Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5183

Experiment: Ying_AminoAcid20 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_AminoAcid20 rep A; time point 1
2,197,880	+		GFF5182	0.21	-0.2
2,197,880	+		GFF5182	0.21	+0.3
2,197,881	-		GFF5182	0.21	-0.3
2,197,881	-		GFF5182	0.21	+0.7
2,197,881	-		GFF5182	0.21	-1.2
2,197,881	-		GFF5182	0.21	-1.8
2,198,808	+				+0.2
2,198,808	+				+0.0
2,198,809	-				-0.2
2,198,809	-				-0.3
2,198,809	-				+0.5
2,199,087	+		GFF5183	0.32	-0.8
2,199,358	-		GFF5183	0.63	-0.9
2,199,781	+				-0.1
2,199,781	+				+0.1
2,199,781	+				-0.1
2,199,781	+				+0.2
2,199,781	+				+1.1
2,199,781	+				-0.4
2,199,781	+				-0.2
2,199,781	+				+0.1
2,199,782	-		GFF5184	0.10	-0.5
2,199,782	-		GFF5184	0.10	-0.3
2,199,859	+		GFF5184	0.21	-0.0
2,199,859	+		GFF5184	0.21	+0.4
2,199,860	-		GFF5184	0.21	-0.3
2,199,860	-		GFF5184	0.21	+0.2
2,199,860	-		GFF5184	0.21	+0.4
2,200,234	+		GFF5184	0.72	+0.0
2,200,265	-		GFF5184	0.76	-0.4
2,200,265	-		GFF5184	0.76	+1.0
2,200,357	+		GFF5184	0.89	+0.3
2,200,526	+				-1.3
2,200,527	-				-1.0