Experiment: Xylan from Beechwood 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00912 and BACOVA_00913 are separated by 85 nucleotides BACOVA_00913 and BACOVA_00914 are separated by 13 nucleotides
BACOVA_00912: BACOVA_00912 - peptidase M16 inactive domain protein, at 45,369 to 46,589
_00912
BACOVA_00913: BACOVA_00913 - hypothetical protein, at 46,675 to 48,243
_00913
BACOVA_00914: BACOVA_00914 - hypothetical protein, at 48,257 to 49,354
_00914
Position (kb) 46
47
48
49 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 45.681 kb on - strand, within BACOVA_00912 at 45.686 kb on - strand, within BACOVA_00912 at 45.686 kb on - strand, within BACOVA_00912 at 45.686 kb on - strand, within BACOVA_00912 at 45.715 kb on + strand, within BACOVA_00912 at 45.716 kb on - strand, within BACOVA_00912 at 45.756 kb on + strand, within BACOVA_00912 at 45.757 kb on - strand, within BACOVA_00912 at 45.757 kb on - strand, within BACOVA_00912 at 45.782 kb on - strand, within BACOVA_00912 at 45.883 kb on + strand, within BACOVA_00912 at 45.884 kb on - strand, within BACOVA_00912 at 45.903 kb on + strand, within BACOVA_00912 at 45.904 kb on - strand, within BACOVA_00912 at 45.917 kb on + strand, within BACOVA_00912 at 45.979 kb on - strand, within BACOVA_00912 at 45.989 kb on + strand, within BACOVA_00912 at 46.006 kb on + strand, within BACOVA_00912 at 46.035 kb on + strand, within BACOVA_00912 at 46.106 kb on + strand, within BACOVA_00912 at 46.127 kb on + strand, within BACOVA_00912 at 46.137 kb on + strand, within BACOVA_00912 at 46.137 kb on + strand, within BACOVA_00912 at 46.138 kb on - strand, within BACOVA_00912 at 46.178 kb on + strand, within BACOVA_00912 at 46.178 kb on + strand, within BACOVA_00912 at 46.218 kb on + strand, within BACOVA_00912 at 46.221 kb on - strand, within BACOVA_00912 at 46.246 kb on - strand, within BACOVA_00912 at 46.268 kb on + strand, within BACOVA_00912 at 46.322 kb on + strand, within BACOVA_00912 at 46.346 kb on + strand, within BACOVA_00912 at 46.430 kb on + strand, within BACOVA_00912 at 46.469 kb on + strand at 46.470 kb on - strand at 46.470 kb on - strand at 46.473 kb on + strand at 46.503 kb on - strand at 46.504 kb on + strand at 46.504 kb on + strand at 46.514 kb on - strand at 46.514 kb on - strand at 46.514 kb on - strand at 46.567 kb on + strand at 46.572 kb on - strand at 46.572 kb on - strand at 46.625 kb on + strand at 46.640 kb on + strand at 46.640 kb on + strand at 46.640 kb on + strand at 46.641 kb on - strand at 46.641 kb on - strand at 46.641 kb on - strand at 46.644 kb on + strand at 46.645 kb on - strand at 46.652 kb on - strand at 46.660 kb on - strand at 46.660 kb on - strand at 46.663 kb on - strand at 46.674 kb on + strand at 46.674 kb on + strand at 46.674 kb on + strand at 46.675 kb on - strand at 46.726 kb on - strand at 46.742 kb on - strand at 46.747 kb on + strand at 46.747 kb on + strand at 46.747 kb