79 -0.7
53,186 + BACOVA_01388 0.79 -1.5
53,300 + BACOVA_01388 0.89 -0.4
53,418 + -1.4
53,419 - -0.6
53,419 - -1.0
53,459 + +0.5
53,469 + +0.5
53,470 - -0.1
53,471 + +0.7
53,472 - -0.4
53,472 - -0.4
53,523 + -0.6
53,578 - +0.7
53,584 - -0.9
53,600 - +0.9
53,600 - -0.3
53,600 - +1.3
53,637 + -1.2
53,638 - -0.2
53,683 + +0.3
53,684 - -0.9
53,684 - +1.8
53,820 - BACOVA_01389 0.12 +2.2
53,860 - BACOVA_01389 0.13 +0.0
53,881 + BACOVA_01389 0.13 -0.9
53,883 + BACOVA_01389 0.13 +0.3
53,923 + BACOVA_01389 0.15 -0.2
53,923 + BACOVA_01389 0.15 -0.5
53,925 + BACOVA_01389 0.15 +1.4
53,998 + BACOVA_01389 0.17 -0.3
53,999 - BACOVA_01389 0.17 -0.4
54,000 + BACOVA_01389 0.17 +0.3
54,000 + BACOVA_01389 0.17 +1.4
54,000 + BACOVA_01389 0.17 -0.9
54,001 - BACOVA_01389 0.17 +0.5
54,001 - BACOVA_01389 0.17 +0.5
54,004 - BACOVA_01389 0.17 +0.3
54,012 - BACOVA_01389 0.18 -1.7
54,133 + BACOVA_01389 0.21 +1.0
54,134 - BACOVA_01389 0.21 +1.1
54,141 + BACOVA_01389 0.22 +1.4
54,142 - BACOVA_01389 0.22 +0.6
54,142 - BACOVA_01389 0.22 +0.4
54,151 + BACOVA_01389 0.22 -1.1
54,152 - BACOVA_01389 0.22 +1.9
54,168 + BACOVA_01389 0.22 +0.7
54,169 - BACOVA_01389 0.22 +0.9
54,268 + BACOVA_01389 0.26 +0.2
54,312 + BACOVA_01389 0.27 -0.6
54,350 + BACOVA_01389 0.28 +1.9
54,487 - BACOVA_01389 0.32 -0.1
54,502 + BACOVA_01389 0.33 -0.9
54,512 - BACOVA_01389 0.33 +0.8
54,512 - BACOVA_01389 0.33 +0.9
54,538 - BACOVA_01389 0.34 -0.4
54,579 + BACOVA_01389 0.35 +0.1
54,580 - BACOVA_01389 0.35 +0.0
54,675 + BACOVA_01389 0.38 +1.5
54,727 + BACOVA_01389 0.40 -0.6
54,727 + BACOVA_01389 0.40 +0.6
54,728 - BACOVA_01389 0.40 -0.2
54,728 - BACOVA_01389 0.40 -0.8
54,728 - BACOVA_01389 0.40 -1.3
54,730 - BACOVA_01389 0.40 +0.1
54,730 - BACOVA_01389 0.40 +0.2
54,738 + BACOVA_01389 0.40 -0.8
54,762 + BACOVA_01389 0.41 +0.6
54,844 + BACOVA_01389 0.44 +0.7
54,844 + BACOVA_01389 0.44 -1.4
54,883 - BACOVA_01389 0.45 +0.4
54,943 + BACOVA_01389 0.47 -1.2
54,943 + BACOVA_01389 0.47 +0.0
54,944 - BACOVA_01389 0.47 +1.2
54,945 + BACOVA_01389 0.47 +1.6
54,948 + BACOVA_01389 0.47 -1.0
54,949 - BACOVA_01389 0.47 -1.1
55,029 + BACOVA_01389 0.49 +0.1
55,034 - BACOVA_01389 0.49 -0.5
55,046 + BACOVA_01389 0.50 +0.1
55,047 - BACOVA_01389 0.50 +0.5
55,103 + BACOVA_01389 0.52 +0.0
55,104 - BACOVA_01389 0.52 +1.5
55,115 + BACOVA_01389 0.52 -0.3
55,116 - BACOVA_01389 0.52 -0.6
55,125 + BACOVA_01389 0.52 +0.2
55,125 + BACOVA_01389 0.52 -1.8
55,167 + BACOVA_01389 0.54 +0.3
55,250 + BACOVA_01389 0.56 +1.0
55,250 + BACOVA_01389 0.56 -1.1
55,250 + BACOVA_01389 0.56 -0.2
