Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5619

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,635,674	-		GFF5617	0.77	+0.2
2,635,860	+				-0.1
2,635,860	-				-0.1
2,635,922	+				+0.3
2,635,923	-				-0.3
2,636,088	-				-0.3
2,636,148	-		GFF5618	0.14	+0.1
2,636,207	+		GFF5618	0.24	-0.5
2,636,213	+		GFF5618	0.25	-1.1
2,636,214	-		GFF5618	0.26	+0.5
2,636,345	+		GFF5618	0.48	-0.7
2,636,346	-		GFF5618	0.48	-0.7
2,636,346	-		GFF5618	0.48	+0.1
2,636,561	+		GFF5618	0.84	-0.1
2,636,652	-				-0.2
2,636,892	+		GFF5619	0.19	+0.1
2,636,899	-		GFF5619	0.20	-0.1
2,636,928	+		GFF5619	0.23	-0.5
2,636,941	-		GFF5619	0.24	-0.1
2,636,985	+		GFF5619	0.27	+0.0
2,637,060	+		GFF5619	0.34	-0.1
2,637,094	-		GFF5619	0.37	+0.1
2,637,222	+		GFF5619	0.48	-0.1
2,637,384	+		GFF5619	0.61	+0.2
2,637,384	+		GFF5619	0.61	-1.2
2,637,426	+		GFF5619	0.65	-0.3
2,637,427	-		GFF5619	0.65	-0.2
2,637,427	-		GFF5619	0.65	-0.7
2,637,591	+		GFF5619	0.79	-1.0
2,638,232	+		GFF5620	0.17	-0.1
2,638,317	-		GFF5620	0.21	-0.5
2,638,488	-		GFF5620	0.29	-1.3
2,638,515	-		GFF5620	0.30	-0.4