Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00128

Experiment: Xylan from Beechwood 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00126 and BACOVA_00127 are separated by 21 nucleotidesBACOVA_00127 and BACOVA_00128 are separated by 3 nucleotidesBACOVA_00128 and BACOVA_00129 are separated by 26 nucleotidesBACOVA_00129 and BACOVA_00130 are separated by 15 nucleotides BACOVA_00126: BACOVA_00126 - tetratricopeptide repeat protein, at 172,118 to 173,584 _00126 BACOVA_00127: BACOVA_00127 - hypothetical protein, at 173,606 to 174,550 _00127 BACOVA_00128: BACOVA_00128 - TonB-dependent receptor, at 174,554 to 175,369 _00128 BACOVA_00129: BACOVA_00129 - hypothetical protein, at 175,396 to 176,049 _00129 BACOVA_00130: BACOVA_00130 - hypothetical protein, at 176,065 to 176,670 _00130 Position (kb) 174 175 176Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 173.561 kb on + strandat 173.594 kb on + strandat 173.595 kb on - strandat 173.604 kb on + strandat 173.607 kb on + strandat 173.607 kb on + strandat 173.608 kb on - strandat 173.629 kb on + strandat 173.669 kb on + strandat 173.751 kb on + strand, within BACOVA_00127at 173.772 kb on + strand, within BACOVA_00127at 173.776 kb on + strand, within BACOVA_00127at 173.776 kb on + strand, within BACOVA_00127at 173.777 kb on - strand, within BACOVA_00127at 173.777 kb on - strand, within BACOVA_00127at 173.781 kb on + strand, within BACOVA_00127at 173.782 kb on - strand, within BACOVA_00127at 173.790 kb on + strand, within BACOVA_00127at 173.800 kb on - strand, within BACOVA_00127at 173.806 kb on + strand, within BACOVA_00127at 173.807 kb on - strand, within BACOVA_00127at 173.808 kb on + strand, within BACOVA_00127at 173.809 kb on - strand, within BACOVA_00127at 173.887 kb on + strand, within BACOVA_00127at 173.888 kb on - strand, within BACOVA_00127at 173.913 kb on - strand, within BACOVA_00127at 173.952 kb on + strand, within BACOVA_00127at 173.952 kb on + strand, within BACOVA_00127at 173.957 kb on + strand, within BACOVA_00127at 173.992 kb on + strand, within BACOVA_00127at 174.042 kb on - strand, within BACOVA_00127at 174.103 kb on + strand, within BACOVA_00127at 174.155 kb on + strand, within BACOVA_00127at 174.156 kb on - strand, within BACOVA_00127at 174.272 kb on - strand, within BACOVA_00127at 174.320 kb on + strand, within BACOVA_00127at 174.321 kb on - strand, within BACOVA_00127at 174.326 kb on + strand, within BACOVA_00127at 174.395 kb on + strand, within BACOVA_00127at 174.395 kb on + strand, within BACOVA_00127at 174.407 kb on + strand, within BACOVA_00127at 174.440 kb on - strand, within BACOVA_00127at 174.464 kb on - strandat 174.491 kb on - strandat 174.525 kb on - strandat 174.533 kb on - strandat 174.561 kb on - strandat 174.565 kb on + strandat 174.566 kb on - strandat 174.566 kb on - strandat 174.597 kb on - strandat 174.673 kb on - strand, within BACOVA_00128at 174.709 kb on + strand, within BACOVA_00128at 174.726 kb on - strand, within BACOVA_00128at 174.737 kb on + strand, within BACOVA_00128at 174.738 kb on - strand, within BACOVA_00128at 174.738 kb on - strand, within BACOVA_00128at 174.739 kb on + strand, within BACOVA_00128at 174.805 kb on - strand, within BACOVA_00128at 174.852 kb on - strand, within BACOVA_00128at 174.856 kb on + strand, within BACOVA_00128at 174.905 kb on - strand, within BACOVA_00128at 174.916 kb on + strand, within BACOVA_00128at 174.922 kb on + strand, within BACOVA_00128at 174.968 kb on + strand, within BACOVA_00128at 174.969 kb on - strand, within BACOVA_00128at 174.969 kb on - strand, within BACOVA_00128at 175.061 kb on - strand, within BACOVA_00128at 175.153 kb on + strand, within BACOVA_00128at 175.153 kb on + strand, within BACOVA_00128at 175.154 kb on - strand, within