Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF750 and GFF751 are separated by 494 nucleotides GFF751 and GFF752 are separated by 426 nucleotides
GFF750 - hypothetical protein, at 437,247 to 438,044
GFF750
GFF751 - Rhs family protein, at 438,539 to 441,220
GFF751
GFF752 - Permease of the drug/metabolite transporter (DMT) superfamily, at 441,647 to 442,585
GFF752
Position (kb) 438
439
440
441
442 Strain fitness (log2 ratio) -2
-1
0
1
2 at 437.598 kb on + strand, within GFF750 at 437.598 kb on + strand, within GFF750 at 437.599 kb on - strand, within GFF750 at 437.599 kb on - strand, within GFF750 at 438.007 kb on + strand at 438.046 kb on + strand at 438.128 kb on - strand at 438.186 kb on - strand at 438.292 kb on + strand at 438.338 kb on - strand at 438.525 kb on - strand at 438.536 kb on - strand at 438.644 kb on + strand at 438.718 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.730 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.737 kb on + strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.738 kb on - strand at 438.768 kb on - strand at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.849 kb on + strand, within GFF751 at 438.894 kb on - strand, within GFF751 at 438.894 kb on - strand, within GFF751 at 438.894 kb on - strand, within GFF751 at 439.302 kb on + strand, within GFF751 at 439.302 kb on + strand, within GFF751 at 439.326 kb on + strand, within GFF751 at 439.326 kb on + strand, within GFF751 at 439.488 kb on + strand, within GFF751 at 439.488 kb on + strand, within GFF751 at 439.489 kb on - strand, within GFF751 at 439.489 kb on - strand, within GFF751 at 439.674 kb on + strand, within GFF751 at 439.674 kb on + strand, within GFF751 at 439.680 kb on + strand, within GFF751 at 439.680 kb on + strand, within GFF751 at 439.681 kb on - strand, within GFF751 at 439.845 kb on + strand, within GFF751 at 439.845 kb on + strand, within GFF751 at 439.845 kb on + strand, within GFF751 at 439.845 kb on + strand, within GFF751 at 439.845 kb on + strand, within GFF751 at 439.846 kb on - strand, within GFF751 at 439.846 kb on - strand, within GFF751 at 439.846 kb on - strand, within GFF751 at 439.852 kb on - strand, within GFF751 at 439.852 kb on - strand, within GFF751 at 439.908 kb on + strand, within GFF751 at 439.908 kb on + strand, within GFF751 at 440.073 kb on + strand, within GFF751 at 440.073 kb on + strand, within GFF751 at 440.073 kb on + strand, within GFF751 at 440.073 kb on + strand, within GFF751 at 440.073 kb on + strand, within GFF751 at 440.074 kb on - strand, within GFF751 at 440.139 kb on + strand, within GFF751 at 440.139 kb on + strand, within GFF751 at 440.139 kb on + strand, within GFF751 at 440.140 kb on - strand, within GFF751 at 440.145 kb on + strand, within GFF751 at 440.146 kb on - strand, within GFF751 at 440.146 kb on - strand, within GFF751 at 440.146 kb on - strand, within GFF751 at 440.220 kb on + strand, within GFF751 at 440.221 kb on - strand, within GFF751 at 440.283 kb on + strand, within GFF751 at 440.283 kb on + strand, within GFF751 at 440.284 kb on - strand, within GFF751 at 440.284 kb on - strand, within GFF751 at 440.284 kb on - strand, within GFF751 at 440.403 kb on + strand, within GFF751 at 440.403 kb on + strand, within GFF751 at 440.500 kb on - strand, within GFF751 at 440.500 kb on - strand, within GFF751 at 440.500 kb on - strand, within GFF751 at 440.575 kb on - strand, within GFF751 at 440.646 kb on + strand, within GFF751 at 440.646 kb on + strand, within GFF751 at 440.647 kb on - strand, within