on + strand at 46.748 kb on - strand at 46.751 kb on + strand at 46.752 kb on - strand at 46.755 kb on + strand at 46.755 kb on + strand at 46.755 kb on + strand at 46.756 kb on - strand at 46.756 kb on - strand at 46.756 kb on - strand at 46.907 kb on + strand, within BACOVA_00913 at 46.963 kb on + strand, within BACOVA_00913 at 46.963 kb on + strand, within BACOVA_00913 at 46.963 kb on + strand, within BACOVA_00913 at 46.989 kb on + strand, within BACOVA_00913 at 46.994 kb on + strand, within BACOVA_00913 at 46.995 kb on - strand, within BACOVA_00913 at 47.023 kb on - strand, within BACOVA_00913 at 47.024 kb on + strand, within BACOVA_00913 at 47.024 kb on + strand, within BACOVA_00913 at 47.025 kb on - strand, within BACOVA_00913 at 47.026 kb on + strand, within BACOVA_00913 at 47.026 kb on + strand, within BACOVA_00913 at 47.026 kb on + strand, within BACOVA_00913 at 47.026 kb on + strand, within BACOVA_00913 at 47.027 kb on - strand, within BACOVA_00913 at 47.027 kb on - strand, within BACOVA_00913 at 47.027 kb on - strand, within BACOVA_00913 at 47.132 kb on - strand, within BACOVA_00913 at 47.132 kb on - strand, within BACOVA_00913 at 47.136 kb on + strand, within BACOVA_00913 at 47.136 kb on + strand, within BACOVA_00913 at 47.136 kb on + strand, within BACOVA_00913 at 47.137 kb on - strand, within BACOVA_00913 at 47.145 kb on - strand, within BACOVA_00913 at 47.148 kb on - strand, within BACOVA_00913 at 47.148 kb on - strand, within BACOVA_00913 at 47.279 kb on + strand, within BACOVA_00913 at 47.279 kb on + strand, within BACOVA_00913 at 47.279 kb on + strand, within BACOVA_00913 at 47.337 kb on + strand, within BACOVA_00913 at 47.415 kb on + strand, within BACOVA_00913 at 47.416 kb on - strand, within BACOVA_00913 at 47.456 kb on - strand, within BACOVA_00913 at 47.456 kb on - strand, within BACOVA_00913 at 47.479 kb on - strand, within BACOVA_00913 at 47.545 kb on + strand, within BACOVA_00913 at 47.545 kb on + strand, within BACOVA_00913 at 47.603 kb on - strand, within BACOVA_00913 at 47.628 kb on + strand, within BACOVA_00913 at 47.630 kb on + strand, within BACOVA_00913 at 47.631 kb on - strand, within BACOVA_00913 at 47.695 kb on + strand, within BACOVA_00913 at 47.715 kb on + strand, within BACOVA_00913 at 47.774 kb on + strand, within BACOVA_00913 at 47.774 kb on + strand, within BACOVA_00913 at 47.775 kb on - strand, within BACOVA_00913 at 47.775 kb on - strand, within BACOVA_00913 at 47.775 kb on - strand, within BACOVA_00913 at 47.780 kb on - strand, within BACOVA_00913 at 47.790 kb on + strand, within BACOVA_00913 at 47.810 kb on - strand, within BACOVA_00913 at 47.847 kb on - strand, within BACOVA_00913 at 47.850 kb on + strand, within BACOVA_00913 at 47.850 kb on + strand, within BACOVA_00913 at 47.851 kb on - strand, within BACOVA_00913 at 47.851 kb on - strand, within BACOVA_00913 at 47.960 kb on - strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.972 