Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF995 and GFF996 are separated by 8 nucleotides GFF996 and GFF997 are separated by 130 nucleotides GFF997 and GFF998 are separated by 122 nucleotides
GFF995 - AMP-dependent synthetase/ligase in alkane synthesis cluster, at 733,723 to 735,237
GFF995
GFF996 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 735,246 to 736,055
GFF996
GFF997 - MaoC-related acyl dehydratase, at 736,186 to 736,668
GFF997
GFF998 - putative thiolase, at 736,791 to 737,960
GFF998
Position (kb) 736
737 Strain fitness (log2 ratio) -2
-1
0
1 at 735.460 kb on + strand, within GFF996 at 735.461 kb on - strand, within GFF996 at 735.662 kb on - strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.691 kb on + strand, within GFF996 at 735.692 kb on - strand, within GFF996 at 735.872 kb on - strand, within GFF996 at 736.078 kb on - strand at 736.316 kb on - strand, within GFF997 at 736.316 kb on - strand, within GFF997 at 736.406 kb on - strand, within GFF997 at 736.406 kb on - strand, within GFF997 at 736.475 kb on + strand, within GFF997 at 736.476 kb on - strand, within GFF997 at 736.564 kb on + strand, within GFF997 at 736.744 kb on + strand at 736.744 kb on + strand at 736.744 kb on + strand at 736.745 kb on - strand at 736.791 kb on - strand at 737.021 kb on + strand, within GFF998 at 737.021 kb on + strand, within GFF998 at 737.133 kb on + strand, within GFF998 at 737.274 kb on + strand, within GFF998 at 737.423 kb on + strand, within GFF998 at 737.652 kb on + strand, within GFF998
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 735,460 + GFF996 0.26 -0.2 735,461 - GFF996 0.27 +0.2 735,662 - GFF996 0.51 -0.5 735,691 + GFF996 0.55 +0.0 735,691 + GFF996 0.55 +0.2 735,691 + GFF996 0.55 -0.3 735,692 - GFF996 0.55 -0.0 735,872 - GFF996 0.77 +0.5 736,078 - -0.0 736,316 - GFF997 0.27 -1.1 736,316 - GFF997 0.27 -0.6 736,406 - GFF997 0.46 -2.5 736,406 - GFF997 0.46 +0.2 736,475 + GFF997 0.60 +0.5 736,476 - GFF997 0.60 -0.3 736,564 + GFF997 0.78 -0.8 736,744 + -0.1 736,744 + +0.0 736,744 + -0.2 736,745 - +0.6 736,791 - -0.3 737,021 + GFF998 0.20 -0.5 737,021 + GFF998 0.20 -0.8 737,133 + GFF998 0.29 +0.7 737,274 + GFF998 0.41 +0.2 737,423 + GFF998 0.54 +0.3 737,652 + GFF998 0.74 +0.2
Or see this region's nucleotide sequence