Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5340

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,337,500	+		GFF5338	0.68	+0.0
2,337,575	+		GFF5338	0.80	-0.6
2,337,576	-		GFF5338	0.80	+0.0
2,337,576	-		GFF5338	0.80	+0.1
2,337,576	-		GFF5338	0.80	+0.5
2,338,424	+				-0.8
2,338,595	+		GFF5340	0.17	-0.5
2,338,596	-		GFF5340	0.17	-0.9
2,338,631	+		GFF5340	0.22	-1.1
2,338,826	+		GFF5340	0.52	+0.9
2,338,827	-		GFF5340	0.52	-0.3
2,339,148	-				+0.3
2,339,149	+				-1.1
2,339,149	+				+0.7
2,339,149	+				-1.1
2,339,150	-				+1.6
2,339,150	-				+0.6
2,339,150	-				-0.1
2,339,150	-				+0.5
2,339,152	-				-1.0
2,339,152	-				+0.1
2,339,152	-				+0.2
2,339,152	-				-0.4
2,339,152	-				-1.4
2,339,152	-				-0.5
2,339,203	-				+0.5
2,339,203	-				-0.9
2,339,218	+				-0.8
2,339,276	+				+0.5
2,339,277	-				-2.9
2,339,306	+				-0.8
2,339,307	-				-1.0
2,339,307	-				+0.1
2,339,307	-				+0.1
2,339,330	+				+0.3
2,339,330	+				+0.2
2,339,330	+				-0.2
2,339,347	+				+2.5
2,339,347	+				-0.3
2,339,384	+				-0.5