Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt
GFF849 - hypothetical protein, at 555,418 to 557,286
GFF849
Position (kb) 555
556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.464 kb on + strand at 554.464 kb on + strand at 554.464 kb on + strand at 554.464 kb on + strand at 554.465 kb on - strand at 554.686 kb on + strand at 554.711 kb on - strand at 554.854 kb on + strand at 554.900 kb on + strand at 554.900 kb on + strand at 554.900 kb on + strand at 554.901 kb on - strand at 554.963 kb on - strand at 554.963 kb on - strand at 554.992 kb on + strand at 554.992 kb on + strand at 554.993 kb on - strand at 554.993 kb on - strand at 554.993 kb on - strand at 555.035 kb on - strand at 555.035 kb on - strand at 555.035 kb on - strand at 555.035 kb on - strand at 555.097 kb on + strand at 555.097 kb on + strand at 555.097 kb on + strand at 555.098 kb on - strand at 555.098 kb on - strand at 555.098 kb on - strand at 555.127 kb on + strand at 555.127 kb on + strand at 555.159 kb on + strand at 555.159 kb on + strand at 555.159 kb on + strand at 555.160 kb on - strand at 555.160 kb on - strand at 555.160 kb on - strand at 555.181 kb on + strand at 555.182 kb on - strand at 555.263 kb on - strand at 555.275 kb on + strand at 555.276 kb on - strand at 555.276 kb on - strand at 555.276 kb on - strand at 555.276 kb on - strand at 555.276 kb on - strand at 555.276 kb on - strand at 555.317 kb on + strand at 555.317 kb on + strand at 555.318 kb on - strand at 555.318 kb on - strand at 555.318 kb on - strand at 555.318 kb on - strand at 555.358 kb on - strand at 555.368 kb on + strand at 555.368 kb on + strand at 555.369 kb on - strand at 555.369 kb on - strand at 555.369 kb on - strand at 555.419 kb on + strand at 555.420 kb on - strand at 555.420 kb on - strand at 555.474 kb on + strand at 555.475 kb on - strand at 555.475 kb on - strand at 555.556 kb on + strand at 555.638 kb on + strand, within GFF849 at 555.638 kb on + strand, within GFF849 at 555.638 kb on + strand, within GFF849 at 555.639 kb on - strand, within GFF849 at 555.639 kb on - strand, within GFF849 at 555.710 kb on - strand, within GFF849 at 555.710 kb on - strand, within GFF849 at 555.737 kb on - strand, within GFF849 at 555.737 kb on - strand, within GFF849 at 555.797 kb on + strand, within GFF849 at 555.797 kb on + strand, within GFF849 at 555.798 kb on - strand, within GFF849 at 555.798 kb on - strand, within GFF849 at 555.822 kb on - strand, within GFF849 at 555.844 kb on + strand, within GFF849 at 555.845 kb on - strand, within GFF849 at 556.000 kb on + strand, within GFF849 at 556.199 kb on + strand, within GFF849 at 556.199 kb on + strand, within GFF849 at 556.200 kb on - strand, within GFF849 at 556.200 kb on - strand, within GFF849 at 556.286 kb on + strand, within GFF849 at 556.433 kb on + strand, within GFF849 at 556.434 kb on - strand, within GFF849 at 556.546 kb on + strand, within GFF849 at 556.568 kb on + strand, within GFF849 at 556.568 kb