Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01328

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01325 and BACOVA_01326 overlap by 23 nucleotidesBACOVA_01326 and BACOVA_01328 are separated by 25 nucleotidesBACOVA_01328 and BACOVA_01327 overlap by 41 nucleotidesBACOVA_01327 and BACOVA_01329 are separated by 148 nucleotides BACOVA_01325: BACOVA_01325 - hypothetical protein, at 132,701 to 133,483 _01325 BACOVA_01326: BACOVA_01326 - hypothetical protein, at 133,461 to 133,844 _01326 BACOVA_01328: BACOVA_01328 - hypothetical protein, at 133,870 to 135,486 _01328 BACOVA_01327: BACOVA_01327 - hypothetical protein, at 135,446 to 135,574 _01327 BACOVA_01329: BACOVA_01329 - oxidoreductase, aldo/keto reductase family protein, at 135,723 to 136,565 _01329 Position (kb) 133 134 135 136Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 132.963 kb on + strand, within BACOVA_01325at 132.964 kb on - strand, within BACOVA_01325at 133.032 kb on + strand, within BACOVA_01325at 133.044 kb on + strand, within BACOVA_01325at 133.069 kb on - strand, within BACOVA_01325at 133.071 kb on + strand, within BACOVA_01325at 133.072 kb on - strand, within BACOVA_01325at 133.123 kb on + strand, within BACOVA_01325at 133.124 kb on - strand, within BACOVA_01325at 133.131 kb on + strand, within BACOVA_01325at 133.146 kb on + strand, within BACOVA_01325at 133.175 kb on + strand, within BACOVA_01325at 133.227 kb on + strand, within BACOVA_01325at 133.233 kb on + strand, within BACOVA_01325at 133.245 kb on + strand, within BACOVA_01325at 133.246 kb on - strand, within BACOVA_01325at 133.246 kb on - strand, within BACOVA_01325at 133.278 kb on + strand, within BACOVA_01325at 133.283 kb on - strand, within BACOVA_01325at 133.300 kb on - strand, within BACOVA_01325at 133.402 kb on + strand, within BACOVA_01325at 133.402 kb on + strand, within BACOVA_01325at 133.477 kb on + strandat 133.477 kb on + strandat 133.478 kb on - strandat 133.478 kb on - strandat 133.479 kb on + strandat 133.479 kb on + strandat 133.480 kb on - strandat 133.485 kb on + strandat 133.569 kb on + strand, within BACOVA_01326at 133.569 kb on + strand, within BACOVA_01326at 133.585 kb on - strand, within BACOVA_01326at 133.634 kb on + strand, within BACOVA_01326at 133.634 kb on + strand, within BACOVA_01326at 133.635 kb on - strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.672 kb on + strand, within BACOVA_01326at 133.673 kb on - strand, within BACOVA_01326at 133.703 kb on - strand, within BACOVA_01326at 133.762 kb on + strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.763 kb on - strand, within BACOVA_01326at 133.794 kb on - strand, within BACOVA_01326at 133.838 kb on - strandat 133.884 kb on + strandat 133.886 kb on + strandat 133.886 kb on + strandat 134.013 kb on + strandat 134.014 kb on - strandat 134.023 kb on + strandat 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.051 kb on + strand, within BACOVA_01328at 134.113 kb on + strand, within BACOVA_01328at 134.113 kb on + strand, within BACOVA_01328at 134.123 kb on - strand, within BACOVA_01328at 134.211 kb on + strand, within BACOVA_01328at 134.211 kb on + strand, within BACOVA_01328at 