BACOVA_00128at 175.154 kb on - strand, within BACOVA_00128at 175.158 kb on - strand, within BACOVA_00128at 175.207 kb on + strand, within BACOVA_00128at 175.217 kb on - strand, within BACOVA_00128at 175.233 kb on - strand, within BACOVA_00128at 175.253 kb on - strand, within BACOVA_00128at 175.261 kb on + strand, within BACOVA_00128at 175.261 kb on + strand, within BACOVA_00128at 175.291 kb on + strandat 175.358 kb on + strandat 175.372 kb on + strandat 175.392 kb on + strandat 175.392 kb on + strandat 175.401 kb on + strandat 175.440 kb on - strandat 175.488 kb on - strand, within BACOVA_00129at 175.491 kb on + strand, within BACOVA_00129at 175.491 kb on + strand, within BACOVA_00129at 175.492 kb on - strand, within BACOVA_00129at 175.492 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.501 kb on - strand, within BACOVA_00129at 175.540 kb on - strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.541 kb on + strand, within BACOVA_00129at 175.542 kb on - strand, within BACOVA_00129at 175.542 kb on - strand, within BACOVA_00129at 175.597 kb on + strand, within BACOVA_00129at 175.617 kb on + strand, within BACOVA_00129at 175.638 kb on + strand, within BACOVA_00129at 175.639 kb on - strand, within BACOVA_00129at 175.639 kb on - strand, within BACOVA_00129at 175.669 kb on + strand, within BACOVA_00129at 175.752 kb on + strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.753 kb on - strand, within BACOVA_00129at 175.754 kb on + strand, within BACOVA_00129at 175.755 kb on - strand, within BACOVA_00129at 175.763 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.767 kb on + strand, within BACOVA_00129at 175.768 kb on - strand, within BACOVA_00129at 175.787 kb on + strand, within BACOVA_00129at 175.798 kb on - strand, within BACOVA_00129at 175.814 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.819 kb on - strand, within BACOVA_00129at 175.842 kb on + strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.843 kb on - strand, within BACOVA_00129at 175.861 kb on + strand, within BACOVA_00129at 175.863 kb on + strand, within BACOVA_00129at 175.864 kb on - strand, within BACOVA_00129at 175.876 kb on - strand, within BACOVA_00129at 175.888 kb on + strand, within BACOVA_00129at 175.889 kb on - strand, within BACOVA_00129at 175.971 kb on + strand, within BACOVA_00129at 175.972 kb on - strand, within BACOVA_00129at 176.052 kb on + strandat 176.094 kb on + strandat 176.190 kb on + strand, within BACOVA_00130at 176.190 kb on + strand, within BACOVA_00130at 176.191 kb on - strand, within BACOVA_00130at 176.212 kb on - strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.220 kb on + strand, within BACOVA_00130at 176.235 kb on + strand, within BACOVA_00130at 176.265 kb on + strand, within BACOVA_00130at 176.335 kb on - strand, within BACOVA_00130at 176.338 kb on + strand, within BACOVA_00130at 176.339 kb on - strand, within BACOVA_00130at 176.361 kb on + strand, within BACOVA_00130

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from Beechwood 2.5 mg/mL (C)
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173,561 + -0.8
173,594 + -0.5
173,595 - -1.4
173,604 + -2.7
173,607 + -0.0
173,607 + +0.5
173,608 - -3.5
173,629 + -0.3
173,669 + +0.7
173,751 + BACOVA_00127 0.15 +0.1
173,772 + BACOVA_00127 0.18 -0.3
173,776 + BACOVA_00127 0.18 +0.8
173,776 + BACOVA_00127 0.18 +1.2
173,777 - BACOVA_00127 0.18 -1.8
173,777 - BACOVA_00127 0.18 -2.3
173,781 + BACOVA_00127 0.19 -0.0
173,782 - BACOVA_00127 0.19 -2.7
173,790 + BACOVA_00127 0.19 -1.7
173,800 - BACOVA_00127 0.21 -2.4
173,806 + BACOVA_00127 0.21 +0.2
173,807 - BACOVA_00127 0.21 -4.0
173,808 + BACOVA_00127 0.21 +0.6
173,809 - BACOVA_00127 0.21 -2.7
173,887 + BACOVA_00127 0.30 +0.3
173,888 - BACOVA_00127 0.30 -1.4
173,913 - BACOVA_00127 0.32 -2.5
