Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF837 and GFF838 are separated by 303 nucleotides GFF838 and GFF839 overlap by 8 nucleotides GFF839 and GFF840 are separated by 859 nucleotides
GFF837 - Mll5900 protein, at 539,209 to 539,694
GFF837
GFF838 - hypothetical protein, at 539,998 to 540,234
GFF838
GFF839 - hypothetical protein, at 540,227 to 540,355
GFF839
GFF840 - FIG149030: hypothetical protein, at 541,215 to 542,705
GFF840
Position (kb) 539
540
541 Strain fitness (log2 ratio) -2
-1
0
1 at 539.069 kb on + strand at 539.069 kb on + strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.070 kb on - strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.075 kb on + strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.076 kb on - strand at 539.112 kb on + strand at 539.113 kb on - strand at 539.118 kb on + strand at 539.118 kb on + strand at 539.119 kb on - strand at 539.119 kb on - strand at 539.119 kb on - strand at 539.174 kb on + strand at 539.174 kb on + strand at 539.175 kb on - strand at 539.175 kb on - strand at 539.175 kb on - strand at 539.193 kb on + strand at 539.393 kb on + strand, within GFF837 at 539.393 kb on + strand, within GFF837 at 539.393 kb on + strand, within GFF837 at 539.452 kb on + strand, within GFF837 at 539.573 kb on + strand, within GFF837 at 539.754 kb on - strand at 539.754 kb on - strand at 539.872 kb on + strand at 539.872 kb on + strand at 539.872 kb on + strand at 539.873 kb on - strand at 539.873 kb on - strand at 539.873 kb on - strand at 539.958 kb on - strand at 539.999 kb on + strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.000 kb on - strand at 540.041 kb on + strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.042 kb on - strand, within GFF838 at 540.221 kb on + strand at 540.222 kb on - strand at 540.499 kb on - strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.657 kb on + strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.658 kb on - strand at 540.823 kb on + strand at 540.823 kb on + strand at 540.824 kb on - strand at 540.872 kb on + strand at 540.873 kb on - strand at 540.873 kb on - strand at 540.873 kb on - strand at 541.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 539,069 + -0.4 539,069 + +1.7 539,070 - -0.9 539,070 - -0.4 539,070 - -0.3 539,070 - +0.3 539,070 - +0.1 539,070 - +0.8 539,070 - +0.2 539,075 + +0.3 539,075 + -0.4 539,075 + +0.1 539,075 + -0.2 539,075 + +0.9 539,076 - +0.1 539,076 - -0.7 539,076 - +1.4 539,076 - -0.3 539,076 - +0.2 539,112 + +0.1 539,113 - -0.7 539,118 + -0.6 539,118 + +1.0 539,119 - +0.2 539,119 - +0.1 539,119 - -0.1 539,174 + -0.3 539,174 + +0.5 539,175 - -0.8 539,175 - -1.8 539,175 - +0.4 539,193 + +0.4 539,393 + GFF837 0.38 +0.2 539,393 + GFF837 0.38 +0.9 539,393 + GFF837 0.38 +0.3 539,452 + GFF837 0.50 -0.1 539,573 + GFF837 0.75 -0.1 539,754 - +1.0 539,754 - +0.4 539,872 + -0.9 539,872 + +0.3 539,872 + +1.7 539,873 - -0.1 539,873 - +0.2 539,873 - +0.8 539,958 - -1.8 539,999 + -0.0 540,000 - -0.4 540,000 - -2.0 540,000 - +0.8 540,000 - +0.7 540,041 + GFF838 0.18 +0.2 540,042 - GFF838 0.19 +0.4 540,042 - GFF838 0.19 +0.2 540,042 - GFF838 0.19 -0.4 540,042 - GFF838 0.19 -0.1 540,221 + -0.4 540,222 - +0.1 540,499 - +0.8 540,657 + -1.2 540,657 + -0.0 540,657 + -0.9 540,657 + +0.9 540,657 + -0.2 540,658 - +1.0 540,658 - -0.3 540,658 - +0.2 540,658 - -0.1 540,658 - -0.6 540,823 + -0.8 540,823 + -0.2 540,824 - -2.3 540,872 + -0.1 540,873 - -0.1 540,873 - -0.0 540,873 - +0.8 541,125 - -1.5
Or see this region's nucleotide sequence