GFF751 at 440.647 kb on - strand, within GFF751 at 440.668 kb on - strand, within GFF751 at 440.668 kb on - strand, within GFF751 at 440.668 kb on - strand, within GFF751 at 440.683 kb on + strand, within GFF751 at 440.684 kb on - strand, within GFF751 at 440.684 kb on - strand, within GFF751 at 440.784 kb on + strand, within GFF751 at 440.784 kb on + strand, within GFF751 at 440.785 kb on - strand, within GFF751 at 440.832 kb on + strand, within GFF751 at 440.832 kb on + strand, within GFF751 at 440.832 kb on + strand, within GFF751 at 440.991 kb on + strand at 440.991 kb on + strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 440.992 kb on - strand at 441.002 kb on + strand at 441.012 kb on + strand at 441.012 kb on + strand at 441.013 kb on - strand at 441.013 kb on - strand at 441.013 kb on - strand at 441.013 kb on - strand at 441.013 kb on - strand at 441.013 kb on - strand at 441.087 kb on + strand at 441.087 kb on + strand at 441.087 kb on + strand at 441.087 kb on + strand at 441.087 kb on + strand at 441.087 kb on + strand at 441.088 kb on - strand at 441.088 kb on - strand at 441.088 kb on - strand at 441.123 kb on + strand at 441.123 kb on + strand at 441.123 kb on + strand at 441.123 kb on + strand at 441.153 kb on + strand at 441.153 kb on + strand at 441.154 kb on - strand at 441.154 kb on - strand at 441.207 kb on + strand at 441.208 kb on - strand at 441.208 kb on - strand at 441.208 kb on - strand at 441.222 kb on + strand at 441.222 kb on + strand at 441.222 kb on + strand at 441.223 kb on - strand at 441.390 kb on - strand at 441.424 kb on + strand at 441.425 kb on - strand at 441.425 kb on - strand at 441.929 kb on + strand, within GFF752 at 441.932 kb on + strand, within GFF752 at 441.932 kb on + strand, within GFF752 at 441.932 kb on + strand, within GFF752 at 441.932 kb on + strand, within GFF752 at 441.932 kb on + strand, within GFF752 at 441.933 kb on - strand, within GFF752 at 441.933 kb on - strand, within GFF752 at 441.968 kb on + strand, within GFF752 at 441.968 kb on + strand, within GFF752 at 441.968 kb on + strand, within GFF752 at 441.968 kb on + strand, within GFF752 at 441.969 kb on - strand, within GFF752 at 442.001 kb on + strand, within GFF752 at 442.001 kb on + strand, within GFF752 at 442.001 kb on + strand, within GFF752 at 442.043 kb on + strand, within GFF752 at 442.043 kb on + strand, within GFF752 at 442.043 kb on + strand, within GFF752 at 442.043 kb on + strand, within GFF752 at 442.043 kb on + strand, within GFF752 at 442.044 kb on - strand, within GFF752 at 442.091 kb on + strand, within GFF752 at 442.092 kb on - strand, within GFF752 at 442.196 kb on + strand, within GFF752 at 442.196 kb on + strand, within GFF752 at 442.196 kb on + strand, within GFF752 at 442.197 kb on - strand, within GFF752 at 442.205 kb on + strand, within GFF752 at 442.206 kb on - strand, within GFF752
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 437,598 + GFF750 0.44 -0.1 437,598 + GFF750 0.44 -0.3 437,599 - GFF750 0.44 +0.5 437,599 - GFF750 0.44 -1.6 438,007 + +0.8 438,046 + +0.1 438,128 - -1.0 438,186 - -0.6 438,292 + -0.2 438,338 - -0.1 438,525 - -0.8 438,536 - +0.4 438,644 + -0.3 438,718 + -0.5 438,730 + +0.4 438,730 + +0.3 438,730 + +0.1 438,730 + +0.5 438,730 + +0.5 438,730 + -0.7 438,737 + +0.6 438,737 + -0.2 438,737 + -0.4 438,737 + -0.7 438,738 - +0.0 438,738 - +1.0 438,738 - +0.2 438,738 - -0.4 438,768 - -0.1 438,849 + GFF751 0.12 -0.2 438,849 + GFF751 0.12 -0.2 438,849 + GFF751 0.12 +0.8 438,849 + GFF751 0.12 -0.3 