173,952 + BACOVA_00127 0.37 -0.3
173,952 + BACOVA_00127 0.37 +0.4
173,957 + BACOVA_00127 0.37 +1.4
173,992 + BACOVA_00127 0.41 -0.3
174,042 - BACOVA_00127 0.46 -2.2
174,103 + BACOVA_00127 0.53 +0.3
174,155 + BACOVA_00127 0.58 -0.6
174,156 - BACOVA_00127 0.58 -2.3
174,272 - BACOVA_00127 0.70 -2.8
174,320 + BACOVA_00127 0.76 +0.7
174,321 - BACOVA_00127 0.76 -1.4
174,326 + BACOVA_00127 0.76 +0.6
174,395 + BACOVA_00127 0.83 +0.9
174,395 + BACOVA_00127 0.83 +0.3
174,407 + BACOVA_00127 0.85 -0.3
174,440 - BACOVA_00127 0.88 -3.4
174,464 - -2.2
174,491 - +0.4
174,525 - -0.3
174,533 - -0.2
174,561 - -1.9
174,565 + +0.4
174,566 - +0.4
174,566 - -1.9
174,597 - -2.3
174,673 - BACOVA_00128 0.15 -1.0
174,709 + BACOVA_00128 0.19 -1.9
174,726 - BACOVA_00128 0.21 -2.7
174,737 + BACOVA_00128 0.22 +0.2
174,738 - BACOVA_00128 0.23 -2.8
174,738 - BACOVA_00128 0.23 -2.8
174,739 + BACOVA_00128 0.23 +0.4
174,805 - BACOVA_00128 0.31 -1.8
174,852 - BACOVA_00128 0.37 -1.0
174,856 + BACOVA_00128 0.37 -1.7
174,905 - BACOVA_00128 0.43 -2.0
174,916 + BACOVA_00128 0.44 +0.4
174,922 + BACOVA_00128 0.45 -1.5
174,968 + BACOVA_00128 0.51 +0.7
174,969 - BACOVA_00128 0.51 -0.2
174,969 - BACOVA_00128 0.51 -3.0
175,061 - BACOVA_00128 0.62 -1.1
175,153 + BACOVA_00128 0.73 +0.1
175,153 + BACOVA_00128 0.73 -2.7
175,154 - BACOVA_00128 0.74 -1.1
175,154 - BACOVA_00128 0.74 -3.2
175,158 - BACOVA_00128 0.74 -1.6
175,207 + BACOVA_00128 0.80 +0.2
175,217 - BACOVA_00128 0.81 -2.1
175,233 - BACOVA_00128 0.83 -2.3
175,253 - BACOVA_00128 0.86 -2.3
175,261 + BACOVA_00128 0.87 -0.3
175,261 + BACOVA_00128 0.87 -0.3
175,291 + +1.0
175,358 + -0.6
175,372 + +0.4
175,392 + +0.6
175,392 + -0.0
175,401 + -0.8
175,440 - -2.2
175,488 - BACOVA_00129 0.14 -1.4
175,491 + BACOVA_00129 0.15 +0.2
175,491 + BACOVA_00129 0.15 -0.5
175,492 - BACOVA_00129 0.15 -1.7
175,492 - BACOVA_00129 0.15 -1.4
175,501 - BACOVA_00129 0.16 -1.6
175,501 - BACOVA_00129 0.16 -2.7
175,501 - BACOVA_00129 0.16 -2.0
175,501 - BACOVA_00129 0.16 -1.8
175,540 - BACOVA_00129 0.22 -2.0
175,541 + BACOVA_00129 0.22 +0.7
175,541 + BACOVA_00129 0.22 -0.3
175,541 + BACOVA_00129 0.22 -0.3
175,541 + BACOVA_00129 0.22 -0.8
175,542 - BACOVA_00129 0.22 -3.0
175,542 - BACOVA_00129 0.22 -0.8
175,597 + BACOVA_00129 0.31 -0.2
175,617 + BACOVA_00129 0.34 +0.0
175,638 + BACOVA_00129 0.37 -2.4
175,639 - BACOVA_00129 0.37 -3.3
175,639 - BACOVA_00129 0.37 -3.3
175,669 + BACOVA_00129 0.42 +0.2
175,752 + BACOVA_00129 0.54 -0.2
175,753 - BACOVA_00129 0.55 -1.9
175,753 - BACOVA_00129 0.55 -2.6
175,754 + BACOVA_00129 0.55 -0.5
175,755 - BACOVA_00129 0.55 -0.2
175,763 + BACOVA_00129 0.56 -0.6
175,767 + BACOVA_00129 0.57 -0.3
175,767 + BACOVA_00129 0.57 -0.5
175,768 - BACOVA_00129 0.57 -1.4
175,787 + BACOVA_00129 0.60 +0.4
175,798 - BACOVA_00129 0.61 -2.8
175,814 - BACOVA_00129 0.64 -0.2
175,819 - BACOVA_00129 0.65 -1.1
175,819 - BACOVA_00129 0.65 -1.3
175,819 - BACOVA_00129 0.65 -1.6
175,842 + BACOVA_00129 0.68 +1.0
175,843 - BACOVA_00129 0.68 -0.1
175,843 - BACOVA_00129 0.68 -3.6
175,861 + BACOVA_00129 0.71 +0.4
175,863 + BACOVA_00129 0.71 -0.9
175,864 - BACOVA_00129 0.72 -0.9
175,876 - BACOVA_00129 0.73 -1.2
175,888 + BACOVA_00129 0.75 +1.3
175,889 - BACOVA_00129 0.75 -1.4
175,971 + BACOVA_00129 0.88 +1.6
175,972 - BACOVA_00129 0.88 -1.5
176,052 + +1.4
176,094 + +0.2
176,190 + BACOVA_00130 0.21 -0.4
176,190 + BACOVA_00130 0.21 -0.9
176,191 - BACOVA_00130 0.21 -0.2
176,212 - BACOVA_00130 0.24 -2.6
176,220 + BACOVA_00130 0.26 -0.1
176,220 + BACOVA_00130 0.26 +0.2
176,235 + BACOVA_00130 0.28 -0.7
176,265 + BACOVA_00130 0.33 -1.1
176,335 - BACOVA_00130 0.45 -2.1
176,338 + BACOVA_00130 0.45 +1.8
176,339 - BACOVA_00130 0.45 +0.4
176,361 + BACOVA_00130 0.49 -0.7

Or see this region's nucleotide sequence