134.253 kb on + strand, within BACOVA_01328at 134.254 kb on - strand, within BACOVA_01328at 134.259 kb on + strand, within BACOVA_01328at 134.295 kb on + strand, within BACOVA_01328at 134.305 kb on - strand, within BACOVA_01328at 134.305 kb on - strand, within BACOVA_01328at 134.359 kb on - strand, within BACOVA_01328at 134.386 kb on + strand, within BACOVA_01328at 134.387 kb on - strand, within BACOVA_01328at 134.391 kb on + strand, within BACOVA_01328at 134.392 kb on - strand, within BACOVA_01328at 134.392 kb on - strand, within BACOVA_01328at 134.400 kb on - strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.457 kb on + strand, within BACOVA_01328at 134.461 kb on + strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.462 kb on - strand, within BACOVA_01328at 134.515 kb on - strand, within BACOVA_01328at 134.515 kb on - strand, within BACOVA_01328at 134.516 kb on + strand, within BACOVA_01328at 134.516 kb on + strand, within BACOVA_01328at 134.517 kb on - strand, within BACOVA_01328at 134.616 kb on - strand, within BACOVA_01328at 134.619 kb on + strand, within BACOVA_01328at 134.620 kb on - strand, within BACOVA_01328at 134.780 kb on + strand, within BACOVA_01328at 134.780 kb on + strand, within BACOVA_01328at 134.781 kb on - strand, within BACOVA_01328at 134.800 kb on + strand, within BACOVA_01328at 134.801 kb on - strand, within BACOVA_01328at 135.023 kb on - strand, within BACOVA_01328at 135.033 kb on + strand, within BACOVA_01328at 135.034 kb on - strand, within BACOVA_01328at 135.034 kb on - strand, within BACOVA_01328at 135.066 kb on + strand, within BACOVA_01328at 135.093 kb on + strand, within BACOVA_01328at 135.098 kb on - strand, within BACOVA_01328at 135.123 kb on + strand, within BACOVA_01328at 135.124 kb on - strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.223 kb on + strand, within BACOVA_01328at 135.249 kb on + strand, within BACOVA_01328at 135.250 kb on - strand, within BACOVA_01328at 135.294 kb on + strand, within BACOVA_01328at 135.294 kb on + strand, within BACOVA_01328at 135.295 kb on - strand, within BACOVA_01328at 135.349 kb on + strandat 135.349 kb on + strandat 135.349 kb on + strandat 135.350 kb on - strandat 135.350 kb on - strandat 135.350 kb on - strandat 135.353 kb on + strandat 135.354 kb on - strandat 135.403 kb on + strandat 135.403 kb on + strandat 135.451 kb on + strandat 135.463 kb on + strandat 135.464 kb on - strandat 135.477 kb on - strandat 135.481 kb on - strandat 135.508 kb on - strand, within BACOVA_01327at 135.515 kb on + strand, within BACOVA_01327at 135.515 kb on + strand, within BACOVA_01327at 135.557 kb on + strand, within BACOVA_01327at 135.558 kb on - strand, within BACOVA_01327at 135.559 kb on + strand, within BACOVA_01327at 135.618 kb on - strandat 135.623 kb on - strandat 135.626 kb on + strandat 135.651 kb on + strandat 135.660 kb on - strandat 135.713 kb on - strandat 135.733 kb on + strandat 135.814 kb on + strand, within BACOVA_01329at 135.846 kb on - strand, within BACOVA_01329at 135.869 kb on + strand, within BACOVA_01329at 135.884 kb on - strand, within BACOVA_01329at 135.944 kb on - strand, within BACOVA_01329at 135.944 kb on - strand, within BACOVA_01329at 135.974 kb on + strand, within BACOVA_01329at 136.019 kb on + strand, within BACOVA_01329at 136.021 kb on + strand, within BACOVA_01329at 136.028 kb on - strand, within BACOVA_01329at 136.059 kb on + strand, within BACOVA_01329at 136.060 kb on - strand, within BACOVA_01329at 136.069 kb on - strand, within BACOVA_01329at 136.089 kb on + strand, within BACOVA_01329at 136.089 kb on + strand, within BACOVA_01329at 136.090 kb on - strand, within BACOVA_01329at 136.091 kb on + strand, within BACOVA_01329at 136.092 kb on - strand, within BACOVA_01329at 136.092 kb on - strand, within BACOVA_01329at 136.131 kb on + strand, within BACOVA_01329at 136.132 kb on - strand, within BACOVA_01329at 136.132 kb on - strand, within BACOVA_01329at 136.220 kb on - strand, within BACOVA_01329at 136.234 kb on + strand, within BACOVA_01329at 136.245 kb on + strand, within BACOVA_01329at 136.245 kb on + strand, within BACOVA_01329at 136.246 kb on - strand, within BACOVA_01329at 136.250 kb on + strand, within BACOVA_01329at 136.253 kb on + strand, within BACOVA_01329at 136.388 kb on + strand, within BACOVA_01329at 136.389 kb on - strand, within BACOVA_01329

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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132,963 + BACOVA_01325 0.33 +0.0
132,964 - BACOVA_01325 0.34 -1.1
133,032 + BACOVA_01325 0.42 +0.0
133,044 + BACOVA_01325 0.44 +0.3
133,069 - BACOVA_01325 0.47 -1.3
133,071 + BACOVA_01325 0.47 +0.4
133,072 - BACOVA_01325 0.47 -1.9
133,123 + BACOVA_01325 0.54 +1.8
133,124 - BACOVA_01325 0.54 -0.6
133,131 + BACOVA_01325 0.55 -1.8
133,146 + BACOVA_01325 0.57 +0.4
133,175 + BACOVA_01325 0.61 -3.3
133,227 + BACOVA_01325 0.67 +1.1
133,233 + BACOVA_01325 0.68 +2.5
133,245 + BACOVA_01325 0.69 +0.4
133,246 - BACOVA_01325 0.70 +0.3
133,246 - BACOVA_01325 0.70 -0.3
133,278 + BACOVA_01325 0.74 +0.8
133,283 - BACOVA_01325 0.74 -0.0
133,300 - BACOVA_01325 0.77 -0.8
133,402 + BACOVA_01325 0.90 +1.8
133,402 + BACOVA_01325 0.90 +0.4
133,477 + -2.0
133,477 + -1.2
133,478 - -1.0
133,478 - -2.6
133,479 + +0.6
133,479 + +0.9
133,480 - +0.5
133,485 + -0.8
133,569 + BACOVA_01326 0.28 +1.2
133,569 + BACOVA_01326 0.28 -0.8
133,585 - BACOVA_01326 0.32 +0.3
133,634 + BACOVA_01326 0.45 +0.8
133,634 + BACOVA_01326 0.45 -0.2
133,635 - BACOVA_01326 0.45 +1.3
133,672 + BACOVA_01326 0.55 -0.0
133,672 + BACOVA_01326 0.55 +2.2
133,672 + BACOVA_01326 0.55 +0.6
133,673 - BACOVA_01326 0.55 +0.7
133,703 - BACOVA_01326 0.63 +1.4
133,762 + BACOVA_01326 0.78 -1.5
133,763 - BACOVA_01326 0.79 -0.2
133,763 - BACOVA_01326 0.79 +1.1
133,763 - BACOVA_01326 0.79 +0.2
133,794 - BACOVA_01326 0.87 +1.5
133,838 - -0.1
133,884 + -1.3
133,886 + -1.5
133,886 + -1.0
134,013 + -1.1
134,014 - -1.4
134,023 + -1.7
134,051 + BACOVA_01328 0.11 -0.5
134,051 + BACOVA_01328 0.11 -2.8
134,051 + BACOVA_01328 0.11 +0.1
134,051 + BACOVA_01328 0.11 -0.2
134,113 + BACOVA_01328 0.15 -0.1
134,113 + BACOVA_01328 0.15 +0.7
134,123 - BACOVA_01328 0.16 +0.1
134,211 + BACOVA_01328 0.21 -0.1
134,211 + BACOVA_01328 0.21 +0.9
134,253 + BACOVA_01328 0.24 +0.4
134,254 - BACOVA_01328 0.24 +1.5
134,259 + BACOVA_01328 0.24 -1.0