55,251 - BACOVA_01389 0.56 +1.6
55,256 + BACOVA_01389 0.56 -0.1
55,257 - BACOVA_01389 0.56 -0.3
55,315 - BACOVA_01389 0.58 -1.1
55,403 + BACOVA_01389 0.61 -1.3
55,404 - BACOVA_01389 0.61 +0.2
55,404 - BACOVA_01389 0.61 -0.5
55,406 - BACOVA_01389 0.61 +1.1
55,423 - BACOVA_01389 0.62 -1.3
55,482 + BACOVA_01389 0.63 -1.4
55,482 + BACOVA_01389 0.63 -0.1
55,524 + BACOVA_01389 0.65 +0.2
55,556 - BACOVA_01389 0.66 +0.2
55,556 - BACOVA_01389 0.66 +0.2
55,586 + BACOVA_01389 0.67 -0.6
55,692 + BACOVA_01389 0.70 -0.1
55,720 + BACOVA_01389 0.71 +0.6
55,721 - BACOVA_01389 0.71 +0.2
55,721 - BACOVA_01389 0.71 -0.1
55,754 - BACOVA_01389 0.72 -0.2
55,879 + BACOVA_01389 0.76 +1.0
55,908 + BACOVA_01389 0.77 -0.1
55,908 + BACOVA_01389 0.77 +0.2
55,909 - BACOVA_01389 0.77 -0.8
55,912 + BACOVA_01389 0.77 +0.1
55,913 - BACOVA_01389 0.77 -0.7
55,913 - BACOVA_01389 0.77 -2.0
55,915 - BACOVA_01389 0.77 -0.6
55,953 + BACOVA_01389 0.78 -0.5
55,954 - BACOVA_01389 0.78 -1.5
55,954 - BACOVA_01389 0.78 -0.5
55,954 - BACOVA_01389 0.78 -0.6
55,956 + BACOVA_01389 0.78 +0.6
56,015 - BACOVA_01389 0.80 -0.0
56,026 + BACOVA_01389 0.80 -0.1
56,034 + BACOVA_01389 0.81 +1.6
56,105 - BACOVA_01389 0.83 -0.5
56,126 - BACOVA_01389 0.84 -0.4
56,223 + BACOVA_01389 0.87 -3.4
56,224 - BACOVA_01389 0.87 -1.0
56,224 - BACOVA_01389 0.87 -1.1
56,247 + BACOVA_01389 0.87 +0.7
56,247 + BACOVA_01389 0.87 -1.2
56,320 - BACOVA_01389 0.90 +0.1
56,469 - -1.5
56,469 - -1.6
56,471 + -2.1
56,472 - +1.5
56,472 - +1.5
56,478 + -0.6
56,478 + +1.4
56,491 - -1.6
56,526 + -0.2
56,527 - +1.2
56,527 - -0.7
56,632 - -0.2
56,648 - +0.6
56,648 - +0.1
56,678 + -0.6
56,683 + -0.4
56,736 + +0.3
56,737 - -1.3
56,749 + +0.0
56,758 + +0.4
56,792 - -0.5
56,869 + BACOVA_01390 0.13 +0.7
56,870 - BACOVA_01390 0.13 -0.3
56,870 - BACOVA_01390 0.13 -0.1
56,978 - BACOVA_01390 0.21 +1.2
57,040 - BACOVA_01390 0.25 +0.4
57,176 + BACOVA_01390 0.35 +0.4
57,192 + BACOVA_01390 0.37 -0.6
57,196 + BACOVA_01390 0.37 +1.2
57,197 - BACOVA_01390 0.37 +1.4
57,197 - BACOVA_01390 0.37 +0.5
57,197 - BACOVA_01390 0.37 -0.7
57,199 + BACOVA_01390 0.37 -0.1
57,199 + BACOVA_01390 0.37 -0.1
57,200 - BACOVA_01390 0.37 +0.9
57,233 + BACOVA_01390 0.40 +1.2
57,341 - BACOVA_01390 0.48 -1.5
57,348 + BACOVA_01390 0.48 -0.9
57,350 + BACOVA_01390 0.48 -0.1
57,350 - BACOVA_01390 0.48 +0.4
57,351 - BACOVA_01390 0.48 -0.4
57,354 + BACOVA_01390 0.48 -2.0
57,498 - BACOVA_01390 0.59 -0.6
57,559 + BACOVA_01390 0.64 +0.3
57,590 - BACOVA_01390 0.66 -0.3

Or see this region's nucleotide sequence