Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5591

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,603,742	-		GFF5590	0.18	+0.1
2,603,904	-		GFF5590	0.33	+0.6
2,603,904	-		GFF5590	0.33	-0.2
2,604,119	+		GFF5590	0.52	-0.2
2,604,119	+		GFF5590	0.52	-0.7
2,604,167	+		GFF5590	0.56	-0.1
2,604,168	-		GFF5590	0.56	+0.3
2,604,168	-		GFF5590	0.56	-0.5
2,604,168	-		GFF5590	0.56	+0.5
2,604,168	-		GFF5590	0.56	+0.1
2,604,168	-		GFF5590	0.56	+0.5
2,604,168	-		GFF5590	0.56	+0.2
2,604,168	-		GFF5590	0.56	+0.1
2,604,168	-		GFF5590	0.56	+0.3
2,604,389	+		GFF5590	0.76	-0.5
2,604,390	-		GFF5590	0.76	+0.4
2,604,390	-		GFF5590	0.76	-2.1
2,604,479	+		GFF5590	0.84	-0.1
2,604,479	+		GFF5590	0.84	-0.1
2,604,479	+		GFF5590	0.84	+0.5
2,604,480	-		GFF5590	0.84	+0.4
2,604,480	-		GFF5590	0.84	+0.0
2,604,594	+				-1.2
2,604,594	+				+0.3
2,604,595	-				+0.6
2,604,595	-				+0.2
2,604,595	-				+1.5
2,604,698	+				+1.0
2,605,101	+		GFF5591	0.17	+1.2
2,605,101	+		GFF5591	0.17	-0.5
2,605,102	-		GFF5591	0.17	-0.0
2,605,423	-		GFF5591	0.32	-1.0
2,605,423	-		GFF5591	0.32	-0.0
2,605,552	-		GFF5591	0.37	+0.6
2,605,626	+		GFF5591	0.41	+0.1
2,605,626	+		GFF5591	0.41	+0.1
2,605,627	-		GFF5591	0.41	+0.4
2,605,627	-		GFF5591	0.41	+0.3
2,605,648	-		GFF5591	0.42	+0.8
2,605,648	-		GFF5591	0.42	+0.1
2,605,716	+		GFF5591	0.45	-0.1
2,605,716	+		GFF5591	0.45	+0.4
2,605,716	+		GFF5591	0.45	-1.1
2,605,716	+		GFF5591	0.45	+0.2
2,605,716	+		GFF5591	0.45	-0.2
2,605,717	-		GFF5591	0.45	+0.5
2,605,722	+		GFF5591	0.45	-0.3
2,605,749	+		GFF5591	0.46	-0.4
2,605,749	+		GFF5591	0.46	+0.2
2,605,750	-		GFF5591	0.46	+0.4
2,605,750	-		GFF5591	0.46	+0.1
2,605,870	-		GFF5591	0.51	+0.5
2,606,125	-		GFF5591	0.63	+0.8
2,606,125	-		GFF5591	0.63	+0.2
2,606,196	+		GFF5591	0.66	+0.3
2,606,304	+		GFF5591	0.71	+0.2
2,606,304	+		GFF5591	0.71	-0.0
2,606,305	-		GFF5591	0.71	-0.0
2,606,305	-		GFF5591	0.71	-0.0
2,606,305	-		GFF5591	0.71	-0.9
2,606,305	-		GFF5591	0.71	+0.1
2,606,305	-		GFF5591	0.71	+0.3
2,606,538	+		GFF5591	0.81	+0.1
2,606,559	+		GFF5591	0.82	+0.5
2,606,559	+		GFF5591	0.82	-1.1
2,606,559	+		GFF5591	0.82	+0.4
2,606,559	+		GFF5591	0.82	+1.1
2,606,560	-		GFF5591	0.82	+0.2
2,606,624	+		GFF5591	0.85	-0.2
2,606,624	+		GFF5591	0.85	-0.0
2,606,625	-		GFF5591	0.85	+0.1
2,606,634	+		GFF5591	0.85	-1.3
2,606,635	-		GFF5591	0.85	+0.2
2,606,685	+		GFF5591	0.88	+0.7
2,606,686	-		GFF5591	0.88	-0.6
2,606,686	-		GFF5591	0.88	-0.1
2,606,686	-		GFF5591	0.88	+0.0
2,607,446	+		GFF5592	0.30	-0.5
2,607,447	-		GFF5592	0.30	+0.2
2,607,833	+		GFF5592	0.61	+0.6
2,607,833	+		GFF5592	0.61	+0.8
2,607,833	+		GFF5592	0.61	-0.2
2,607,834	-		GFF5592	0.61	-0.3
2,607,834	-		GFF5592	0.61	+0.6
2,607,870	-		GFF5592	0.64	-1.8