134,295 + BACOVA_01328 0.26 +0.0
134,305 - BACOVA_01328 0.27 +0.8
134,305 - BACOVA_01328 0.27 +0.4
134,359 - BACOVA_01328 0.30 +0.4
134,386 + BACOVA_01328 0.32 -1.1
134,387 - BACOVA_01328 0.32 +1.2
134,391 + BACOVA_01328 0.32 +0.1
134,392 - BACOVA_01328 0.32 -0.8
134,392 - BACOVA_01328 0.32 -0.4
134,400 - BACOVA_01328 0.33 +0.1
134,457 + BACOVA_01328 0.36 +1.1
134,457 + BACOVA_01328 0.36 -0.6
134,457 + BACOVA_01328 0.36 -0.6
134,457 + BACOVA_01328 0.36 -2.0
134,461 + BACOVA_01328 0.37 +0.0
134,462 - BACOVA_01328 0.37 -1.1
134,462 - BACOVA_01328 0.37 -0.3
134,462 - BACOVA_01328 0.37 -0.8
134,515 - BACOVA_01328 0.40 +2.0
134,515 - BACOVA_01328 0.40 -1.0
134,516 + BACOVA_01328 0.40 -0.5
134,516 + BACOVA_01328 0.40 +0.6
134,517 - BACOVA_01328 0.40 -0.2
134,616 - BACOVA_01328 0.46 -0.4
134,619 + BACOVA_01328 0.46 +1.5
134,620 - BACOVA_01328 0.46 -0.6
134,780 + BACOVA_01328 0.56 +0.9
134,780 + BACOVA_01328 0.56 -1.3
134,781 - BACOVA_01328 0.56 -0.6
134,800 + BACOVA_01328 0.58 +1.6
134,801 - BACOVA_01328 0.58 +0.1
135,023 - BACOVA_01328 0.71 -1.4
135,033 + BACOVA_01328 0.72 +0.4
135,034 - BACOVA_01328 0.72 -0.0
135,034 - BACOVA_01328 0.72 +0.1
135,066 + BACOVA_01328 0.74 -0.2
135,093 + BACOVA_01328 0.76 -0.5
135,098 - BACOVA_01328 0.76 -0.7
135,123 + BACOVA_01328 0.77 -0.1
135,124 - BACOVA_01328 0.78 -0.4
135,223 + BACOVA_01328 0.84 +0.7
135,223 + BACOVA_01328 0.84 -0.8
135,223 + BACOVA_01328 0.84 +1.6
135,249 + BACOVA_01328 0.85 -0.2
135,250 - BACOVA_01328 0.85 -1.6
135,294 + BACOVA_01328 0.88 -1.4
135,294 + BACOVA_01328 0.88 -1.2
135,295 - BACOVA_01328 0.88 -0.8
135,349 + +0.5
135,349 + +1.0
135,349 + +0.5
135,350 - -1.1
135,350 - +0.4
135,350 - +0.0
135,353 + +0.1
135,354 - +0.0
135,403 + -0.5
135,403 + -0.1
135,451 + +0.1
135,463 + -1.5
135,464 - +1.9
135,477 - +0.7
135,481 - +2.0
135,508 - BACOVA_01327 0.48 -0.9
135,515 + BACOVA_01327 0.53 +0.5
135,515 + BACOVA_01327 0.53 -1.6
135,557 + BACOVA_01327 0.86 -0.6
135,558 - BACOVA_01327 0.87 +1.1
135,559 + BACOVA_01327 0.88 -0.4
135,618 - -1.4
135,623 - +0.7
135,626 + +2.2
135,651 + +1.8
135,660 - +0.8
135,713 - -0.4
135,733 + -1.3
135,814 + BACOVA_01329 0.11 -1.5
135,846 - BACOVA_01329 0.15 -1.2
135,869 + BACOVA_01329 0.17 -0.1
135,884 - BACOVA_01329 0.19 +1.8
135,944 - BACOVA_01329 0.26 +0.7
135,944 - BACOVA_01329 0.26 -0.6
135,974 + BACOVA_01329 0.30 -0.4
136,019 + BACOVA_01329 0.35 +1.3
136,021 + BACOVA_01329 0.35 +1.4
136,028 - BACOVA_01329 0.36 +1.3
136,059 + BACOVA_01329 0.40 +1.6
136,060 - BACOVA_01329 0.40 +0.8
136,069 - BACOVA_01329 0.41 +0.5
136,089 + BACOVA_01329 0.43 +1.3
136,089 + BACOVA_01329 0.43 +0.1
136,090 - BACOVA_01329 0.44 +0.3
136,091 + BACOVA_01329 0.44 +1.4
136,092 - BACOVA_01329 0.44 +0.3
136,092 - BACOVA_01329 0.44 +0.8
136,131 + BACOVA_01329 0.48 -0.1
136,132 - BACOVA_01329 0.49 -1.2
136,132 - BACOVA_01329 0.49 -0.7
136,220 - BACOVA_01329 0.59 -0.4
136,234 + BACOVA_01329 0.61 -2.1
136,245 + BACOVA_01329 0.62 -1.2
136,245 + BACOVA_01329 0.62 -0.8
136,246 - BACOVA_01329 0.62 -1.5
136,250 + BACOVA_01329 0.63 +0.9
136,253 + BACOVA_01329 0.63 -1.0
136,388 + BACOVA_01329 0.79 +0.2
136,389 - BACOVA_01329 0.79 -0.7

Or see this region's nucleotide sequence