on + strand, within GFF849 at 556.600 kb on + strand, within GFF849 at 556.601 kb on - strand, within GFF849 at 556.636 kb on + strand, within GFF849 at 556.637 kb on - strand, within GFF849 at 556.637 kb on - strand, within GFF849 at 556.729 kb on - strand, within GFF849 at 557.015 kb on + strand, within GFF849 at 557.016 kb on - strand, within GFF849 at 557.016 kb on - strand, within GFF849 at 557.057 kb on + strand, within GFF849 at 557.057 kb on + strand, within GFF849 at 557.058 kb on - strand, within GFF849 at 557.058 kb on - strand, within GFF849 at 557.078 kb on - strand, within GFF849 at 557.078 kb on - strand, within GFF849 at 557.100 kb on - strand at 557.100 kb on - strand at 557.150 kb on + strand at 557.150 kb on + strand at 557.150 kb on + strand at 557.150 kb on + strand at 557.151 kb on - strand at 557.171 kb on + strand at 557.171 kb on + strand at 557.171 kb on + strand at 557.172 kb on - strand at 557.172 kb on - strand at 557.314 kb on + strand at 557.314 kb on + strand at 557.315 kb on - strand at 557.429 kb on + strand at 557.480 kb on + strand at 557.480 kb on + strand at 557.481 kb on - strand at 557.481 kb on - strand at 557.481 kb on - strand at 557.568 kb on + strand at 557.568 kb on + strand at 557.568 kb on + strand at 557.569 kb on - strand at 557.569 kb on - strand at 557.637 kb on - strand at 557.692 kb on + strand at 557.693 kb on - strand at 557.693 kb on - strand at 557.708 kb on + strand at 557.720 kb on - strand at 557.720 kb on - strand at 557.768 kb on - strand at 557.768 kb on - strand at 557.781 kb on + strand at 557.781 kb on + strand at 557.781 kb on + strand at 557.782 kb on - strand at 557.782 kb on - strand at 557.795 kb on + strand at 557.796 kb on - strand at 557.796 kb on - strand at 557.850 kb on + strand at 557.850 kb on + strand at 557.851 kb on - strand at 557.898 kb on + strand at 557.899 kb on - strand at 557.899 kb on - strand at 557.995 kb on + strand at 557.995 kb on + strand at 558.034 kb on + strand at 558.034 kb on + strand at 558.034 kb on + strand at 558.034 kb on + strand at 558.070 kb on + strand at 558.105 kb on + strand at 558.105 kb on + strand at 558.105 kb on + strand at 558.105 kb on + strand at 558.106 kb on - strand at 558.106 kb on - strand at 558.106 kb on - strand at 558.106 kb on - strand at 558.106 kb on - strand at 558.106 kb on - strand at 558.151 kb on + strand at 558.151 kb on + strand at 558.151 kb on + strand at 558.152 kb on - strand at 558.152 kb on - strand at 558.152 kb on - strand at 558.152 kb on - strand at 558.152 kb on - strand at 558.246 kb on + strand at 558.