Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF988 and GFF989 overlap by 4 nucleotides GFF989 and GFF990 overlap by 4 nucleotides GFF990 and GFF991 overlap by 4 nucleotides GFF991 and GFF992 are separated by 24 nucleotides
GFF988 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 728,117 to 729,262
GFF988
GFF989 - metallo-beta-lactamase family protein, at 729,259 to 730,326
GFF989
GFF990 - Phenylacetic acid degradation-related protein, at 730,323 to 730,799
GFF990
GFF991 - hypothetical protein, at 730,796 to 731,230
GFF991
GFF992 - Citronellol and citronellal dehydrogenase, at 731,255 to 732,136
GFF992
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1 at 728.271 kb on - strand, within GFF988 at 728.281 kb on - strand, within GFF988 at 728.285 kb on + strand, within GFF988 at 728.825 kb on + strand, within GFF988 at 728.866 kb on - strand, within GFF988 at 728.918 kb on + strand, within GFF988 at 728.919 kb on - strand, within GFF988 at 729.122 kb on + strand, within GFF988 at 729.122 kb on + strand, within GFF988 at 729.123 kb on - strand, within GFF988 at 729.365 kb on - strand at 729.647 kb on - strand, within GFF989 at 729.726 kb on + strand, within GFF989 at 730.142 kb on - strand, within GFF989 at 730.172 kb on - strand, within GFF989 at 730.396 kb on - strand, within GFF990 at 730.573 kb on + strand, within GFF990 at 730.609 kb on - strand, within GFF990 at 730.660 kb on - strand, within GFF990 at 730.701 kb on + strand, within GFF990 at 730.746 kb on + strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.747 kb on - strand, within GFF990 at 730.755 kb on - strand at 730.772 kb on - strand at 731.019 kb on - strand, within GFF991 at 731.079 kb on - strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.108 kb on + strand, within GFF991 at 731.109 kb on - strand, within GFF991 at 731.266 kb on + strand at 731.266 kb on + strand at 731.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 728,271 - GFF988 0.13 -0.0 728,281 - GFF988 0.14 -1.3 728,285 + GFF988 0.15 -0.1 728,825 + GFF988 0.62 +0.4 728,866 - GFF988 0.65 -0.0 728,918 + GFF988 0.70 +0.5 728,919 - GFF988 0.70 -0.4 729,122 + GFF988 0.88 +0.5 729,122 + GFF988 0.88 -1.8 729,123 - GFF988 0.88 -0.5 729,365 - +0.4 729,647 - GFF989 0.36 +0.1 729,726 + GFF989 0.44 +0.2 730,142 - GFF989 0.83 -0.9 730,172 - GFF989 0.85 +0.1 730,396 - GFF990 0.15 -0.2 730,573 + GFF990 0.52 +0.3 730,609 - GFF990 0.60 -0.4 730,660 - GFF990 0.71 +0.6 730,701 + GFF990 0.79 -0.8 730,746 + GFF990 0.89 +0.2 730,747 - GFF990 0.89 -0.4 730,747 - GFF990 0.89 +0.1 730,747 - GFF990 0.89 -0.9 730,747 - GFF990 0.89 -0.2 730,755 - -0.3 730,772 - -0.2 731,019 - GFF991 0.51 +0.1 731,079 - GFF991 0.65 +0.2 731,108 + GFF991 0.72 +1.3 731,108 + GFF991 0.72 +0.7 731,108 + GFF991 0.72 -0.6 731,109 - GFF991 0.72 +0.2 731,266 + -0.2 731,266 + +0.4 731,267 - +1.1
Or see this region's nucleotide sequence