kb on + strand, within BACOVA_00913 at 47.978 kb on + strand, within BACOVA_00913 at 47.978 kb on + strand, within BACOVA_00913 at 48.018 kb on - strand, within BACOVA_00913 at 48.051 kb on - strand, within BACOVA_00913 at 48.073 kb on - strand, within BACOVA_00913 at 48.136 kb on + strand at 48.149 kb on - strand at 48.151 kb on - strand at 48.185 kb on + strand at 48.185 kb on + strand at 48.242 kb on - strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.343 kb on + strand at 48.344 kb on - strand at 48.347 kb on + strand at 48.347 kb on + strand at 48.347 kb on + strand at 48.348 kb on - strand at 48.370 kb on - strand, within BACOVA_00914 at 48.388 kb on + strand, within BACOVA_00914 at 48.389 kb on - strand, within BACOVA_00914 at 48.401 kb on + strand, within BACOVA_00914 at 48.418 kb on + strand, within BACOVA_00914 at 48.419 kb on - strand, within BACOVA_00914 at 48.429 kb on - strand, within BACOVA_00914 at 48.434 kb on - strand, within BACOVA_00914 at 48.434 kb on - strand, within BACOVA_00914 at 48.485 kb on - strand, within BACOVA_00914 at 48.513 kb on + strand, within BACOVA_00914 at 48.542 kb on + strand, within BACOVA_00914 at 48.543 kb on - strand, within BACOVA_00914 at 48.543 kb on - strand, within BACOVA_00914 at 48.588 kb on + strand, within BACOVA_00914 at 48.588 kb on + strand, within BACOVA_00914 at 48.589 kb on - strand, within BACOVA_00914 at 48.628 kb on - strand, within BACOVA_00914 at 48.674 kb on - strand, within BACOVA_00914 at 48.674 kb on - strand, within BACOVA_00914 at 48.703 kb on - strand, within BACOVA_00914 at 48.704 kb on + strand, within BACOVA_00914 at 48.704 kb on + strand, within BACOVA_00914 at 48.714 kb on + strand, within BACOVA_00914 at 48.714 kb on + strand, within BACOVA_00914 at 48.716 kb on + strand, within BACOVA_00914 at 48.716 kb on + strand, within BACOVA_00914 at 48.716 kb on + strand, within BACOVA_00914 at 48.717 kb on - strand, within BACOVA_00914 at 48.717 kb on - strand, within BACOVA_00914 at 48.742 kb on - strand, within BACOVA_00914 at 48.765 kb on + strand, within BACOVA_00914 at 48.765 kb on + strand, within BACOVA_00914 at 48.766 kb on - strand, within BACOVA_00914 at 48.769 kb on + strand, within BACOVA_00914 at 48.769 kb on + strand, within BACOVA_00914 at 48.770 kb on - strand, within BACOVA_00914 at 48.887 kb on + strand, within BACOVA_00914 at 48.889 kb on + strand, within BACOVA_00914 at 48.889 kb on + strand, within BACOVA_00914 at 48.895 kb on + strand, within BACOVA_00914 at 48.989 kb on - strand, within BACOVA_00914 at 49.075 kb on + strand, within BACOVA_00914 at 49.076 kb on - strand, within BACOVA_00914 at 49.137 kb on + strand, within BACOVA_00914 at 49.170 kb on + strand, within BACOVA_00914 at 49.170 kb on + strand, within BACOVA_00914 at 49.171 kb on - strand, within BACOVA_00914 at 49.205 kb on + strand, within BACOVA_00914 at 49.206 kb on - strand, within BACOVA_00914