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 554,464 + -0.1 554,464 + -1.3 554,464 + +0.3 554,464 + -0.0 554,465 - +0.3 554,686 + -1.1 554,711 - -1.7 554,854 + +0.6 554,900 + -0.0 554,900 + +1.3 554,900 + +0.1 554,901 - -0.6 554,963 - -0.0 554,963 - +0.2 554,992 + -0.1 554,992 + -0.3 554,993 - +0.6 554,993 - +0.2 554,993 - +0.1 555,035 - -1.1 555,035 - -1.3 555,035 - -0.2 555,035 - -1.9 555,097 + -0.5 555,097 + -0.2 555,097 + -0.0 555,098 - +0.0 555,098 - -0.0 555,098 - -0.5 555,127 + -1.0 555,127 + -0.9 555,159 + -0.7 555,159 + +0.2 555,159 + +0.3 555,160 - -0.1 555,160 - -0.4 555,160 - -0.2 555,181 + -1.5 555,182 - +0.2 555,263 - +1.0 555,275 + -0.7 555,276 - -1.0 555,276 - +0.0 555,276 - +0.3 555,276 - -0.1 555,276 - +0.4 555,276 - -0.5 555,317 + -0.3 555,317 + +0.6 555,318 - +0.0 555,318 - +0.3 555,318 - -0.1 555,318 - +0.4 555,358 - +0.5 555,368 + +0.3 555,368 + +0.9 555,369 - -0.1 555,369 - -0.1 555,369 - -1.8 555,419 + -0.7 555,420 - +0.1 555,420 - +0.5 555,474 + -0.1 555,475 - +0.2 555,475 - +0.0 555,556 + -0.2 555,638 + GFF849 0.12 -0.1 555,638 + GFF849 0.12 -0.1 555,638 + GFF849 0.12 -0.1 555,639 - GFF849 0.12 +0.2 555,639 - GFF849 0.12 -0.3 555,710 - GFF849 0.16 +0.2 555,710 - GFF849 0.16 -0.4 555,737 - GFF849 0.17 +0.0 555,737 - GFF849 0.17 -0.1 555,797 + GFF849 0.20 +0.7 555,797 + GFF849 0.20 +0.7 555,798 - GFF849 0.20 -0.4 555,798 - GFF849 0.20 +0.5 555,822 - GFF849 0.22 +1.3 555,844 + GFF849 0.23 +1.0 555,845 - GFF849 0.23 -0.4 556,000 + GFF849 0.31 -1.0 556,199 + GFF849 0.42 -0.9 556,199 + GFF849 0.42 -0.6 556,200 - GFF849 0.42 +1.5 556,200 - GFF849 0.42 -0.1 556,286 + GFF849 0.46 +0.1 556,433 + GFF849 0.54 -1.1 556,434 - GFF849 0.54 -0.1 556,546 + GFF849 0.60 -1.5 556,568 + GFF849 0.62 -0.7 556,568 + GFF849 0.62 +0.9 556,600 + GFF849 0.63 -0.0 556,601 - GFF849 0.63 -0.2 556,636 + GFF849 0.65 +0.7 556,637 - GFF849 0.65 +0.0 556,637 - GFF849 0.65 -0.2 556,729 - GFF849 0.70 -0.1 557,015 + GFF849 0.85 +0.5 557,016 - GFF849 0.86 +0.5 557,016 - GFF849 0.86 -0.1 557,057 + GFF849 0.88 +0.2 557,057 + GFF849 0.88 -0.7 557,058 - GFF849 0.88 -0.5 557,058 - GFF849 0.88 -0.4 557,078 - GFF849 0.89 +0.0 557,078 - GFF849 0.89 -0.1 557,100 - +0.3 557,100 - -0.0 557,150 + +1.1 557,150 + -0.8 557,150 + +1.0 557,150 + -1.1 557,151 - +0.1 557,171 + -0.9 557,171 + -0.6 557,171 + +0.3 557,172 - -0.9 557,172 - +0.2 557,314 + +2.5 557,314 + +0.9 557,315 - +0.0 557,429 + +0.2 557,480 + -0.3 557,480 + -0.2 557,481 - +0.4 557,481 - -0.1 557,481 - +0.3 557,568 + +0.5 557,568 + -1.5 557,568 + -1.9 557,569 - +0.1 557,569 - +0.2 557,637 - +0.3 557,692 + +0.2 557,693 - +0.1 557,693 - +0.3 557,708 + -0.1 557,720 - +0.4 557,720 - +0.3 557,768 - +0.0 557,768 - +0.5 557,781 + +0.2 557,781 + -0.5 557,781 + -0.1 557,782 - +1.4 557,782 - -0.9 557,795 + +0.2 557,796 - +0.2 557,796 - +0.8 557,850 + -0.6 557,850 + +0.7 557,851 - +0.4 557,898 + +0.4 557,899 - -0.5 557,899 - +0.2 557,995 + +0.3 557,995 + -0.0 558,034 + -0.1 558,034 + +0.1 558,034 + -1.3 558,034 + -0.5 558,070 + +0.1 558,105 + +0.1 558,105 + +0.1 558,105 + -0.2 558,105 + +1.1 558,106 - -1.3 558,106 - +0.7 558,106 - +0.7 558,106 - +0.6 558,106 - +0.3 558,106 - -0.4 558,151 + +1.3 558,151 + -0.1 558,151 + -0.0 558,152 - +0.5 558,152 - +0.6 558,152 - -0.2 558,152 - -0.0 558,152 - +0.2 558,246 + -0.4 558,247 - +2.5
Or see this region's nucleotide sequence