438,894 - GFF751 0.13 +1.1 438,894 - GFF751 0.13 -0.4 438,894 - GFF751 0.13 +0.4 439,302 + GFF751 0.28 -0.9 439,302 + GFF751 0.28 -0.6 439,326 + GFF751 0.29 +0.5 439,326 + GFF751 0.29 +0.6 439,488 + GFF751 0.35 -0.4 439,488 + GFF751 0.35 +0.0 439,489 - GFF751 0.35 +0.2 439,489 - GFF751 0.35 +0.5 439,674 + GFF751 0.42 +0.2 439,674 + GFF751 0.42 +1.2 439,680 + GFF751 0.43 -0.0 439,680 + GFF751 0.43 -0.1 439,681 - GFF751 0.43 +0.2 439,845 + GFF751 0.49 +0.1 439,845 + GFF751 0.49 +0.1 439,845 + GFF751 0.49 +0.7 439,845 + GFF751 0.49 -0.8 439,845 + GFF751 0.49 +0.0 439,846 - GFF751 0.49 -0.2 439,846 - GFF751 0.49 +0.3 439,846 - GFF751 0.49 +0.3 439,852 - GFF751 0.49 -0.1 439,852 - GFF751 0.49 -0.4 439,908 + GFF751 0.51 +0.2 439,908 + GFF751 0.51 +0.8 440,073 + GFF751 0.57 -0.2 440,073 + GFF751 0.57 -0.0 440,073 + GFF751 0.57 +0.4 440,073 + GFF751 0.57 -0.5 440,073 + GFF751 0.57 -0.2 440,074 - GFF751 0.57 +0.1 440,139 + GFF751 0.60 +1.5 440,139 + GFF751 0.60 +0.3 440,139 + GFF751 0.60 -0.1 440,140 - GFF751 0.60 +0.5 440,145 + GFF751 0.60 -0.1 440,146 - GFF751 0.60 -0.1 440,146 - GFF751 0.60 -0.1 440,146 - GFF751 0.60 +0.3 440,220 + GFF751 0.63 +0.4 440,221 - GFF751 0.63 +0.4 440,283 + GFF751 0.65 -0.2 440,283 + GFF751 0.65 +0.7 440,284 - GFF751 0.65 +0.7 440,284 - GFF751 0.65 +0.3 440,284 - GFF751 0.65 -0.4 440,403 + GFF751 0.70 +0.2 440,403 + GFF751 0.70 +0.0 440,500 - GFF751 0.73 -0.4 440,500 - GFF751 0.73 -0.5 440,500 - GFF751 0.73 +0.2 440,575 - GFF751 0.76 -0.5 440,646 + GFF751 0.79 +0.2 440,646 + GFF751 0.79 +0.6 440,647 - GFF751 0.79 -1.2 440,647 - GFF751 0.79 -1.3 440,668 - GFF751 0.79 -0.2 440,668 - GFF751 0.79 +0.0 440,668 - GFF751 0.79 -0.2 440,683 + GFF751 0.80 -0.3 440,684 - GFF751 0.80 +0.0 440,684 - GFF751 0.80 +1.3 440,784 + GFF751 0.84 +0.3 440,784 + GFF751 0.84 +0.8 440,785 - GFF751 0.84 +0.7 440,832 + GFF751 0.85 -0.5 440,832 + GFF751 0.85 +0.1 440,832 + GFF751 0.85 +0.3 440,991 + +0.1 440,991 + -0.1 440,992 - +0.3 440,992 - -1.0 440,992 - +0.5 440,992 - +0.0 440,992 - +0.7 440,992 - +0.5 440,992 - +0.3 440,992 - -1.0 440,992 - +0.7 440,992 - +1.0 440,992 - -0.4 441,002 + +0.5 441,012 + +0.2 441,012 + +0.4 441,013 - +0.4 441,013 - -0.5 441,013 - +0.1 441,013 - +0.4 441,013 - +0.4 441,013 - -0.5 441,087 + +0.1 441,087 + -0.5 441,087 + -0.2 441,087 + -0.4 441,087 + -0.1 441,087 + -0.3 441,088 - +0.2 441,088 - +0.0 441,088 - -0.2 441,123 + +0.1 441,123 + -0.0 441,123 + -0.2 441,123 + -0.8 441,153 + -0.3 441,153 + +0.4 441,154 - +1.1 441,154 - -0.6 441,207 + -0.6 441,208 - +0.6 441,208 - +2.2 441,208 - -1.8 441,222 + +0.0 441,222 + +0.7 441,222 + +0.0 441,223 - -0.1 441,390 - -0.9 441,424 + +0.4 441,425 - +0.7 441,425 - -0.0 441,929 + GFF752 0.30 -0.4 441,932 + GFF752 0.30 -0.4 441,932 + GFF752 0.30 +1.3 441,932 + GFF752 0.30 -0.5 441,932 + GFF752 0.30 -0.7 441,932 + GFF752 0.30 +0.0 441,933 - GFF752 0.30 +1.1 441,933 - GFF752 0.30 +0.2 441,968 + GFF752 0.34 -0.0 441,968 + GFF752 0.34 +0.6 441,968 + GFF752 0.34 +0.3 441,968 + GFF752 0.34 -0.6 441,969 - GFF752 0.34 +0.4 442,001 + GFF752 0.38 +0.5 442,001 + GFF752 0.38 -1.0 442,001 + GFF752 0.38 -0.1 442,043 + GFF752 0.42 +0.8 442,043 + GFF752 0.42 -0.3 442,043 + GFF752 0.42 +0.3 442,043 + GFF752 0.42 +0.0 442,043 + GFF752 0.42 -2.1 442,044 - GFF752 0.42 -0.3 442,091 + GFF752 0.47 -0.6 442,092 - GFF752 0.47 +0.6 442,196 + GFF752 0.58 +0.4 442,196 + GFF752 0.58 -0.3 442,196 + GFF752 0.58 +0.1 442,197 - GFF752 0.59 +0.7 442,205 + GFF752 0.59 -0.1 442,206 - GFF752 0.60 +0.1
Or see this region's nucleotide sequence