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C) remove 45,681 - BACOVA_00912 0.26 -0.1 45,686 - BACOVA_00912 0.26 +0.3 45,686 - BACOVA_00912 0.26 +0.5 45,686 - BACOVA_00912 0.26 -0.3 45,715 + BACOVA_00912 0.28 -1.5 45,716 - BACOVA_00912 0.28 +1.1 45,756 + BACOVA_00912 0.32 +0.7 45,757 - BACOVA_00912 0.32 -0.7 45,757 - BACOVA_00912 0.32 -0.3 45,782 - BACOVA_00912 0.34 +1.0 45,883 + BACOVA_00912 0.42 -0.9 45,884 - BACOVA_00912 0.42 -0.1 45,903 + BACOVA_00912 0.44 -0.3 45,904 - BACOVA_00912 0.44 -0.8 45,917 + BACOVA_00912 0.45 -0.2 45,979 - BACOVA_00912 0.50 +1.1 45,989 + BACOVA_00912 0.51 -0.8 46,006 + BACOVA_00912 0.52 -0.5 46,035 + BACOVA_00912 0.55 -1.9 46,106 + BACOVA_00912 0.60 -1.2 46,127 + BACOVA_00912 0.62 +0.3 46,137 + BACOVA_00912 0.63 -0.7 46,137 + BACOVA_00912 0.63 +0.8 46,138 - BACOVA_00912 0.63 -1.5 46,178 + BACOVA_00912 0.66 +0.1 46,178 + BACOVA_00912 0.66 -0.8 46,218 + BACOVA_00912 0.70 -1.5 46,221 - BACOVA_00912 0.70 +0.5 46,246 - BACOVA_00912 0.72 +0.1 46,268 + BACOVA_00912 0.74 -0.4 46,322 + BACOVA_00912 0.78 -1.9 46,346 + BACOVA_00912 0.80 -0.1 46,430 + BACOVA_00912 0.87 -0.4 46,469 + +1.2 46,470 - -1.0 46,470 - -0.2 46,473 + +1.6 46,503 - +0.5 46,504 + -1.3 46,504 + -0.1 46,514 - -0.3 46,514 - +1.4 46,514 - -0.7 46,567 + +0.0 46,572 - +1.5 46,572 - +0.7 46,625 + -0.1 46,640 + -0.6 46,640 + +0.2 46,640 + -0.5 46,641 - +0.5 46,641 - -0.2 46,641 - +0.5 46,644 + +0.0 46,645 - +1.6 46,652 - +1.5 46,660 - -0.8 46,660 - +1.5 46,663 - -1.7 46,674 + +1.0 46,674 + -2.3 46,674 + -0.4 46,675 - +0.8 46,726 - +0.4 46,742 - +1.0 46,747 + -0.1 46,747 + -1.0 46,747 + +0.7 46,748 - -0.3 46,751 + +0.3 46,752 - +1.7 46,755 + +0.8 46,755 + -0.5 46,755 + +1.5 46,756 - -0.0 46,756 - -1.1 46,756 - +0.9 46,907 + BACOVA_00913 0.15 -0.6 46,963 + BACOVA_00913 0.18 -0.7 46,963 + BACOVA_00913 0.18 -1.6 46,963 + BACOVA_00913 0.18 +0.6 46,989 + BACOVA_00913 0.20 -0.4 46,994 + BACOVA_00913 0.20 +0.1 46,995 - BACOVA_00913 0.20 +0.2 47,023 - BACOVA_00913 0.22 +0.5 47,024 + BACOVA_00913 0.22 +0.5 47,024 + BACOVA_00913 0.22 -0.7 47,025 - BACOVA_00913 0.22 +0.2 47,026 + BACOVA_00913 0.22 +1.7 47,026 + BACOVA_00913 0.22 -1.4 47,026 + BACOVA_00913 0.22 -1.3 47,026 + BACOVA_00913 0.22 -0.8 47,027 - BACOVA_00913 0.22 -1.5 47,027 - BACOVA_00913 0.22 +2.2 47,027 - BACOVA_00913 0.22 +0.6 47,132 - BACOVA_00913 0.29 +0.0 47,132 - BACOVA_00913 0.29 -1.2 47,136 + BACOVA_00913 0.29 +0.6 47,136 + BACOVA_00913 0.29 -0.2 47,136 + BACOVA_00913 0.29 +1.3 47,137 - BACOVA_00913 0.29 -0.5 47,145 - BACOVA_00913 0.30 +0.0 47,148 - BACOVA_00913 0.30 -0.4 47,148 - BACOVA_00913 0.30 +0.1 47,279 + BACOVA_00913 0.38 +0.5 47,279 + BACOVA_00913 0.38 -1.1 47,279 + BACOVA_00913 0.38 -0.1 47,337 + BACOVA_00913 0.42 +1.6 47,415 + BACOVA_00913 0.47 +0.0 47,416 - BACOVA_00913 0.47 +1.9 47,456 - BACOVA_00913 0.50 +0.5 47,456 - BACOVA_00913 0.50 -0.9 47,479 - BACOVA_00913 0.51 -1.2 47,545 + BACOVA_00913 0.55 +1.0 47,545 + BACOVA_00913 0.55 -0.0 47,603 - BACOVA_00913 0.59 +0.3 47,628 + BACOVA_00913 0.61 -0.5 47,630 + BACOVA_00913 0.61 +1.0 47,631 - BACOVA_00913 0.61 +1.6 47,695 + BACOVA_00913 0.65 -0.1 47,715 + BACOVA_00913 0.66 -0.3 47,774 + BACOVA_00913 0.70 +0.7 47,774 + BACOVA_00913 0.70 +0.0 47,775 - BACOVA_00913 0.70 -0.3 47,775 - BACOVA_00913 0.70 -0.9 47,775 - BACOVA_00913 0.70 -1.6 47,780 - BACOVA_00913 0.70 -1.5 47,790 + BACOVA_00913 0.71 -0.1 47,810 - BACOVA_00913 0.72 -1.0 47,847 - BACOVA_00913 0.75 -1.3 47,850 + BACOVA_00913 0.75 -0.3 47,850 + BACOVA_00913 0.75 +0.4 47,851 - BACOVA_00913 0.75 +1.3 47,851 - BACOVA_00913 0.75 +1.7 47,960 - BACOVA_00913 0.82 -0.3 47,972 + BACOVA_00913 0.83 -0.5 47,972 + BACOVA_00913 0.83 -0.2 47,972 + BACOVA_00913 0.83 +0.2 47,972 + BACOVA_00913 0.83 -1.0 47,972 + BACOVA_00913 0.83 -0.3 47,972 + BACOVA_00913 0.83 -1.3 47,978 + BACOVA_00913 0.83 +2.0 47,978 + BACOVA_00913 0.83 +1.1 48,018 - BACOVA_00913 0.86 -0.5 48,051 - BACOVA_00913 0.88 -0.2 48,073 - BACOVA_00913 0.89 +0.3 48,136 + -1.8 48,149 - +0.6 48,151 - -1.3 48,185 + +1.6 48,185 + -1.9 48,242 - +0.6 48,343 + +0.5 48,343 + -0.2 48,343 + +0.0 48,343 + +1.7 48,343 + -0.3 48,344 - -1.0 48,347 + -0.1 48,347 + +1.3 48,347 + +1.0 48,348 - +2.8 48,370 - BACOVA_00914 0.10 +0.0 48,388 + BACOVA_00914 0.12 +0.2 48,389 - BACOVA_00914 0.12 -0.4 48,401 + BACOVA_00914 0.13 -0.3 48,418 + BACOVA_00914 0.15 +0.9 48,419 - BACOVA_00914 0.15 +1.0 48,429 - BACOVA_00914 0.16 -0.3 48,434 - BACOVA_00914 0.16 +0.1 48,434 - BACOVA_00914 0.16 +0.5 48,485 - BACOVA_00914 0.21 -0.5 48,513 + BACOVA_00914 0.23 -0.1 48,542 + BACOVA_00914 0.26 -0.1 48,543 - BACOVA_00914 0.26 -0.5 48,543 - BACOVA_00914 0.26 -0.7 48,588 + BACOVA_00914 0.30 -0.2 48,588 + BACOVA_00914 0.30 -0.2 48,589 - BACOVA_00914 0.30 +0.6 48,628 - BACOVA_00914 0.34 -0.8 48,674 - BACOVA_00914 0.38 +0.3 48,674 - BACOVA_00914 0.38 +0.4 48,703 - BACOVA_00914 0.41 -0.9 48,704 + BACOVA_00914 0.41 +0.1 48,704 + BACOVA_00914 0.41 +0.8 48,714 + BACOVA_00914 0.42 -0.9 48,714 + BACOVA_00914 0.42 -0.6 48,716 + BACOVA_00914 0.42 -0.6 48,716 + BACOVA_00914 0.42 +0.8 48,716 + BACOVA_00914 0.42 -0.5 48,717 - BACOVA_00914 0.42 +1.2 48,717 - BACOVA_00914 0.42 -2.1 48,742 - BACOVA_00914 0.44 -1.2 48,765 + BACOVA_00914 0.46 +0.1 48,765 + BACOVA_00914 0.46 -0.8 48,766 - BACOVA_00914 0.46 +0.5 48,769 + BACOVA_00914 0.47 -0.2 48,769 + BACOVA_00914 0.47 -1.5 48,770 - BACOVA_00914 0.47 -0.5 48,887 + BACOVA_00914 0.57 -0.6 48,889 + BACOVA_00914 0.58 +0.1 48,889 + BACOVA_00914 0.58 -0.2 48,895 + BACOVA_00914 0.58 +1.7 48,989 - BACOVA_00914 0.67 +0.1 49,075 + BACOVA_00914 0.74 +1.0 49,076 - BACOVA_00914 0.75 +1.7 49,137 + BACOVA_00914 0.80 +0.0 49,170 + BACOVA_00914 0.83 -1.5 49,170 + BACOVA_00914 0.83 +0.2 49,171 - BACOVA_00914 0.83 -1.1 49,205 + BACOVA_00914 0.86 +0.9 49,206 - BACOVA_00914 0.86 -0.3
Or see this region's nucleotide sequence