Experiment: Ying_AminoAcid20 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF720 and GFF721 are separated by 17 nucleotides GFF721 and GFF722 are separated by 7 nucleotides GFF722 and GFF723 are separated by 6 nucleotides
GFF720 - UPF0246 protein YaaA, at 400,457 to 401,275
GFF720
GFF721 - Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2), at 401,293 to 402,177
GFF721
GFF722 - NADPH dependent preQ0 reductase (EC 1.7.1.13), at 402,185 to 403,036
GFF722
GFF723 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 403,043 to 404,110
GFF723
Position (kb) 402
403
404 Strain fitness (log2 ratio) -1
0
1 at 401.866 kb on + strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.867 kb on - strand, within GFF721 at 401.884 kb on + strand, within GFF721 at 401.885 kb on - strand, within GFF721 at 401.896 kb on + strand, within GFF721 at 401.897 kb on - strand, within GFF721 at 401.903 kb on - strand, within GFF721 at 401.977 kb on + strand, within GFF721 at 401.978 kb on - strand, within GFF721 at 401.978 kb on - strand, within GFF721 at 402.070 kb on + strand, within GFF721 at 402.070 kb on + strand, within GFF721 at 402.233 kb on + strand at 402.233 kb on + strand at 402.233 kb on + strand at 402.234 kb on - strand at 402.246 kb on - strand at 402.455 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.665 kb on + strand, within GFF722 at 402.666 kb on - strand, within GFF722 at 402.836 kb on + strand, within GFF722 at 402.836 kb on + strand, within GFF722 at 402.837 kb on - strand, within GFF722 at 402.837 kb on - strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.893 kb on + strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.894 kb on - strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.938 kb on + strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.939 kb on - strand, within GFF722 at 402.948 kb on - strand, within GFF722 at 403.401 kb on + strand, within GFF723 at 403.488 kb on + strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.489 kb on - strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.892 kb on + strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.893 kb on - strand, within GFF723 at 403.897 kb on - strand, within GFF723
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_AminoAcid20 rep A; time point 1 remove 401,866 + GFF721 0.65 +0.3 401,867 - GFF721 0.65 -0.5 401,867 - GFF721 0.65 +0.3 401,867 - GFF721 0.65 +0.4 401,884 + GFF721 0.67 -0.2 401,885 - GFF721 0.67 -1.1 401,896 + GFF721 0.68 -0.4 401,897 - GFF721 0.68 +0.3 401,903 - GFF721 0.69 +0.2 401,977 + GFF721 0.77 -1.1 401,978 - GFF721 0.77 -0.6 401,978 - GFF721 0.77 +0.0 402,070 + GFF721 0.88 -0.6 402,070 + GFF721 0.88 +1.3 402,233 + -0.5 402,233 + +0.9 402,233 + +0.6 402,234 - +0.1 402,246 - +0.2 402,455 + GFF722 0.32 -0.6 402,665 + GFF722 0.56 -0.3 402,665 + GFF722 0.56 +0.5 402,665 + GFF722 0.56 -1.3 402,666 - GFF722 0.56 -0.2 402,836 + GFF722 0.76 +1.7 402,836 + GFF722 0.76 +0.1 402,837 - GFF722 0.77 +0.9 402,837 - GFF722 0.77 -0.2 402,893 + GFF722 0.83 -0.9 402,893 + GFF722 0.83 +0.7 402,893 + GFF722 0.83 -0.1 402,893 + GFF722 0.83 +0.7 402,894 - GFF722 0.83 -0.1 402,894 - GFF722 0.83 +1.4 402,894 - GFF722 0.83 +0.1 402,894 - GFF722 0.83 -0.7 402,894 - GFF722 0.83 -1.1 402,938 + GFF722 0.88 -0.6 402,938 + GFF722 0.88 -0.4 402,938 + GFF722 0.88 -0.8 402,938 + GFF722 0.88 +0.4 402,939 - GFF722 0.88 +0.9 402,939 - GFF722 0.88 -0.7 402,939 - GFF722 0.88 -0.3 402,939 - GFF722 0.88 -0.4 402,939 - GFF722 0.88 -0.3 402,948 - GFF722 0.90 -0.7 403,401 + GFF723 0.34 +0.2 403,488 + GFF723 0.42 +1.5 403,489 - GFF723 0.42 +0.8 403,489 - GFF723 0.42 -0.7 403,489 - GFF723 0.42 -0.9 403,892 + GFF723 0.79 -0.2 403,892 + GFF723 0.79 -0.6 403,893 - GFF723 0.80 -0.2 403,893 - GFF723 0.80 +0.1 403,893 - GFF723 0.80 -0.7 403,897 - GFF723 0.80 +0.0
Or see this region's nucleotide sequence